Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 1.4e-96 356.3 180 100.0
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 2.1e-92 342.4 180 95.6
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 3.1e-88 328.6 180 91.1
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 7.6e-87 323.9 180 90.0
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 5.3e-80 301.2 180 83.3
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 5.5e-77 291.2 180 83.3
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 1.6e-76 289.7 181 80.7
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 2.7e-76 288.9 181 82.3
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 2.5e-74 282.3 180 78.3
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 5.7e-74 281.2 182 80.2
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 1.3e-73 280.0 180 79.4
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 1.3e-73 280.0 180 79.4
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 4.8e-73 278.1 180 77.8
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 9.3e-69 263.8 179 74.3
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 1.6e-68 263.1 181 75.1
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 4.6e-68 261.5 182 73.6
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 1.0e-67 260.4 182 73.1
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 1.8e-67 259.6 182 73.1
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 3.9e-67 258.5 183 74.3
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 6.7e-67 257.7 181 73.5
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 8.7e-67 257.3 180 72.8
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 1.5e-66 256.5 182 73.1
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 3.3e-66 255.4 183 73.2
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 5.7e-66 254.6 183 73.8
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 2.2e-65 252.7 184 73.9
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 2.8e-65 252.3 182 72.5
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 3.7e-65 251.9 183 73.8
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 3.7e-65 251.9 182 72.0
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 4.8e-65 251.5 180 71.7
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 1.4e-64 250.0 185 72.4
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 2.4e-64 249.2 184 70.7
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 3.1e-64 248.8 184 69.6
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 5.3e-64 248.1 181 71.8
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 9.1e-64 247.3 181 70.2
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 1.5e-63 246.5 181 71.3
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 1.5e-63 246.5 181 71.3
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 2.0e-63 246.1 181 71.3
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 2.0e-63 246.1 181 71.3
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 2.6e-63 245.7 182 69.8
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 4.5e-63 245.0 185 70.3
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 7.7e-63 244.2 182 69.8
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 2.9e-62 242.3 181 70.7
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 2.9e-62 242.3 181 69.6
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 3.8e-62 241.9 181 69.6
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 3.8e-62 241.9 184 70.1
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 6.5e-62 241.1 184 69.6
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.4e-61 240.0 182 70.3
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 1.9e-61 239.6 186 68.3
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 1.9e-61 239.6 183 68.9
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 5.5e-61 238.0 181 71.3
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 5.5e-61 238.0 182 69.8
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 5.5e-61 238.0 182 69.8
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 5.5e-61 238.0 181 69.6
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 7.2e-61 237.7 183 68.3
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 9.4e-61 237.3 182 69.2
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 1.2e-60 236.9 179 69.8
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 1.6e-60 236.5 181 68.5
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 2.1e-60 236.1 180 67.2
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 3.6e-60 235.3 186 68.8
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.4e-59 233.4 181 69.6
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 1.4e-59 233.4 184 69.0
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 1.4e-59 233.4 151 76.8
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 1.8e-59 233.0 167 71.3
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 2.3e-59 232.6 181 68.0
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 3.0e-59 232.3 183 67.2
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 3.9e-59 231.9 183 67.2
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 3.9e-59 231.9 147 81.0
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 3.3e-58 228.8 181 62.4
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 3.3e-58 228.8 184 65.2
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 4.4e-58 228.4 152 75.0
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 4.4e-58 228.4 151 77.5
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 1.7e-57 226.5 183 66.7
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 2.2e-57 226.1 182 65.4
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 2.2e-57 226.1 182 64.8
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 5.3e-56 221.5 184 64.7
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 1.2e-55 220.3 171 66.1
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 3.4e-55 218.8 153 69.9
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 7.7e-55 217.6 154 72.7
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 1.0e-54 217.2 183 65.0
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 1.7e-54 216.5 183 61.7
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 2.9e-54 215.7 181 62.4
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 8.5e-54 214.2 154 68.8
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 8.5e-54 214.2 159 65.4
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 1.1e-53 213.8 155 70.3
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 1.4e-53 213.4 154 68.2
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 1.4e-53 213.4 116 87.9
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 1.9e-53 213.0 145 72.4
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 1.9e-53 213.0 182 63.2
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 2.5e-53 212.6 183 59.0
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 3.2e-53 212.2 183 59.6
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 5.5e-53 211.5 115 89.6
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 7.2e-53 211.1 183 57.9
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 1.2e-52 210.3 147 68.7
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 2.1e-52 209.5 114 86.8
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 7.9e-52 207.6 116 86.2
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 1.0e-51 207.2 185 62.7
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 1.4e-51 206.8 183 57.9
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 5.2e-51 204.9 183 60.7
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 5.2e-51 204.9 175 61.1
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 1.1e-50 203.8 181 58.0
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 1.1e-50 203.8 182 59.3
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 2.6e-50 202.6 181 57.5
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 5.7e-50 201.4 185 61.6
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 7.4e-50 201.1 115 81.7
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 7.4e-50 201.1 182 59.3
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 7.4e-50 201.1 118 79.7
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 9.7e-50 200.7 176 58.0
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 9.7e-50 200.7 185 60.0
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 9.7e-50 200.7 145 66.9
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 4.8e-49 198.4 181 63.0
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 6.3e-49 198.0 175 65.1
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 1.8e-48 196.4 184 59.8
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 2.7e-44 182.6 172 58.7
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 5.7e-42 174.9 118 69.5
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 2.2e-41 172.9 115 73.0
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 3.7e-41 172.2 108 74.1
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 7.0e-40 167.9 116 67.2
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 4.7e-36 155.2 110 62.7
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 5.7e-34 148.3 108 62.0
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 1.3e-33 147.1 106 62.3
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 2.2e-33 146.4 111 64.9
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 6.3e-33 144.8 113 58.4
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.8e-25 119.4 171 46.2
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 2.9e-22 109.4 59 88.1
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 2.9e-22 109.4 59 88.1
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 1.2e-20 104.0 102 60.8
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 1.5e-18 97.1 66 71.2
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 1.6e-15 87.0 52 76.9
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 8.6e-14 81.3 110 47.3


User provided reference genes

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