Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G044400 Glycine max HOM05D004206 ORTHO05D003325 5.1e-131 471.1 240 100.0
Phvul.007G158100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 3.5e-79 298.9 244 71.3
VMungo0720G2610 Vigna mungo HOM05D004206 ORTHO05D003325 4.7e-76 288.5 241 71.4
Ca_09615_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 1.7e-65 253.4 229 65.5
Lalb_Chr21g0314341 Lupinus albus HOM05D004206 ORTHO05D003325 1.8e-59 233.4 256 59.8
Lalb_Chr06g0171041 Lupinus albus HOM05D004206 ORTHO05D003325 2.4e-56 223.0 258 57.0
Lalb_Chr02g0153081 Lupinus albus HOM05D004206 ORTHO05D003325 1.0e-54 217.6 259 56.4
Ca_08787_v3 Cicer arietinum L. HOM05D004206 ORTHO05D003325 3.1e-51 206.1 254 50.4
Medtr1g068825 Medicago truncatula HOM05D004206 ORTHO05D003325 3.2e-48 196.1 250 54.0
Psat6g067720 Pisum sativum HOM05D004206 ORTHO05D003325 4.2e-48 195.7 228 55.7
Glyma.03G172400 Glycine max HOM05D004206 ORTHO05D003325 7.9e-47 191.4 258 51.2
arahy.Tifrunner.gnm1.ann1.72TEPU Arachis hypogaea HOM05D004206 ORTHO05D003325 3.0e-46 189.5 268 48.5
Lalb_Chr25g0289551 Lupinus albus HOM05D004206 ORTHO05D003325 6.7e-46 188.3 256 50.4
Glyma.19G173300 Glycine max HOM05D004206 ORTHO05D003325 2.8e-44 183.0 258 50.4
Phvul.001G170100 Phaseolus vulgaris HOM05D004206 ORTHO05D003325 2.8e-44 183.0 246 50.4
Lj5g0023302 Lotus japonicus HOM05D004206 ORTHO05D003325 6.2e-44 181.8 242 51.2
Medtr7g099950 Medicago truncatula HOM05D004206 ORTHO05D003325 1.2e-42 177.6 253 47.8
VMungo1383G1995 Vigna mungo HOM05D004206 ORTHO05D003325 4.5e-42 175.6 245 50.2
Glyma.13G132002 Glycine max HOM05D004206 ORTHO05D003325 2.9e-41 172.9 114 82.5
Lj1g0028211 Lotus japonicus HOM05D004206 ORTHO05D003325 1.1e-40 171.0 259 48.6
Lalb_Chr20g0113171 Lupinus albus HOM05D004206 ORTHO05D003325 2.7e-39 166.4 259 45.9
TPR.G25989 Trifolium pratense HOM05D004206 ORTHO05D003325 4.0e-35 152.5 223 46.6
TPR.G21456 Trifolium pratense HOM05D004206 ORTHO05D003325 9.0e-35 151.4 219 45.7
FAN05G4716 Fragaria x ananassa HOM05D004206 ORTHO05D003325 7.9e-31 138.3 278 41.0
Psat3g048840 Pisum sativum HOM05D004206 ORTHO05D003325 1.5e-29 134.0 162 50.6
FAN02G2861 Fragaria x ananassa HOM05D004206 ORTHO05D003325 3.3e-29 132.9 278 40.3
Haze_20742 Corylus avellana HOM05D004206 ORTHO05D003325 4.3e-29 132.5 240 41.7
RcHm_v2.0_Chr3g0467301 Rosa chinensis HOM05D004206 ORTHO05D003325 4.3e-29 132.5 275 40.0
FAN09G1551 Fragaria x ananassa HOM05D004206 ORTHO05D003325 5.7e-29 132.1 277 39.7
FvH4_6g14310 Fragaria vesca HOM05D004206 ORTHO05D003325 1.3e-28 131.0 275 40.4
MD12G1138400 Malus domestica HOM05D004206 ORTHO05D003325 1.6e-28 130.6 224 44.2
Atru.chr8.1956 Acer truncatum HOM05D004206 ORTHO05D003325 3.1e-27 126.3 239 43.1
Cfa017429 Carpinus fangiana HOM05D004206 ORTHO05D003325 4.1e-27 125.9 240 40.0
CiPaw.10G143300 Carya illinoinensis HOM05D004206 ORTHO05D003325 5.9e-26 122.1 218 43.1
MD04G1121200 Malus domestica HOM05D004206 ORTHO05D003325 1.3e-25 120.9 221 43.9
Psat2g133080 Pisum sativum HOM05D000159 ORTHO05D000148 5.5e-24 115.5 162 47.5
CiPaw.09G188800 Carya illinoinensis HOM05D004206 ORTHO05D003325 1.6e-23 114.0 232 39.7
QL05p010542 Quercus lobata HOM05D004206 ORTHO05D003325 6.7e-22 108.6 256 41.0
QL07p047329 Quercus lobata HOM05D004206 ORTHO05D003325 1.1e-21 107.8 256 40.6
Prupe.6G250300 Prunus persica HOM05D004206 ORTHO05D003325 3.3e-21 106.3 281 33.8
Gohir.A04G080300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.7e-21 105.5 241 36.5
ClCG10G020930 Citrullus lanatus HOM05D004206 ORTHO05D003325 7.4e-21 105.1 261 35.2
Actinidia26442 Actinidia chinensis HOM05D004206 ORTHO05D003325 2.8e-20 103.2 261 33.7
MELO3C009278.2 Cucumis melo HOM05D004206 ORTHO05D003325 3.1e-19 99.8 261 34.1
Rhsim05G0188200 Rhododendron simsii HOM05D004206 ORTHO05D003325 6.9e-19 98.6 253 36.0
GSVIVG01025530001 Vitis vinifera HOM05D004206 ORTHO05D003325 6.9e-19 98.6 264 35.6
CsaV3_3G035080 Cucumis sativus L. HOM05D004206 ORTHO05D003325 9.1e-19 98.2 261 34.1
Dinv35636 Davidia involucrata HOM05D004206 ORTHO05D003325 3.4e-18 96.3 261 35.6
Gorai.012G101500 Gossypium raimondii HOM05D004206 ORTHO05D003325 3.4e-18 96.3 161 42.2
Duzib093G1984 Durio zibethinus HOM05D004206 ORTHO05D003325 4.5e-18 95.9 230 38.7
Gohir.D04G119400 Gossypium hirsutum HOM05D004206 ORTHO05D003325 5.9e-18 95.5 161 42.2
TAR371G1160 Trochodendron aralioides HOM05D004206 ORTHO05D003325 7.7e-18 95.1 202 42.6
Thecc.05G044400 Theobroma cacao HOM05D004206 ORTHO05D003325 2.9e-17 93.2 222 36.0
CANSAT35G0311 Cannabis sativa HOM05D004206 ORTHO05D003325 3.8e-17 92.8 260 32.7
Aqoxy2G02033 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 1.1e-16 91.3 247 36.4
TAR633G1790 Trochodendron aralioides HOM05D004206 ORTHO05D003325 1.9e-16 90.5 260 35.8
Hma1.2p1_1065F.1_g253750 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 5.5e-16 89.0 276 31.5
Cc06_g02970 Coffea canephora HOM05D004206 ORTHO05D003325 7.2e-16 88.6 270 35.2
Gohir.D09G153700 Gossypium hirsutum HOM05D004206 ORTHO05D003325 7.2e-16 88.6 203 37.9
Ciclev10012502m.g Citrus clementina HOM05D004206 ORTHO05D003325 9.4e-16 88.2 272 34.2
SalBow3G3817 Salvia bowleyana HOM05D004206 ORTHO05D003325 2.7e-15 86.7 212 38.7
TWI74G0821 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 3.6e-15 86.3 245 38.0
PGR004G1990 Punica granatum HOM05D004206 ORTHO05D003325 4.7e-15 85.9 274 32.1
Sc01g0003990 Simmondsia chinensis HOM05D004206 ORTHO05D003325 4.7e-15 85.9 102 52.0
TWI77G0356 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 4.7e-15 85.9 188 41.5
DCAR_009254 Daucus carota HOM05D004206 ORTHO05D003325 6.1e-15 85.5 249 32.5
Hma1.2p1_0350F.1_g132380 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 7.9e-15 85.1 276 30.8
Oeu026485.2 Olea europaea HOM05D004206 ORTHO05D003325 1.4e-14 84.3 162 39.5
Peaxi162Scf00039g01222 Petunia axillaris HOM05D004206 ORTHO05D003325 2.3e-14 83.6 252 34.1
Eucgr.K03159 Eucalyptus grandis HOM05D004206 ORTHO05D003325 3.0e-14 83.2 163 38.0
Duzib106G1929 Durio zibethinus HOM05D004206 ORTHO05D003325 3.9e-14 82.8 207 35.3
Solyc09g010410.3 Solanum lycopersicum HOM05D004206 ORTHO05D003325 3.9e-14 82.8 258 32.6
Oeu036176.1 Olea europaea HOM05D004206 ORTHO05D003325 6.7e-14 82.0 236 33.9
Sopen10g035740 Solanum pennellii HOM05D004206 ORTHO05D003325 6.7e-14 82.0 243 31.7
Gohir.A09G158300 Gossypium hirsutum HOM05D004206 ORTHO05D003325 8.8e-14 81.6 208 36.1
Nitab4.5_0009149g0020 Nicotiana tabacum HOM05D004206 ORTHO05D003325 8.8e-14 81.6 207 35.3
CSS0004803 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 1.1e-13 81.3 275 32.7
Potri.006G082100 Populus trichocarpa HOM05D004206 ORTHO05D003325 1.1e-13 81.3 261 32.2
Nitab4.5_0000349g0070 Nicotiana tabacum HOM05D004206 ORTHO05D003325 2.0e-13 80.5 252 32.5
Nitab4.5_0000527g0130 Nicotiana tabacum HOM05D004206 ORTHO05D003325 2.0e-13 80.5 242 33.5
PGR004G2702 Punica granatum HOM05D004206 ORTHO05D003325 2.6e-13 80.1 96 53.1
Eucgr.A01242 Eucalyptus grandis HOM05D004206 ORTHO05D003325 3.3e-13 79.7 183 36.6
PGSC0003DMG400008929 Solanum tuberosum HOM05D004206 ORTHO05D003325 4.4e-13 79.3 256 31.6
vmacro20128 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 4.4e-13 79.3 247 32.4
Sed0018769 Sechium edule HOM05D004206 ORTHO05D003325 5.7e-13 79.0 179 37.4
Solyc10g086360.2 Solanum lycopersicum HOM05D004206 ORTHO05D003325 5.7e-13 79.0 199 34.2
Sopen09g005150 Solanum pennellii HOM05D004206 ORTHO05D003325 5.7e-13 79.0 256 31.2
PGSC0003DMG401019213 Solanum tuberosum HOM05D004206 ORTHO05D003325 5.7e-13 79.0 246 29.7
CAN.G97.20 Capsicum annuum HOM05D004206 ORTHO05D003325 7.4e-13 78.6 265 32.5
Sc20g0004600 Simmondsia chinensis HOM05D004206 ORTHO05D003325 9.7e-13 78.2 108 50.0
Aa31LG10G9300 Aethionema arabicum HOM05D008508 ORTHO05D003325 1.3e-12 77.8 123 45.5
Manes.08G076700 Manihot esculenta HOM05D004206 ORTHO05D003325 1.7e-12 77.4 136 43.4
Nitab4.5_0002077g0110 Nicotiana tabacum HOM05D004206 ORTHO05D003325 2.2e-12 77.0 255 31.8
ATR0559G289 Amborella trichopoda HOM05D004206 ORTHO05D003325 2.8e-12 76.6 112 46.4
Hma1.2p1_1707F.1_g298550 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 2.8e-12 76.6 145 40.0
SGA_v2.0_scaffold126G33821 Striga asiatica HOM05D004206 ORTHO05D003325 2.8e-12 76.6 278 31.3
Duzib128G2059 Durio zibethinus HOM05D004206 ORTHO05D003325 3.7e-12 76.3 199 35.7
AUR62037393 Chenopodium quinoa HOM05D004206 ORTHO05D003325 6.3e-12 75.5 215 36.3
Actinidia13126 Actinidia chinensis HOM05D004206 ORTHO05D003325 1.1e-11 74.7 249 30.9
Gorai.006G175200 Gossypium raimondii HOM05D004206 ORTHO05D003325 1.1e-11 74.7 205 35.1
Lj3C971T5 Lonicera japonica HOM05D004206 ORTHO05D003325 1.1e-11 74.7 207 34.8
Gohir.A11G326100 Gossypium hirsutum HOM05D004206 ORTHO05D003325 1.4e-11 74.3 164 39.0
Oeu049209.1 Olea europaea HOM05D004206 ORTHO05D003325 1.4e-11 74.3 159 35.8
EL10Ac9g20956 Beta vulgaris HOM05D004206 ORTHO05D003325 1.8e-11 73.9 206 35.4
Gorai.007G375400 Gossypium raimondii HOM05D004206 ORTHO05D003325 2.4e-11 73.6 161 38.5
Gohir.D11G345000 Gossypium hirsutum HOM05D004206 ORTHO05D003325 3.1e-11 73.2 161 37.3
HanXRQChr14g0453751 Helianthus annuus HOM05D004206 ORTHO05D003325 3.1e-11 73.2 247 30.0
MSTRG.5685 Avicennia marina HOM05D004206 ORTHO05D003325 4.1e-11 72.8 141 41.1
Hma1.2p1_1535F.1_g289470 Hydrangea macrophylla HOM05D004206 ORTHO05D003325 9.1e-11 71.6 119 42.0
Peaxi162Scf00407g00067 Petunia axillaris HOM05D004206 ORTHO05D003325 1.2e-10 71.2 251 30.7
TWI53G0070 Tripterygium wilfordii HOM05D004206 ORTHO05D003325 1.5e-10 70.9 248 33.1
Lj2A99T58 Lonicera japonica HOM05D004206 ORTHO05D003325 2.0e-10 70.5 108 44.4
Lsat_1_v5_gn_2_110540 Lactuca sativa HOM05D004206 ORTHO05D003325 3.4e-10 69.7 228 28.1
MSTRG.19101 Avicennia marina HOM05D004206 ORTHO05D003325 5.9e-10 68.9 182 34.1
AUR62041741 Chenopodium quinoa HOM05D004206 ORTHO05D003325 5.9e-10 68.9 212 34.0
HanXRQChr07g0196151 Helianthus annuus HOM05D004206 ORTHO05D003325 7.7e-10 68.6 191 36.1
Lsat_1_v5_gn_1_55680 Lactuca sativa HOM05D004206 ORTHO05D003325 1.0e-09 68.2 137 41.6
Sabra06G0062000 Salix brachista HOM05D004206 ORTHO05D003325 1.0e-09 68.2 273 29.7
Aqoxy4G02996 Aquilegia oxysepala HOM05D004206 ORTHO05D003325 1.3e-09 67.8 257 31.1
CARHR132120 Cardamine hirsuta HOM05D008508 ORTHO05D003325 2.9e-09 66.6 84 52.4
TAR636G0761 Trochodendron aralioides HOM05D004206 ORTHO05D003325 3.8e-09 66.2 139 39.6
CDE02G3836 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 5.0e-09 65.9 141 39.0
PGR004G0289 Punica granatum HOM05D004206 ORTHO05D003325 5.0e-09 65.9 153 39.2
CDE09G0187 Ceratophyllum demersum HOM05D004206 ORTHO05D003325 8.5e-09 65.1 120 44.2
SalBow4G2008 Salvia bowleyana HOM05D004206 ORTHO05D003325 1.1e-08 64.7 137 35.0
Hund00876 Selenicereus undatus HOM05D004206 ORTHO05D003325 1.1e-08 64.7 204 30.4
MSTRG.26756 Avicennia marina HOM05D004206 ORTHO05D003325 1.4e-08 64.3 132 38.6
ECA238G1623 Erigeron canadensis HOM05D000150 ORTHO05D000108 1.4e-08 64.3 151 33.1
MBI05_g10357_MAGBIO Magnolia biondii HOM05D004206 ORTHO05D003325 1.4e-08 64.3 204 36.3
Migut.J00362 Erythranthe guttata HOM05D004206 ORTHO05D003325 1.9e-08 63.9 259 30.5
PSO206G0053 Papaver somniferum HOM05D004206 ORTHO05D003325 1.9e-08 63.9 266 30.1
Manes.09G086700 Manihot esculenta HOM05D004206 ORTHO05D003325 2.5e-08 63.5 142 39.4
BraA09t40129Z Brassica rapa HOM05D008508 ORTHO05D003325 3.2e-08 63.2 104 40.4
Thhalv10017918m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 4.2e-08 62.8 64 53.1
HanXRQChr11g0349321 Helianthus annuus HOM05D004206 ORTHO05D003325 9.4e-08 61.6 63 57.1
PSO339G0439 Papaver somniferum HOM05D004206 ORTHO05D003325 9.4e-08 61.6 236 30.5
Hund07780 Selenicereus undatus HOM05D004206 ORTHO05D003325 9.4e-08 61.6 87 51.7
BcaB01g03773 Brassica carinata HOM05D008508 ORTHO05D003325 1.2e-07 61.2 108 44.4
SGA_v2.0_scaffold75G24932 Striga asiatica HOM05D004206 ORTHO05D003325 2.1e-07 60.5 162 34.0
BcaB02g09283 Brassica carinata HOM05D008508 ORTHO05D003325 3.6e-07 59.7 96 45.8
ECA233G2126 Erigeron canadensis HOM05D004206 ORTHO05D003325 3.6e-07 59.7 177 32.8
Lsat_1_v5_gn_1_55700 Lactuca sativa HOM05D004206 ORTHO05D003325 3.6e-07 59.7 98 49.0
Actinidia07050 Actinidia chinensis HOM05D004206 ORTHO05D003325 4.7e-07 59.3 68 51.5
AL4G33980 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 4.7e-07 59.3 98 41.8
AT2G37480 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 4.7e-07 59.3 101 40.6
COL.COLO4_14855 Corchorus olitorius HOM05D004206 ORTHO05D003325 4.7e-07 59.3 125 38.4
PSO648G0001 Papaver somniferum HOM05D004206 ORTHO05D003325 4.7e-07 59.3 157 35.0
vmacro03102 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 4.7e-07 59.3 114 37.7
ECA248G2846 Erigeron canadensis HOM05D004206 ORTHO05D003325 6.1e-07 58.9 52 59.6
SEGI_05191 Sequoiadendron giganteum HOM05D004206 ORTHO05D003325 6.1e-07 58.9 176 30.7
vmacro08670 Vaccinium macrocarpon HOM05D004206 ORTHO05D003325 6.1e-07 58.9 142 37.3
Aa31LG5G22930 Aethionema arabicum HOM05D008508 ORTHO05D003325 8.0e-07 58.5 100 43.0
PSO339G1969 Papaver somniferum HOM05D004206 ORTHO05D003325 1.0e-06 58.2 92 44.6
Sp4g19810 Schrenkiella parvula HOM05D008508 ORTHO05D003325 1.0e-06 58.2 91 42.9
BcaB01g00256 Brassica carinata HOM05D008508 ORTHO05D003325 1.8e-06 57.4 96 43.8
BraA07t29860Z Brassica rapa HOM05D008508 ORTHO05D003325 1.8e-06 57.4 94 41.5
AT3G53670 Arabidopsis thaliana HOM05D008508 ORTHO05D003325 2.3e-06 57.0 133 36.1
Cpa.g.sc11.170 Carica papaya HOM05D004206 ORTHO05D003325 2.3e-06 57.0 159 32.7
Thhalv10010719m.g Eutrema salsugineum HOM05D008508 ORTHO05D003325 2.3e-06 57.0 172 33.7
THA.LOC104805432 Tarenaya hassleriana HOM05D008508 ORTHO05D003325 2.3e-06 57.0 156 35.9
Actinidia05297 Actinidia chinensis HOM05D004206 ORTHO05D003325 3.0e-06 56.6 159 34.6
BcaC07g39726 Brassica carinata HOM05D008508 ORTHO05D003325 3.9e-06 56.2 95 38.9
BcaC08g44645 Brassica carinata HOM05D008508 ORTHO05D003325 3.9e-06 56.2 93 43.0
C06p21610 Brassica napus HOM05D008508 ORTHO05D003325 3.9e-06 56.2 93 43.0
C08p28980 Brassica napus HOM05D008508 ORTHO05D003325 3.9e-06 56.2 95 38.9
CSS0042901 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 3.9e-06 56.2 262 28.6
Carub.0004s1941 Capsella rubella HOM05D008508 ORTHO05D003325 3.9e-06 56.2 92 39.1
AL5G34640 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 6.7e-06 55.5 181 32.6
A07p21780 Brassica napus HOM05D008508 ORTHO05D003325 6.7e-06 55.5 59 55.9
CSS0043919 Camellia sinensis var. sinensis HOM05D004206 ORTHO05D003325 6.7e-06 55.5 54 53.7
AL4G33940 Arabidopsis lyrata HOM05D008508 ORTHO05D003325 8.8e-06 55.1 99 38.4
C04p65950 Brassica napus HOM05D008508 ORTHO05D003325 8.8e-06 55.1 91 44.0


User provided reference genes

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