Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 6.2e-205 717.2 361 100.0
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 7.9e-192 673.7 361 93.1
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 4.9e-186 654.4 359 90.8
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 4.2e-169 598.2 361 84.8
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 3.3e-166 588.6 361 82.3
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 8.2e-165 583.9 362 82.0
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 1.8e-164 582.8 361 80.3
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 2.4e-164 582.4 376 79.0
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 2.6e-163 578.9 367 79.6
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 2.1e-144 516.2 349 75.1
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 8.8e-143 510.8 362 70.2
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 7.5e-142 507.7 363 69.4
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 1.7e-141 506.5 363 70.0
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 3.7e-141 505.4 361 71.7
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 3.7e-141 505.4 364 70.1
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 2.4e-140 502.7 364 67.3
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 3.1e-140 502.3 359 70.2
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 2.0e-139 499.6 364 67.6
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 2.7e-139 499.2 364 67.9
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 1.0e-138 497.3 359 70.2
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.7e-138 496.5 361 69.3
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 2.5e-137 492.7 359 68.5
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 5.5e-137 491.5 363 68.9
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 9.4e-137 490.7 379 67.0
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 1.0e-135 487.3 359 68.8
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 1.4e-135 486.9 362 67.7
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 2.3e-135 486.1 363 67.2
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.0e-134 483.0 362 67.1
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 1.7e-133 479.9 362 66.9
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.8e-133 479.2 363 66.1
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 3.7e-133 478.8 362 66.6
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.4e-132 476.9 361 68.4
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 1.8e-132 476.5 360 65.3
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 1.8e-132 476.5 361 64.5
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 2.4e-132 476.1 370 64.9
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 3.1e-132 475.7 365 66.8
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 4.1e-132 475.3 372 66.1
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 9.1e-132 474.2 360 63.3
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 4.5e-131 471.9 340 70.9
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 1.3e-130 470.3 360 63.3
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.3e-130 470.3 354 66.4
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 1.3e-130 470.3 363 65.6
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 1.7e-130 469.9 364 65.7
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 2.2e-130 469.5 372 64.5
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 2.2e-130 469.5 364 64.8
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 2.9e-130 469.2 360 64.2
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 1.5e-129 466.8 361 63.7
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 1.9e-129 466.5 347 70.3
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 1.9e-129 466.5 365 64.4
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 3.2e-129 465.7 344 70.1
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 3.2e-129 465.7 362 65.5
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 3.2e-129 465.7 363 63.6
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 4.2e-129 465.3 383 61.9
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 4.2e-129 465.3 363 65.6
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 4.2e-129 465.3 360 65.6
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 1.2e-128 463.8 365 64.1
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 2.7e-128 462.6 366 64.8
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 1.0e-127 460.7 375 63.2
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 1.0e-127 460.7 357 65.8
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 3.0e-127 459.1 388 61.1
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 4.0e-127 458.8 361 64.0
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 5.2e-127 458.4 364 63.5
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 1.3e-125 453.8 362 63.5
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 1.7e-125 453.4 364 64.0
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 5.9e-123 444.9 362 63.5
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 1.3e-122 443.7 370 61.4
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 5.0e-122 441.8 384 61.7
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 2.5e-121 439.5 388 59.5
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 4.3e-121 438.7 423 56.5
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 4.3e-121 438.7 364 62.1
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 5.6e-121 438.3 371 61.5
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 1.0e-119 434.1 362 61.3
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 2.3e-119 433.0 361 60.4
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 1.3e-117 427.2 373 59.0
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 8.3e-117 424.5 364 61.0
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 1.4e-116 423.7 362 60.8
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 5.0e-114 415.2 375 58.1
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.9e-113 413.3 365 58.6
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 2.6e-110 402.9 353 62.0
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.2e-109 399.8 363 55.1
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 6.0e-107 391.7 362 57.7
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 4.3e-105 385.6 328 59.8
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 1.7e-101 373.6 330 58.5
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 6.4e-101 371.7 238 78.6
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 3.2e-100 369.4 373 51.2
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 1.2e-99 367.5 358 53.9
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 2.7e-99 366.3 363 55.6
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 2.4e-92 343.2 238 72.7
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 3.3e-89 332.8 238 70.2
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 1.2e-88 330.9 238 70.2
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 6.2e-88 328.6 238 70.6
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 1.4e-87 327.4 364 48.6
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 2.4e-87 326.6 238 68.5
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 2.6e-86 323.2 360 52.5
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 7.6e-86 321.6 238 68.9
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 1.4e-84 317.4 238 68.1
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 2.1e-83 313.5 360 47.2
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 5.6e-81 305.4 335 51.6
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 9.6e-81 304.7 292 57.2
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 1.3e-77 294.3 310 47.7
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 5.4e-76 288.9 362 47.2
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 1.2e-75 287.7 238 61.3
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 3.9e-66 256.1 306 47.1
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 1.8e-58 230.7 303 42.2
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 8.7e-58 228.4 361 40.7
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 2.0e-54 217.2 261 45.6
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 1.5e-41 174.5 365 33.4
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 4.8e-40 169.5 120 65.8
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 1.4e-36 157.9 106 71.7
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 1.6e-35 154.5 127 61.4
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 2.1e-35 154.1 369 32.0
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 5.2e-34 149.4 364 29.4
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 1.6e-30 137.9 90 76.7
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 5.9e-30 136.0 129 55.8
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 2.9e-29 133.7 127 52.8
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 3.2e-28 130.2 121 50.4
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 2.2e-24 117.5 109 54.1
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 5.3e-23 112.8 98 53.1
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 5.0e-21 106.3 189 37.6
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 7.2e-20 102.4 100 50.0
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 1.1e-15 88.6 79 55.7
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 3.1e-15 87.0 94 48.9
Cfa024968 Carpinus fangiana HOM05D006210 ORTHO05D007510 2.3e-13 80.9 231 31.6
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 1.2e-09 68.6 69 44.9
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 2.0e-09 67.8 109 40.4
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 2.0e-09 67.8 109 40.4
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 3.4e-09 67.0 109 41.3
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 3.4e-09 67.0 109 41.3
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 5.7e-09 66.2 109 41.3
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 9.8e-09 65.5 109 41.3
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 9.8e-09 65.5 109 39.4
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 9.8e-09 65.5 155 34.2
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 1.3e-08 65.1 109 40.4
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 2.2e-08 64.3 109 40.4
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 2.2e-08 64.3 109 39.4
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 2.2e-08 64.3 109 38.5
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 2.2e-08 64.3 125 37.6
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 2.8e-08 63.9 109 42.2
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 2.8e-08 63.9 109 42.2
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 6.3e-08 62.8 96 37.5
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 8.3e-08 62.4 109 41.3
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 8.3e-08 62.4 109 41.3
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 1.1e-07 62.0 109 41.3
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.1e-07 62.0 109 39.4
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 1.1e-07 62.0 109 36.7
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 1.1e-07 62.0 143 30.1
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 1.4e-07 61.6 109 37.6
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 1.8e-07 61.2 109 38.5
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 2.4e-07 60.8 109 38.5
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 2.4e-07 60.8 109 38.5
EL10Ac4g09088 Beta vulgaris HOM05D001789 ORTHO05D001755 3.1e-07 60.5 130 34.6
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 3.1e-07 60.5 109 41.3
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 3.1e-07 60.5 109 41.3
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 3.1e-07 60.5 109 35.8
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 3.1e-07 60.5 109 39.4
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 3.1e-07 60.5 109 37.6
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 3.1e-07 60.5 106 35.8
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 4.1e-07 60.1 149 32.9
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 4.1e-07 60.1 108 36.1
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 4.1e-07 60.1 108 36.1
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 5.4e-07 59.7 109 37.6
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 7.0e-07 59.3 109 36.7
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 9.2e-07 58.9 109 35.8
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 9.2e-07 58.9 109 36.7
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 9.2e-07 58.9 142 33.8
Cpa.g.sc617.3 Carica papaya HOM05D001789 ORTHO05D001755 1.2e-06 58.5 125 34.4
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 1.6e-06 58.2 109 38.5
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 1.6e-06 58.2 109 37.6
Ca_03995_v3 Cicer arietinum L. HOM05D000868 ORTHO05D000711 2.0e-06 57.8 113 37.2
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 2.0e-06 57.8 109 33.9
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 2.0e-06 57.8 138 34.8
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 2.0e-06 57.8 109 34.9
Peaxi162Scf00282g00618 Petunia axillaris HOM05D001789 ORTHO05D001755 2.7e-06 57.4 177 29.4
Cc03_g09080 Coffea canephora HOM05D000371 ORTHO05D001484 3.5e-06 57.0 158 30.4
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 3.5e-06 57.0 109 35.8
Glyma.03G086200 Glycine max HOM05D000371 ORTHO05D001484 4.5e-06 56.6 160 32.5
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 5.9e-06 56.2 143 33.6
Mapoly0028s0042 Marchantia polymorpha HOM05D001789 ORTHO05D001755 5.9e-06 56.2 142 31.0
Os04g0352400 Oryza sativa ssp. japonica HOM05D000371 ORTHO05D001484 5.9e-06 56.2 160 32.5
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 7.8e-06 55.8 109 35.8
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 7.8e-06 55.8 175 32.0
MD04G1226000 Malus domestica HOM05D001789 ORTHO05D001755 7.8e-06 55.8 125 34.4
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 7.8e-06 55.8 109 36.7
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 7.8e-06 55.8 109 36.7
VMungo1383G2838 Vigna mungo HOM05D000371 ORTHO05D001484 7.8e-06 55.8 160 30.6


User provided reference genes

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