Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G046900 Glycine max HOM05D004061 ORTHO05D004693 4.6e-129 464.5 229 100.0
Glyma.13G134900 Glycine max HOM05D004061 ORTHO05D004693 1.6e-110 402.9 213 91.5
Phvul.007G161100 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 3.7e-102 375.2 213 85.4
Lj5g0017469 Lotus japonicus HOM05D004061 ORTHO05D004693 1.5e-92 343.2 212 78.3
VMungo0720G0415 Vigna mungo HOM05D004061 ORTHO05D004693 4.2e-90 335.1 260 65.8
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 7.4e-79 297.7 210 72.9
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 1.3e-78 297.0 225 64.0
Medtr1g067320 Medicago truncatula HOM05D004061 ORTHO05D004693 8.2e-78 294.3 214 66.8
Glyma.19G176300 Glycine max HOM05D004061 ORTHO05D004693 1.1e-77 293.9 217 65.0
Lalb_Chr25g0289361 Lupinus albus HOM05D004061 ORTHO05D004693 1.8e-77 293.1 220 66.4
Glyma.03G175700 Glycine max HOM05D004061 ORTHO05D004693 1.5e-76 290.0 217 64.5
TPR.G21459 Trifolium pratense HOM05D004061 ORTHO05D004693 7.7e-76 287.7 228 62.3
Medtr7g100150 Medicago truncatula HOM05D004061 ORTHO05D004693 2.9e-75 285.8 214 61.7
Ca_08806_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 6.5e-75 284.6 220 61.4
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 7.2e-74 281.2 236 62.7
Ca_11436_v3 Cicer arietinum L. HOM05D004061 ORTHO05D004693 6.1e-73 278.1 212 66.5
Lalb_Chr20g0113041 Lupinus albus HOM05D004061 ORTHO05D004693 6.1e-73 278.1 225 63.1
Psat0s1952g0040 Pisum sativum HOM05D004061 ORTHO05D004693 6.1e-73 278.1 220 60.0
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.1e-71 273.9 217 61.3
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 3.3e-71 272.3 204 62.7
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 4.4e-71 271.9 217 59.9
CiPaw.10G139500 Carya illinoinensis HOM05D004061 ORTHO05D004693 9.7e-71 270.8 218 59.2
Psat6g069360 Pisum sativum HOM05D004061 ORTHO05D004693 1.3e-70 270.4 191 67.0
TAR633G1989 Trochodendron aralioides HOM05D004061 ORTHO05D004693 2.8e-70 269.2 215 60.0
Haze_20694 Corylus avellana HOM05D004061 ORTHO05D004693 6.3e-70 268.1 247 52.6
Cfa017465 Carpinus fangiana HOM05D004061 ORTHO05D004693 8.2e-70 267.7 188 64.4
TPR.G7552 Trifolium pratense HOM05D004061 ORTHO05D004693 1.2e-68 263.8 192 67.2
Duzib128G0701 Durio zibethinus HOM05D004061 ORTHO05D004693 1.6e-68 263.5 207 60.9
arahy.Tifrunner.gnm1.ann1.9VFE0J Arachis hypogaea HOM05D004061 ORTHO05D004693 3.5e-68 262.3 217 60.8
Nitab4.5_0000643g0160 Nicotiana tabacum HOM05D004061 ORTHO05D004693 4.5e-68 261.9 217 59.0
arahy.Tifrunner.gnm1.ann1.6R95LH Arachis hypogaea HOM05D004061 ORTHO05D004693 2.2e-67 259.6 217 59.9
ClCG04G008650 Citrullus lanatus HOM05D004061 ORTHO05D004693 5.0e-67 258.5 217 58.1
Nitab4.5_0006252g0020 Nicotiana tabacum HOM05D004061 ORTHO05D004693 8.5e-67 257.7 216 58.8
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 1.1e-66 257.3 222 56.8
Lj3A975G70 Lonicera japonica HOM05D004061 ORTHO05D004693 2.5e-66 256.1 215 56.3
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 2.5e-66 256.1 210 58.1
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 4.2e-66 255.4 219 57.1
Migut.L01642 Erythranthe guttata HOM05D004061 ORTHO05D004693 5.5e-66 255.0 215 57.2
Phvul.001G172800 Phaseolus vulgaris HOM05D004061 ORTHO05D004693 9.4e-66 254.2 228 57.0
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 1.6e-65 253.4 267 49.4
Rhsim05G0184700 Rhododendron simsii HOM05D004061 ORTHO05D004693 4.7e-65 251.9 209 60.3
Thecc.05G049300 Theobroma cacao HOM05D004061 ORTHO05D004693 4.7e-65 251.9 207 60.4
Nn2g10562 Nelumbo nucifera HOM05D004061 ORTHO05D004693 1.0e-64 250.8 190 62.1
Peaxi162Scf00604g00010 Petunia axillaris HOM05D004061 ORTHO05D004693 8.8e-64 247.7 213 54.5
PSO384G5009 Papaver somniferum HOM05D004061 ORTHO05D004693 1.2e-63 247.3 219 55.7
Duzib093G0371 Durio zibethinus HOM05D004061 ORTHO05D004693 3.4e-63 245.7 219 56.2
Lsat_1_v5_gn_1_54740 Lactuca sativa HOM05D004061 ORTHO05D004693 3.4e-63 245.7 207 57.0
Nn2g12823 Nelumbo nucifera HOM05D004061 ORTHO05D004693 3.4e-63 245.7 213 54.5
PSO339G1720 Papaver somniferum HOM05D004061 ORTHO05D004693 3.4e-63 245.7 216 55.6
Sed0004085 Sechium edule HOM05D004061 ORTHO05D004693 3.4e-63 245.7 217 53.9
Solyc09g005960.4 Solanum lycopersicum HOM05D004061 ORTHO05D004693 4.4e-63 245.4 219 56.2
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.4e-63 245.4 193 59.6
Cc06_g03260 Coffea canephora HOM05D004061 ORTHO05D004693 5.7e-63 245.0 218 54.1
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 7.5e-63 244.6 214 54.7
Nitab4.5_0000202g0310 Nicotiana tabacum HOM05D004061 ORTHO05D004693 9.7e-63 244.2 212 54.2
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.3e-62 243.8 201 59.7
Sc20g0004290 Simmondsia chinensis HOM05D004061 ORTHO05D004693 1.7e-62 243.4 227 54.2
GSVIVG01025578001 Vitis vinifera HOM05D004061 ORTHO05D004693 2.8e-62 242.7 212 54.7
Sopen09g001820 Solanum pennellii HOM05D004061 ORTHO05D004693 3.7e-62 242.3 219 56.2
vmacro20095 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.7e-62 242.3 196 61.2
Sed0004679 Sechium edule HOM05D004061 ORTHO05D004693 4.8e-62 241.9 214 55.6
MBI05_g22082_MAGBIO Magnolia biondii HOM05D004061 ORTHO05D004693 3.1e-61 239.2 194 58.8
Oeu035162.1 Olea europaea HOM05D004061 ORTHO05D004693 4.1e-61 238.8 191 57.6
PSO699G0012 Papaver somniferum HOM05D004061 ORTHO05D004693 5.3e-61 238.4 228 53.1
Lalb_Chr01g0019101 Lupinus albus HOM05D004061 ORTHO05D004693 7.0e-61 238.0 228 56.6
HanXRQChr13g0392181 Helianthus annuus HOM05D004061 ORTHO05D004693 9.1e-61 237.7 209 53.6
Aqoxy4G03101 Aquilegia oxysepala HOM05D004061 ORTHO05D004693 2.0e-60 236.5 208 52.9
MSTRG.19117 Avicennia marina HOM05D004061 ORTHO05D004693 2.7e-60 236.1 213 53.5
ECA248G1662 Erigeron canadensis HOM05D004061 ORTHO05D004693 2.7e-60 236.1 199 56.8
PGSC0003DMG400011053 Solanum tuberosum HOM05D004061 ORTHO05D004693 3.5e-60 235.7 215 51.2
Solyc10g084500.1 Solanum lycopersicum HOM05D004061 ORTHO05D004693 5.9e-60 235.0 223 50.2
Peaxi162Scf00597g00310 Petunia axillaris HOM05D004061 ORTHO05D004693 1.0e-59 234.2 236 51.3
Sopen10g033930 Solanum pennellii HOM05D004061 ORTHO05D004693 1.9e-58 229.9 211 50.2
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 2.7e-57 226.1 209 53.6
unitig_8.g4322 Utricularia gibba HOM05D004061 ORTHO05D004693 3.6e-57 225.7 212 51.9
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 4.7e-57 225.3 216 52.8
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 6.1e-57 224.9 222 52.3
AL5G34410 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 8.0e-57 224.6 216 52.8
Carub.0005s2006 Capsella rubella HOM05D004061 ORTHO05D004693 1.0e-56 224.2 212 52.4
TWI74G1169 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.0e-56 224.2 206 53.4
TWI77G0888 Tripterygium wilfordii HOM05D004061 ORTHO05D004693 1.8e-56 223.4 215 53.0
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.0e-56 222.2 213 52.1
Cpa.g.sc114.23 Carica papaya HOM05D004061 ORTHO05D004693 5.2e-56 221.9 226 51.3
HanXRQChr11g0349611 Helianthus annuus HOM05D004061 ORTHO05D004693 5.2e-56 221.9 213 48.8
PGR004G1528 Punica granatum HOM05D004061 ORTHO05D004693 5.2e-56 221.9 207 52.7
HPP92_006587 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.2e-56 221.9 216 48.6
MD04G1110000 Malus domestica HOM05D004061 ORTHO05D004693 6.8e-56 221.5 222 51.4
Gohir.A01G218200 Gossypium hirsutum HOM05D004061 ORTHO05D004693 8.8e-56 221.1 216 50.9
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.2e-55 220.7 196 53.1
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 1.5e-55 220.3 210 52.4
CAN.G435.5 Capsicum annuum HOM05D004061 ORTHO05D004693 1.5e-55 220.3 204 52.0
CDE07G0262 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 3.4e-55 219.2 205 52.2
Lj2C103T21 Lonicera japonica HOM05D004061 ORTHO05D004693 4.4e-55 218.8 190 58.4
Thhalv10010698m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 7.5e-55 218.0 209 52.2
Gorai.001G248900 Gossypium raimondii HOM05D004061 ORTHO05D004693 9.8e-55 217.6 227 48.5
Sp5g08850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 1.3e-54 217.2 212 50.5
A07p21670 Brassica napus HOM05D004061 ORTHO05D004693 2.8e-54 216.1 212 50.9
Aa31LG10G9640 Aethionema arabicum HOM05D004061 ORTHO05D004693 3.7e-54 215.7 211 50.2
BcaC08g44627 Brassica carinata HOM05D004061 ORTHO05D004693 3.7e-54 215.7 212 51.4
Gohir.D01G207100 Gossypium hirsutum HOM05D004061 ORTHO05D004693 4.8e-54 215.3 233 48.5
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.1e-53 214.2 221 46.6
MELO3C003083.2 Cucumis melo HOM05D004061 ORTHO05D004693 1.8e-53 213.4 222 50.5
CsaV3_4G024510 Cucumis sativus L. HOM05D004061 ORTHO05D004693 1.8e-53 213.4 199 53.3
C06p21460 Brassica napus HOM05D004061 ORTHO05D004693 2.4e-53 213.0 212 50.9
BraA07t29848Z Brassica rapa HOM05D004061 ORTHO05D004693 3.1e-53 212.6 212 50.9
Dinv35674 Davidia involucrata HOM05D004061 ORTHO05D004693 1.2e-52 210.7 177 55.4
Gorai.002G252200 Gossypium raimondii HOM05D004061 ORTHO05D004693 2.0e-52 209.9 233 47.6
BolC6t37328H Brassica oleracea HOM05D004061 ORTHO05D004693 2.7e-52 209.5 212 50.5
Gohir.D13G097300 Gossypium hirsutum HOM05D004061 ORTHO05D004693 2.7e-52 209.5 227 48.0
Atru.chr8.2505 Acer truncatum HOM05D004061 ORTHO05D004693 4.5e-52 208.8 218 50.5
Gohir.A13G095435 Gossypium hirsutum HOM05D004061 ORTHO05D004693 7.7e-52 208.0 233 47.6
Prupe.6G245800 Prunus persica HOM05D004061 ORTHO05D004693 1.3e-51 207.2 222 48.2
Os03g0282800 Oryza sativa ssp. japonica HOM05D004061 ORTHO05D004693 1.7e-51 206.8 215 49.8
FvH4_6g14800 Fragaria vesca HOM05D004061 ORTHO05D004693 3.8e-51 205.7 223 49.8
FAN14G1560 Fragaria x ananassa HOM05D004061 ORTHO05D004693 3.8e-51 205.7 223 49.8
HPP92_015408 Vanilla planifolia HOM05D004061 ORTHO05D004693 5.0e-51 205.3 208 48.1
RcHm_v2.0_Chr3g0468021 Rosa chinensis HOM05D004061 ORTHO05D004693 8.6e-51 204.5 223 49.3
SHI12648 Sapria himalayana HOM05D004061 ORTHO05D004693 1.9e-50 203.4 201 51.7
Hund12072 Selenicereus undatus HOM05D004061 ORTHO05D004693 1.9e-50 203.4 224 49.1
Dinv35675 Davidia involucrata HOM05D004061 ORTHO05D004693 4.2e-50 202.2 150 61.3
THA.LOC104806513 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 7.2e-50 201.4 205 49.3
SalBow4G2839 Salvia bowleyana HOM05D004061 ORTHO05D004693 9.5e-50 201.1 228 46.1
SGA_v2.0_scaffold35G14186 Striga asiatica HOM05D004061 ORTHO05D004693 1.6e-49 200.3 189 51.3
FAN05G3362 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.0e-48 197.6 223 47.1
FAN02G3315 Fragaria x ananassa HOM05D004061 ORTHO05D004693 1.4e-48 197.2 223 48.9
BolC4t25479H Brassica oleracea HOM05D004061 ORTHO05D004693 2.0e-47 193.4 213 47.9
unitig_578.g16044 Utricularia gibba HOM05D004061 ORTHO05D004693 3.4e-47 192.6 216 44.0
C04p39050 Brassica napus HOM05D004061 ORTHO05D004693 2.2e-46 189.9 213 46.9
Aa31LG10G9670 Aethionema arabicum HOM05D004061 ORTHO05D004693 1.1e-45 187.6 183 50.3
BcaC02g09159 Brassica carinata HOM05D004061 ORTHO05D004693 2.4e-45 186.4 212 45.8
Dinv37231 Davidia involucrata HOM05D004061 ORTHO05D004693 1.2e-44 184.1 139 59.7
AT5G02720 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.3e-43 180.6 205 42.4
Carub.0006s0148 Capsella rubella HOM05D004061 ORTHO05D004693 1.3e-43 180.6 218 40.8
Sp6g39850 Schrenkiella parvula HOM05D004061 ORTHO05D004693 3.9e-43 179.1 217 44.2
BraA10t45336Z Brassica rapa HOM05D004061 ORTHO05D004693 1.5e-42 177.2 221 42.1
A10p32990 Brassica napus HOM05D004061 ORTHO05D004693 2.5e-42 176.4 229 40.6
Oeu049603.1 Olea europaea HOM05D004061 ORTHO05D004693 3.3e-42 176.0 135 60.0
BolC9t60131H Brassica oleracea HOM05D004061 ORTHO05D004693 5.6e-42 175.3 220 42.7
THA.LOC104816298 Tarenaya hassleriana HOM05D004061 ORTHO05D004693 7.3e-42 174.9 206 42.7
HPP92_026988 Vanilla planifolia HOM05D004061 ORTHO05D004693 7.3e-42 174.9 184 45.7
BcaNung03280 Brassica carinata HOM05D004061 ORTHO05D004693 1.6e-41 173.7 220 42.3
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.1e-41 173.3 215 42.3
BraA04t16312Z Brassica rapa HOM05D004061 ORTHO05D004693 1.4e-40 170.6 213 44.1
Ah.08g212360 Amaranthus hybridus HOM05D004061 ORTHO05D004693 5.2e-40 168.7 202 46.0
A04p06100 Brassica napus HOM05D004061 ORTHO05D004693 1.2e-39 167.5 213 43.7
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.6e-39 166.4 224 43.3
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 2.6e-39 166.4 224 43.3
PSO675G5312 Papaver somniferum HOM05D004061 ORTHO05D004693 1.3e-38 164.1 208 45.2
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 8.3e-38 161.4 189 46.0
AagrBONN_evm.TU.Sc2ySwM_117.2779 Anthoceros agrestis HOM05D004061 ORTHO05D004693 4.1e-37 159.1 217 39.2
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.3e-35 154.1 187 42.2
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.5e-34 150.6 139 51.8
COL.COLO4_10313 Corchorus olitorius HOM05D004061 ORTHO05D004693 1.5e-34 150.6 141 50.4
Mapoly0179s0007 Marchantia polymorpha HOM05D004061 ORTHO05D004693 1.8e-32 143.7 252 36.9
BcaB02g08525 Brassica carinata HOM05D004061 ORTHO05D004693 4.0e-32 142.5 161 46.6
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 6.4e-30 135.2 163 42.3
ATR0594G139 Amborella trichopoda HOM05D004061 ORTHO05D004693 2.5e-26 123.2 181 36.5
C09p73960 Brassica napus HOM05D004061 ORTHO05D004693 3.3e-26 122.9 217 33.2
BcaC06g32007 Brassica carinata HOM05D004061 ORTHO05D004693 4.7e-25 119.0 213 34.7
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 3.4e-23 112.8 118 47.5
Thhalv10016063m.g Eutrema salsugineum HOM05D004061 ORTHO05D004693 7.6e-23 111.7 144 38.9
AL6G11960 Arabidopsis lyrata HOM05D004061 ORTHO05D004693 1.1e-21 107.8 144 36.1
Zm00001eb397300 Zea mays HOM05D004061 ORTHO05D004693 1.7e-19 100.5 106 47.2
ATR0594G136 Amborella trichopoda HOM05D004061 ORTHO05D004693 1.6e-17 94.0 158 33.5
vmacro08682 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 4.4e-15 85.9 65 56.9
BcaB02g07781 Brassica carinata HOM05D004061 ORTHO05D004693 7.1e-13 78.6 67 56.7
Zm00001eb012900 Zea mays HOM05D004061 ORTHO05D004693 2.1e-12 77.0 93 46.2
CARHR210670 Cardamine hirsuta HOM05D004061 ORTHO05D004693 4.6e-12 75.9 71 49.3
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 4.3e-10 69.3 64 48.4
Zm00001eb341480 Zea mays HOM05D014943 ORTHO05D019389 1.4e-08 64.3 68 44.1
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 2.4e-08 63.5 60 48.3
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 3.1e-08 63.2 68 42.6
BolC3t12673H Brassica oleracea HOM05D004061 ORTHO05D004693 4.4e-07 59.3 106 34.9
HPP92_026989 Vanilla planifolia HOM05D004061 ORTHO05D004693 3.8e-06 56.2 56 46.4


User provided reference genes

Program Settings