Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G039652 Glycine max HOM05D000074 ORTHO05D215543 1.5e-53 212.6 106 100.0
Glyma.13G126000 Glycine max HOM05D000074 ORTHO05D000220 1.1e-37 159.8 94 83.0
Lj5g0024099 Lotus japonicus HOM05D000074 ORTHO05D000220 2.3e-27 125.6 101 71.3
Phvul.007G190300 Phaseolus vulgaris HOM05D000074 ORTHO05D000220 1.9e-24 115.9 88 72.7
Ca_09655_v3 Cicer arietinum L. HOM05D000074 ORTHO05D000220 4.1e-24 114.8 97 67.0
TPR.G5682 Trifolium pratense HOM05D000074 ORTHO05D000220 1.3e-22 109.8 98 66.3
Medtr1g069605 Medicago truncatula HOM05D000074 ORTHO05D000220 5.0e-22 107.8 98 65.3
Psat6g061600 Pisum sativum HOM05D000074 ORTHO05D000220 2.1e-20 102.4 98 63.3
Lalb_Chr21g0314081 Lupinus albus HOM05D000074 ORTHO05D000220 3.6e-20 101.7 101 58.4
arahy.Tifrunner.gnm1.ann1.S1R27D Arachis hypogaea HOM05D000074 ORTHO05D000220 5.2e-19 97.8 94 59.6
arahy.Tifrunner.gnm1.ann1.65D6GP Arachis hypogaea HOM05D000074 ORTHO05D000220 8.9e-19 97.1 94 59.6
COL.COLO4_32934 Corchorus olitorius HOM05D000074 ORTHO05D000220 7.8e-15 84.0 112 48.2
Glyma.08G088400 Glycine max HOM05D000074 ORTHO05D000220 1.3e-14 83.2 88 54.5
Thecc.01G252400 Theobroma cacao HOM05D000074 ORTHO05D000220 1.3e-14 83.2 90 54.4
Duzib211G0482 Durio zibethinus HOM05D000074 ORTHO05D000220 1.7e-14 82.8 90 55.6
GSVIVG01028402001 Vitis vinifera HOM05D000074 ORTHO05D000220 3.0e-14 82.0 92 53.3
Glyma.15G157100 Glycine max HOM05D000074 ORTHO05D000220 3.9e-14 81.6 89 57.3
Phvul.002G188600 Phaseolus vulgaris HOM05D000074 ORTHO05D000220 8.6e-14 80.5 88 53.4
Glyma.09G051100 Glycine max HOM05D000074 ORTHO05D000220 1.5e-13 79.7 89 56.2
Gohir.D07G210700 Gossypium hirsutum HOM05D000074 ORTHO05D000220 2.5e-13 79.0 95 52.6
Gorai.001G238100 Gossypium raimondii HOM05D000074 ORTHO05D000220 2.5e-13 79.0 95 52.6
MD00G1061100 Malus domestica HOM05D000074 ORTHO05D000220 2.5e-13 79.0 92 53.3
Prupe.8G216900 Prunus persica HOM05D000074 ORTHO05D000220 2.5e-13 79.0 101 50.5
Dinv16389 Davidia involucrata HOM05D000074 ORTHO05D000220 7.3e-13 77.4 92 55.4
Gohir.A07G204700 Gossypium hirsutum HOM05D000074 ORTHO05D000220 7.3e-13 77.4 95 51.6
COL.COLO4_10590 Corchorus olitorius HOM05D000074 ORTHO05D000220 1.2e-12 76.6 91 52.7
Dinv34664 Davidia involucrata HOM05D000074 ORTHO05D000220 1.6e-12 76.3 93 54.8
MD05G1189700 Malus domestica HOM05D000074 ORTHO05D000220 1.6e-12 76.3 92 52.2
Phvul.009G242700 Phaseolus vulgaris HOM05D000074 ORTHO05D000220 2.1e-12 75.9 88 52.3
arahy.Tifrunner.gnm1.ann1.L22S2R Arachis hypogaea HOM05D000074 ORTHO05D000220 2.8e-12 75.5 88 53.4
THA.LOC104826050 Tarenaya hassleriana HOM05D000074 ORTHO05D000220 2.8e-12 75.5 90 56.7
VMungo0720G1750 Vigna mungo HOM05D000074 ORTHO05D000220 6.2e-12 74.3 48 79.2
Lj6g0026167 Lotus japonicus HOM05D000074 ORTHO05D000220 8.1e-12 73.9 92 50.0
VMungo1309G0240 Vigna mungo HOM05D000074 ORTHO05D000220 8.1e-12 73.9 88 51.1
arahy.Tifrunner.gnm1.ann1.GVD2R3 Arachis hypogaea HOM05D000074 ORTHO05D000220 1.1e-11 73.6 90 51.1
arahy.Tifrunner.gnm1.ann1.J8M6QI Arachis hypogaea HOM05D000074 ORTHO05D000220 1.1e-11 73.6 88 54.5
arahy.Tifrunner.gnm1.ann1.KQ35EQ Arachis hypogaea HOM05D000074 ORTHO05D000220 1.1e-11 73.6 90 51.1
ClCG06G001480 Citrullus lanatus HOM05D000074 ORTHO05D000220 1.1e-11 73.6 114 41.2
Rhsim01G0261300 Rhododendron simsii HOM05D000074 ORTHO05D000220 1.1e-11 73.6 91 49.5
Cpa.g.sc165.53 Carica papaya HOM05D000074 ORTHO05D000220 1.4e-11 73.2 91 50.5
Ca_01997_v3 Cicer arietinum L. HOM05D000074 ORTHO05D000220 1.4e-11 73.2 89 50.6
Lalb_Chr20g0114291 Lupinus albus HOM05D000074 ORTHO05D000220 1.4e-11 73.2 89 52.8
Cfa002476 Carpinus fangiana HOM05D000074 ORTHO05D000220 5.2e-11 71.2 89 52.8
Aqoxy5G00163 Aquilegia oxysepala HOM05D000074 ORTHO05D000220 6.8e-11 70.9 118 39.0
Aa31LG5G3240 Aethionema arabicum HOM05D000074 ORTHO05D000220 8.9e-11 70.5 94 46.8
Gohir.A08G045800 Gossypium hirsutum HOM05D000074 ORTHO05D000220 1.2e-10 70.1 91 50.5
Gohir.D08G056300 Gossypium hirsutum HOM05D000074 ORTHO05D000220 1.2e-10 70.1 91 50.5
Gorai.004G057400 Gossypium raimondii HOM05D000074 ORTHO05D000220 1.2e-10 70.1 91 50.5
Nn3g19755 Nelumbo nucifera HOM05D000074 ORTHO05D000220 1.2e-10 70.1 88 51.1
TWI12G0686 Tripterygium wilfordii HOM05D000074 ORTHO05D000220 2.0e-10 69.3 114 42.1
CiPaw.04G189900 Carya illinoinensis HOM05D000074 ORTHO05D000220 5.8e-10 67.8 91 50.5
CsaV3_6G007440 Cucumis sativus L. HOM05D000074 ORTHO05D000220 5.8e-10 67.8 93 46.2
DCAR_012579 Daucus carota HOM05D000074 ORTHO05D000220 5.8e-10 67.8 91 50.5
CiPaw.03G270000 Carya illinoinensis HOM05D000074 ORTHO05D000220 7.6e-10 67.4 101 45.5
MELO3C022385.2 Cucumis melo HOM05D000074 ORTHO05D000220 7.6e-10 67.4 93 46.2
CARHR179260 Cardamine hirsuta HOM05D000074 ORTHO05D000220 1.3e-09 66.6 94 46.8
AUR62025448 Chenopodium quinoa HOM05D000074 ORTHO05D000220 2.9e-09 65.5 104 42.3
Hma1.2p1_0273F.1_g109310 Hydrangea macrophylla HOM05D000074 ORTHO05D000220 2.9e-09 65.5 91 45.1
Lj2C1144T9 Lonicera japonica HOM05D000074 ORTHO05D000220 2.9e-09 65.5 92 46.7
FAN15G2382 Fragaria x ananassa HOM05D000074 ORTHO05D000220 3.8e-09 65.1 89 49.4
FAN20G0138 Fragaria x ananassa HOM05D000074 ORTHO05D000220 3.8e-09 65.1 89 49.4
FAN27G0894 Fragaria x ananassa HOM05D000074 ORTHO05D000220 3.8e-09 65.1 89 49.4
Psat1g149960 Pisum sativum HOM05D000074 ORTHO05D000220 3.8e-09 65.1 89 49.4
QL09p041111 Quercus lobata HOM05D000074 ORTHO05D000220 3.8e-09 65.1 92 46.7
RcHm_v2.0_Chr6g0286921 Rosa chinensis HOM05D000074 ORTHO05D000220 3.8e-09 65.1 89 49.4
Potri.002G257900 Populus trichocarpa HOM05D000074 ORTHO05D000220 6.4e-09 64.3 100 48.0
vmacro14806 Vaccinium macrocarpon HOM05D000074 ORTHO05D000220 6.4e-09 64.3 99 42.4
CSS0016274 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D000220 8.4e-09 63.9 91 48.4
FvH4_2g20740 Fragaria vesca HOM05D000074 ORTHO05D000220 8.4e-09 63.9 90 50.0
FAN24G1785 Fragaria x ananassa HOM05D000074 ORTHO05D000220 8.4e-09 63.9 90 50.0
AL8G16050 Arabidopsis lyrata HOM05D000074 ORTHO05D000220 1.1e-08 63.5 92 47.8
AT5G44030 Arabidopsis thaliana HOM05D000074 ORTHO05D000220 1.4e-08 63.2 105 44.8
Carub.0008s0451 Capsella rubella HOM05D000074 ORTHO05D000220 1.4e-08 63.2 94 46.8
Medtr2g035780 Medicago truncatula HOM05D000074 ORTHO05D000220 1.4e-08 63.2 88 46.6
TAR636G3464 Trochodendron aralioides HOM05D000074 ORTHO05D000220 3.2e-08 62.0 91 45.1
CSS0012493 Camellia sinensis var. sinensis HOM05D000074 ORTHO05D000220 4.1e-08 61.6 92 46.7
PSO674G0094 Papaver somniferum HOM05D000074 ORTHO05D000220 5.4e-08 61.2 89 43.8
PSO832G2919 Papaver somniferum HOM05D000074 ORTHO05D000220 9.2e-08 60.5 89 43.8
Ciclev10018639m.g Citrus clementina HOM05D000074 ORTHO05D000220 1.2e-07 60.1 92 45.7
Ah.15g092660 Amaranthus hybridus HOM05D000074 ORTHO05D000220 2.1e-07 59.3 104 39.4
Sabra02G0196300 Salix brachista HOM05D000074 ORTHO05D000220 2.1e-07 59.3 116 43.1
Sed0005953 Sechium edule HOM05D000074 ORTHO05D000220 3.5e-07 58.5 130 36.2
Hund18278 Selenicereus undatus HOM05D000074 ORTHO05D000220 4.6e-07 58.2 128 36.7
PGR031G0509 Punica granatum HOM05D000074 ORTHO05D000220 7.8e-07 57.4 98 44.9
Sp2g08870 Schrenkiella parvula HOM05D000074 ORTHO05D000220 7.8e-07 57.4 94 42.6
Manes.12G035500 Manihot esculenta HOM05D000074 ORTHO05D000220 1.7e-06 56.2 95 41.1
Manes.13G038000 Manihot esculenta HOM05D000074 ORTHO05D000220 1.7e-06 56.2 94 44.7
CiPaw.04G190000 Carya illinoinensis HOM05D000074 ORTHO05D000220 3.0e-06 55.5 89 39.3
Peaxi162Scf00415g00078 Petunia axillaris HOM05D000074 ORTHO05D000220 3.0e-06 55.5 92 45.7
BcaC06g34601 Brassica carinata HOM05D000074 ORTHO05D000220 3.9e-06 55.1 93 43.0
C07p26650 Brassica napus HOM05D000074 ORTHO05D000220 3.9e-06 55.1 93 43.0
BolC7t43194H Brassica oleracea HOM05D000074 ORTHO05D000220 3.9e-06 55.1 93 43.0
Sc05g0003110 Simmondsia chinensis HOM05D000074 ORTHO05D000220 3.9e-06 55.1 100 41.0
BcaC06g31660 Brassica carinata HOM05D000074 ORTHO05D000220 5.1e-06 54.7 93 40.9
Oeu060515.4 Olea europaea HOM05D000074 ORTHO05D000220 6.6e-06 54.3 85 45.9


User provided reference genes

Program Settings