Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G043100 Glycine max HOM05D007427 ORTHO05D006413 3.4e-33 144.8 96 100.0
Phvul.007G156700 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 8.1e-19 97.1 100 77.0
Glyma.13G130600 Glycine max HOM05D007427 ORTHO05D006413 9.9e-17 90.1 48 95.8
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 3.9e-13 78.2 61 63.9
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 3.9e-13 78.2 58 67.2
RcHm_v2.0_Chr6g0285411 Rosa chinensis HOM05D007427 ORTHO05D006413 5.1e-13 77.8 67 65.7
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 6.6e-13 77.4 61 65.6
Psat3g049800 Pisum sativum HOM05D007427 ORTHO05D006413 1.1e-12 76.6 59 67.8
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 1.5e-12 76.3 59 66.1
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 3.3e-12 75.1 61 63.9
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 7.3e-12 73.9 59 64.4
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 9.6e-12 73.6 59 61.0
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 1.1e-10 70.1 57 66.7
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 1.8e-10 69.3 58 58.6
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 1.8e-10 69.3 58 60.3
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 4.0e-10 68.2 56 66.1
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 4.0e-10 68.2 55 58.2
MD05G1181500 Malus domestica HOM05D007427 ORTHO05D006413 4.0e-10 68.2 66 54.5
Psat6g064560 Pisum sativum HOM05D007427 ORTHO05D006413 1.5e-09 66.2 65 64.6
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 1.5e-09 66.2 56 64.3
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 2.0e-09 65.9 54 57.4
Prupe.8G208000 Prunus persica HOM05D007427 ORTHO05D006413 2.0e-09 65.9 58 58.6
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 7.6e-09 63.9 59 61.0
Medtr1g069085 Medicago truncatula HOM05D007427 ORTHO05D006413 9.9e-09 63.5 59 69.5
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 1.7e-08 62.8 57 57.9
BcaNung00447 Brassica carinata HOM05D008344 ORTHO05D006413 2.2e-08 62.4 66 54.5
Carub.0007s1161 Capsella rubella HOM05D008344 ORTHO05D006413 2.2e-08 62.4 69 52.2
FAN15G2923 Fragaria x ananassa HOM05D007427 ORTHO05D006413 2.2e-08 62.4 62 59.7
FAN27G1788 Fragaria x ananassa HOM05D007427 ORTHO05D006413 2.2e-08 62.4 62 59.7
FvH4_2g19680 Fragaria vesca HOM05D007427 ORTHO05D006413 2.9e-08 62.0 62 58.1
FAN24G2151 Fragaria x ananassa HOM05D007427 ORTHO05D006413 2.9e-08 62.0 62 58.1
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 3.8e-08 61.6 61 59.0
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 4.9e-08 61.2 71 52.1
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 6.4e-08 60.8 60 53.3
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 8.4e-08 60.5 61 57.4
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 8.4e-08 60.5 75 52.0
AL7G23430 Arabidopsis lyrata HOM05D008344 ORTHO05D006413 1.1e-07 60.1 66 54.5
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 1.1e-07 60.1 62 51.6
A03p58660 Brassica napus HOM05D008344 ORTHO05D006413 1.1e-07 60.1 64 54.7
BraA03t14927Z Brassica rapa HOM05D008344 ORTHO05D006413 1.1e-07 60.1 64 54.7
Glyma.19G171800 Glycine max HOM05D007427 ORTHO05D006413 1.1e-07 60.1 61 50.8
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 1.4e-07 59.7 65 53.8
BolC1t01011H Brassica oleracea HOM05D008344 ORTHO05D006413 2.4e-07 58.9 57 57.9
Cpa.g.sc8.193 Carica papaya HOM05D007427 ORTHO05D006413 3.2e-07 58.5 58 63.8
Thhalv10026613m.g Eutrema salsugineum HOM05D008344 ORTHO05D006413 3.2e-07 58.5 57 56.1
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 3.2e-07 58.5 60 58.3
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 3.2e-07 58.5 60 58.3
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 3.2e-07 58.5 60 58.3
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 4.2e-07 58.2 55 58.2
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 4.2e-07 58.2 75 52.0
Nitab4.5_0000813g0050 Nicotiana tabacum HOM05D014142 ORTHO05D006413 4.2e-07 58.2 63 55.6
A01p08960 Brassica napus HOM05D008344 ORTHO05D011034 7.1e-07 57.4 57 56.1
C01p10500 Brassica napus HOM05D008344 ORTHO05D011034 7.1e-07 57.4 57 56.1
BraA01t00842Z Brassica rapa HOM05D008344 ORTHO05D011034 7.1e-07 57.4 57 56.1
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 7.1e-07 57.4 60 56.7
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 7.1e-07 57.4 63 50.8
Lalb_Chr02g0152981 Lupinus albus HOM05D007427 ORTHO05D006413 7.1e-07 57.4 60 60.0
Duzib138G0919 Durio zibethinus HOM05D007427 ORTHO05D006413 1.2e-06 56.6 81 43.2
AT4G29030 Arabidopsis thaliana HOM05D008344 ORTHO05D006413 1.6e-06 56.2 69 52.2
BcaB03g12592 Brassica carinata HOM05D008344 ORTHO05D006413 2.1e-06 55.8 56 55.4
Duzib138G1712 Durio zibethinus HOM05D007427 ORTHO05D006413 2.1e-06 55.8 38 65.8
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 2.1e-06 55.8 55 58.2
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 2.7e-06 55.5 63 52.4
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 3.5e-06 55.1 61 59.0
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 3.5e-06 55.1 61 59.0
Sp7g26970 Schrenkiella parvula HOM05D008344 ORTHO05D006413 3.5e-06 55.1 57 54.4
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 3.5e-06 55.1 67 50.7
BcaC09g51682 Brassica carinata HOM05D008344 ORTHO05D006413 4.6e-06 54.7 49 59.2
Sopen09g025130 Solanum pennellii HOM05D014142 ORTHO05D006413 4.6e-06 54.7 57 57.9
Nitab4.5_0001657g0050 Nicotiana tabacum HOM05D014142 ORTHO05D006413 6.0e-06 54.3 63 52.4
Nitab4.5_0001740g0060 Nicotiana tabacum HOM05D007427 ORTHO05D006413 7.8e-06 53.9 57 54.4
Sopen09g025140 Solanum pennellii HOM05D014142 ORTHO05D006413 7.8e-06 53.9 58 56.9


User provided reference genes

Program Settings