Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G028600 Glycine max HOM05D007386 ORTHO05D009210 2.6e-78 295.4 164 100.0
Glyma.02G145500 Glycine max HOM05D007386 ORTHO05D009210 5.7e-73 277.7 164 88.4
VMungo0720G1463 Vigna mungo HOM05D007386 ORTHO05D009210 1.5e-65 253.1 165 83.0
Phvul.007G173800 Phaseolus vulgaris HOM05D007386 ORTHO05D009210 1.3e-61 240.0 165 79.4
Medtr1g071630 Medicago truncatula HOM05D007386 ORTHO05D009210 3.6e-59 231.9 169 72.2
Lalb_Chr06g0162851 Lupinus albus HOM05D007386 ORTHO05D009210 2.3e-58 229.2 166 73.5
TPR.G25681 Trifolium pratense HOM05D007386 ORTHO05D009210 2.4e-55 219.2 181 73.5
Ca_09739_v3 Cicer arietinum L. HOM05D007386 ORTHO05D009210 1.6e-54 216.5 169 75.1
arahy.Tifrunner.gnm1.ann1.ZF8TUR Arachis hypogaea HOM05D007386 ORTHO05D009210 3.6e-51 205.3 170 72.4
Psat6g059880 Pisum sativum HOM05D007386 ORTHO05D009210 6.1e-51 204.5 169 71.6
arahy.Tifrunner.gnm1.ann1.JNW8E7 Arachis hypogaea HOM05D007386 ORTHO05D009210 1.2e-49 200.3 170 71.8
QL12p020752 Quercus lobata HOM05D007386 ORTHO05D009210 1.7e-45 186.4 181 60.8
Manes.05G078600 Manihot esculenta HOM05D007386 ORTHO05D009210 2.3e-45 186.0 179 60.3
HanXRQChr10g0282251 Helianthus annuus HOM05D007386 ORTHO05D009210 1.1e-44 183.7 174 60.9
CiPaw.07G088700 Carya illinoinensis HOM05D007386 ORTHO05D009210 3.3e-44 182.2 183 61.7
Cfa006177 Carpinus fangiana HOM05D007386 ORTHO05D009210 5.6e-44 181.4 184 57.6
Sc05g0001200 Simmondsia chinensis HOM05D007386 ORTHO05D009210 5.6e-44 181.4 175 60.6
Prupe.8G236700 Prunus persica HOM05D007386 ORTHO05D009210 1.2e-43 180.3 182 59.3
Duzib168G0678 Durio zibethinus HOM05D007386 ORTHO05D009210 6.1e-43 177.9 172 59.9
Nn6g34127 Nelumbo nucifera HOM05D007386 ORTHO05D009210 6.1e-43 177.9 179 58.7
Lj5g0008996 Lotus japonicus HOM05D007386 ORTHO05D009210 6.8e-42 174.5 165 66.1
vmacro02599 Vaccinium macrocarpon HOM05D007386 ORTHO05D009210 6.8e-42 174.5 185 57.3
TAR636G2514 Trochodendron aralioides HOM05D007386 ORTHO05D009210 1.5e-41 173.3 183 56.3
ECA247G1531 Erigeron canadensis HOM05D007386 ORTHO05D009210 3.4e-41 172.2 178 56.7
Eucgr.K03341 Eucalyptus grandis HOM05D007386 ORTHO05D009210 3.4e-41 172.2 178 57.9
PGR044G1958 Punica granatum HOM05D007386 ORTHO05D009210 3.4e-41 172.2 177 54.2
Gohir.D08G093000 Gossypium hirsutum HOM05D007386 ORTHO05D009210 5.8e-41 171.4 177 58.2
GSVIVG01001191001 Vitis vinifera HOM05D007386 ORTHO05D009210 7.5e-41 171.0 171 62.0
EL10Ac3g07280 Beta vulgaris HOM05D007386 ORTHO05D009210 1.3e-40 170.2 170 60.0
TWI18G1441 Tripterygium wilfordii HOM05D007386 ORTHO05D009210 1.3e-40 170.2 170 58.2
Ah.04g150680 Amaranthus hybridus HOM05D007386 ORTHO05D009210 1.7e-40 169.9 171 63.7
CSS0002766 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 1.7e-40 169.9 168 56.0
Actinidia00789 Actinidia chinensis HOM05D007386 ORTHO05D009210 2.2e-40 169.5 183 53.0
Sabra05G0162700 Salix brachista HOM05D007386 ORTHO05D009210 2.2e-40 169.5 170 61.8
Gorai.004G098600 Gossypium raimondii HOM05D007386 ORTHO05D009210 4.9e-40 168.3 177 57.6
Rhsim13G0027600 Rhododendron simsii HOM05D007386 ORTHO05D009210 6.4e-40 167.9 185 52.4
Cpa.g.sc95.34 Carica papaya HOM05D007386 ORTHO05D009210 8.3e-40 167.5 173 57.8
SalBow4G1029 Salvia bowleyana HOM05D007386 ORTHO05D009210 1.1e-39 167.2 176 55.1
MSTRG.21545 Avicennia marina HOM05D007386 ORTHO05D009210 1.4e-39 166.8 124 71.8
AUR62018389 Chenopodium quinoa HOM05D000027 ORTHO05D000066 1.4e-39 166.8 168 60.7
Gohir.A08G081100 Gossypium hirsutum HOM05D007386 ORTHO05D009210 2.4e-39 166.0 177 63.3
AUR62030273 Chenopodium quinoa HOM05D007386 ORTHO05D009210 4.1e-39 165.2 172 61.0
Haze_04670 Corylus avellana HOM05D007386 ORTHO05D009210 4.1e-39 165.2 126 69.0
Potri.005G213000 Populus trichocarpa HOM05D007386 ORTHO05D009210 2.0e-38 162.9 168 60.1
Thecc.09G179900 Theobroma cacao HOM05D007386 ORTHO05D009210 7.8e-38 161.0 174 60.3
CSS0036584 Camellia sinensis var. sinensis HOM05D007386 ORTHO05D009210 1.0e-37 160.6 182 51.1
COL.COLO4_25451 Corchorus olitorius HOM05D007386 ORTHO05D009210 1.0e-37 160.6 173 61.3
Oeu059791.1 Olea europaea HOM05D007386 ORTHO05D009210 1.0e-37 160.6 180 51.7
DCAR_018437 Daucus carota HOM05D007386 ORTHO05D009210 2.3e-37 159.5 175 56.0
CANSAT78G1636 Cannabis sativa HOM05D007386 ORTHO05D009210 5.0e-37 158.3 180 53.3
CDE06G2441 Ceratophyllum demersum HOM05D007386 ORTHO05D009210 8.0e-35 151.0 178 54.5
ClCG09G007290 Citrullus lanatus HOM05D007386 ORTHO05D009210 6.8e-34 147.9 181 50.3
MELO3C015793.2 Cucumis melo HOM05D007386 ORTHO05D009210 2.6e-33 146.0 189 51.3
MBI11_g22999_MAGBIO Magnolia biondii HOM05D007386 ORTHO05D009210 2.6e-33 146.0 126 63.5
ATR0665G488 Amborella trichopoda HOM05D007386 ORTHO05D009210 7.5e-33 144.4 123 65.9
MD03G1260500 Malus domestica HOM05D007386 ORTHO05D009210 9.8e-33 144.1 173 50.3
Cc01_g19160 Coffea canephora HOM05D007386 ORTHO05D009210 2.9e-32 142.5 192 54.7
HPP92_020354 Vanilla planifolia HOM05D007386 ORTHO05D009210 4.9e-32 141.7 129 62.0
FAN15G1284 Fragaria x ananassa HOM05D007386 ORTHO05D009210 6.4e-32 141.4 177 56.5
Dinv34778 Davidia involucrata HOM05D002659 ORTHO05D002940 7.0e-31 137.9 109 70.6
Lsat_1_v5_gn_9_6101 Lactuca sativa HOM05D007386 ORTHO05D009210 2.1e-30 136.3 177 57.1
Aqoxy5G00426 Aquilegia oxysepala HOM05D007386 ORTHO05D009210 6.0e-30 134.8 174 54.0
Hund09518 Selenicereus undatus HOM05D007386 ORTHO05D009210 1.3e-29 133.7 133 56.4
THA.LOC104813154 Tarenaya hassleriana HOM05D007386 ORTHO05D009210 3.0e-29 132.5 134 53.7
CARHR252930 Cardamine hirsuta HOM05D007386 ORTHO05D009210 8.6e-29 131.0 124 55.6
Sp6g04310 Schrenkiella parvula HOM05D007386 ORTHO05D009210 1.5e-28 130.2 137 53.3
AT4G04614 Arabidopsis thaliana HOM05D007386 ORTHO05D009210 1.9e-28 129.8 135 54.1
Aa31LG9G9760 Aethionema arabicum HOM05D000698 ORTHO05D009210 3.3e-28 129.0 135 52.6
BcaB01g01820 Brassica carinata HOM05D007386 ORTHO05D009210 4.3e-28 128.6 124 54.8
MD11G1280800 Malus domestica HOM05D007386 ORTHO05D009210 4.3e-28 128.6 173 46.2
CsaV3_7G027780 Cucumis sativus L. HOM05D007386 ORTHO05D009210 5.6e-28 128.3 195 49.2
Carub.0006s3245 Capsella rubella HOM05D007386 ORTHO05D009210 1.6e-27 126.7 135 51.9
Thhalv10029017m.g Eutrema salsugineum HOM05D007386 ORTHO05D009210 1.6e-27 126.7 134 52.2
BcaC04g21312 Brassica carinata HOM05D007386 ORTHO05D009210 2.8e-27 125.9 137 51.8
A09p26200 Brassica napus HOM05D007386 ORTHO05D009210 2.8e-27 125.9 124 54.0
C09p33290 Brassica napus HOM05D007386 ORTHO05D009210 2.8e-27 125.9 137 51.8
BolC9t56165H Brassica oleracea HOM05D007386 ORTHO05D009210 2.8e-27 125.9 137 51.8
BraA09t38188Z Brassica rapa HOM05D007386 ORTHO05D009210 2.8e-27 125.9 124 54.0
Ciclev10022575m.g Citrus clementina HOM05D007386 ORTHO05D009210 2.8e-27 125.9 166 53.0
AL6G48080 Arabidopsis lyrata HOM05D007386 ORTHO05D009210 4.7e-27 125.2 134 52.2
Nitab4.5_0000252g0090 Nicotiana tabacum HOM05D007386 ORTHO05D009210 6.2e-27 124.8 181 45.3
FvH4_2g23140 Fragaria vesca HOM05D007386 ORTHO05D009210 1.1e-26 124.0 182 46.2
FAN24G1308 Fragaria x ananassa HOM05D007386 ORTHO05D009210 2.3e-26 122.9 178 46.6
unitig_0.g1138 Utricularia gibba HOM05D007386 ORTHO05D009210 3.1e-26 122.5 169 50.9
Migut.D00331 Erythranthe guttata HOM05D007386 ORTHO05D009210 5.2e-26 121.7 166 55.4
Sed0008482 Sechium edule HOM05D007386 ORTHO05D009210 5.2e-26 121.7 182 46.7
Nitab4.5_0009452g0010 Nicotiana tabacum HOM05D007386 ORTHO05D009210 8.9e-26 120.9 184 44.0
PSO210G0643 Papaver somniferum HOM05D007386 ORTHO05D009210 3.4e-25 119.0 150 51.3
SGA_v2.0_scaffold1G00514 Striga asiatica HOM05D007386 ORTHO05D009210 3.4e-25 119.0 182 51.6
FAN20G3170 Fragaria x ananassa HOM05D007386 ORTHO05D009210 9.9e-25 117.5 179 50.8
PSO832G2845 Papaver somniferum HOM05D007386 ORTHO05D009210 9.9e-25 117.5 139 51.8
SMO351G0424 Selaginella moellendorffii HOM05D007386 ORTHO05D009210 2.9e-24 115.9 125 51.2
Atru.chr5.1489 Acer truncatum HOM05D007386 ORTHO05D009210 8.3e-24 114.4 176 50.0
Peaxi162Scf00230g01010 Petunia axillaris HOM05D007386 ORTHO05D009210 8.3e-24 114.4 165 46.1
RcHm_v2.0_Chr6g0290391 Rosa chinensis HOM05D007386 ORTHO05D009210 3.2e-23 112.5 176 43.8
Pp3c25_4880 Physcomitrium patens HOM05D007386 ORTHO05D009210 2.3e-21 106.3 148 43.9
arahy.Tifrunner.gnm1.ann1.90IGTQ Arachis hypogaea HOM05D007386 ORTHO05D009210 8.1e-19 97.8 110 60.0
FAN27G1502 Fragaria x ananassa HOM05D007386 ORTHO05D009210 3.8e-16 89.0 123 47.2
Mapoly0035s0101 Marchantia polymorpha HOM05D007386 ORTHO05D009210 7.1e-15 84.7 148 39.9
Sopen09g027270 Solanum pennellii HOM05D007386 ORTHO05D009210 1.6e-14 83.6 176 37.5
arahy.Tifrunner.gnm1.ann1.92TB4L Arachis hypogaea HOM05D007386 ORTHO05D009210 6.0e-14 81.6 80 65.0
Os06g0630300 Oryza sativa ssp. japonica HOM05D007386 ORTHO05D009210 7.8e-14 81.3 183 35.0
Solyc09g065510.3 Solanum lycopersicum HOM05D007386 ORTHO05D009210 8.7e-13 77.8 177 35.0
SGA_v2.0_scaffold244G44361 Striga asiatica HOM05D007386 ORTHO05D009210 2.5e-12 76.3 168 40.5
SEGI_27286 Sequoiadendron giganteum HOM05D007386 ORTHO05D009210 1.2e-11 73.9 109 40.4
PGSC0003DMG400019353 Solanum tuberosum HOM05D007386 ORTHO05D009210 4.7e-11 72.0 176 34.7
CAN.G1105.2 Capsicum annuum HOM05D007386 ORTHO05D009210 6.9e-10 68.2 170 35.3
Cre17.g717700 Chlamydomonas reinhardtii HOM05D007386 ORTHO05D009210 2.9e-08 62.8 133 36.8


User provided reference genes

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