Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1739.5 916 100.0
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 0.0e+00 1629.8 918 95.0
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 0.0e+00 1511.5 919 87.9
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 0.0e+00 1490.7 919 86.9
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 0.0e+00 1363.2 934 79.0
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 0.0e+00 1309.7 861 80.7
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 0.0e+00 1309.3 933 76.3
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 0.0e+00 1298.9 921 76.7
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 0.0e+00 1263.4 932 75.3
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 0.0e+00 1224.9 997 69.7
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 0.0e+00 1181.4 847 76.3
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 0.0e+00 1080.9 926 65.7
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1080.1 911 64.3
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 0.0e+00 1077.8 899 64.6
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 0.0e+00 1077.4 935 64.3
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 6.3e-312 1073.5 895 64.7
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 1.3e-310 1069.7 899 64.2
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 9.9e-308 1060.1 973 62.3
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 4.9e-307 1057.7 924 63.1
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 3.9e-304 1048.1 917 63.7
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 8.7e-304 1047.0 870 64.9
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 3.6e-302 1041.6 910 62.9
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 4.8e-302 1041.2 904 62.8
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.4e-301 1039.6 933 62.3
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 5.3e-301 1037.7 922 63.0
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 4.4e-300 1034.6 909 62.0
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 6.4e-299 1030.8 892 63.1
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 4.2e-298 1028.1 932 61.8
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 3.5e-297 1025.0 939 61.7
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 1.7e-296 1022.7 864 63.7
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 1.1e-295 1020.0 906 62.5
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 9.6e-295 1016.9 895 62.7
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.5e-292 1009.6 897 61.1
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 4.5e-292 1008.1 899 61.7
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 9.9e-292 1006.9 916 61.1
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 2.9e-291 1005.4 895 62.1
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 6.4e-291 1004.2 923 61.4
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 1.4e-290 1003.0 919 61.3
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 1.2e-289 1000.0 921 59.5
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 7.9e-289 997.3 925 61.3
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 1.8e-288 996.1 907 60.4
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 1.8e-288 996.1 887 60.8
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 1.3e-286 989.9 920 60.8
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 6.2e-286 987.6 872 62.4
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 1.1e-285 986.9 926 59.2
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 8.4e-283 977.2 927 59.2
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 1.1e-282 976.9 915 58.6
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 2.1e-281 972.6 917 58.7
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 4.8e-278 961.4 921 57.9
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.8e-277 959.5 915 58.0
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 3.8e-275 951.8 881 59.6
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.7e-273 945.7 865 59.4
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 1.9e-271 939.5 926 57.1
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 2.5e-271 939.1 936 56.6
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.4e-269 932.6 913 57.9
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 3.4e-268 928.7 913 57.5
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 1.0e-267 927.2 930 57.7
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.2e-267 926.0 937 55.1
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 2.5e-266 922.5 907 56.2
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 3.6e-265 918.7 921 54.9
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 6.1e-265 917.9 912 56.0
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 1.4e-264 916.8 920 55.9
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 1.8e-264 916.4 913 56.2
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 2.3e-264 916.0 919 57.1
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 3.0e-264 915.6 862 57.3
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 3.9e-264 915.2 919 56.9
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 2.0e-263 912.9 858 56.8
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 1.7e-262 909.8 903 56.1
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 1.8e-261 906.4 862 57.1
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 2.4e-261 906.0 918 56.4
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 2.4e-261 906.0 918 56.4
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 5.3e-261 904.8 922 55.5
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 1.2e-260 903.7 907 54.5
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 1.2e-260 903.7 919 55.1
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 2.0e-260 902.9 914 54.3
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 3.8e-259 898.7 891 55.3
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 5.5e-258 894.8 922 54.7
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 1.1e-255 887.1 863 56.4
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 1.5e-252 876.7 912 55.3
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 6.5e-251 871.3 937 54.3
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 1.1e-250 870.5 832 59.1
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 1.8e-248 863.2 753 61.4
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 4.1e-245 852.0 800 58.9
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 5.3e-245 851.7 865 55.0
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 5.3e-245 851.7 550 80.5
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.6e-244 850.1 942 51.8
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 4.7e-241 838.6 903 51.4
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 2.2e-238 829.7 868 53.6
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 5.4e-237 825.1 779 60.1
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 3.5e-236 822.4 905 51.9
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.7e-233 812.0 892 51.7
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 8.0e-225 784.6 902 51.7
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 2.0e-220 770.0 783 56.1
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 5.0e-219 765.4 658 63.5
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 9.2e-213 744.6 804 51.5
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 2.2e-198 696.8 695 56.8
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 2.5e-194 683.3 550 64.5
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 8.1e-177 625.2 615 53.2
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 2.6e-175 620.2 889 43.1
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 6.4e-174 615.5 892 40.9
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 7.4e-170 602.1 903 41.1
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-168 598.2 707 52.5
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 9.0e-168 595.1 887 41.9
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 2.5e-162 577.0 477 63.5
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 2.8e-153 547.0 806 44.9
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 5.1e-147 526.2 857 39.0
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 2.0e-130 471.1 474 58.4
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 7.7e-111 406.0 914 31.8
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 7.3e-109 399.4 350 66.9
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 8.0e-108 396.0 394 58.6
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 6.6e-102 376.3 955 33.0
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.1e-101 375.6 404 55.9
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.1e-96 357.1 348 53.2
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 2.3e-91 341.3 988 29.4
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 2.4e-88 331.3 324 54.9
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 7.1e-88 329.7 454 46.7
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 6.0e-87 326.6 678 34.1
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 2.3e-86 324.7 304 56.6
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.7e-73 282.0 269 59.9
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 5.6e-69 266.9 492 40.4
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.6e-66 258.1 256 54.7
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.9e-64 251.9 181 68.5
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 4.8e-60 237.3 219 59.4
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 1.7e-57 228.8 391 43.2
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 4.5e-50 204.1 165 65.5
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.3e-49 202.6 194 57.2
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 1.2e-47 196.1 132 79.5
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.7e-46 190.3 267 41.6
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.1e-44 185.3 327 41.3
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 2.1e-39 168.7 132 67.4
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 5.7e-37 160.6 96 87.5
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.7e-33 149.1 177 42.9
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 4.8e-28 131.0 129 56.6
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 1.4e-27 129.4 170 54.1
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 3.8e-25 121.3 97 66.0
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 2.5e-24 118.6 106 62.3
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 3.1e-19 101.7 111 55.9
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 7.7e-18 97.1 91 60.4
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 5.0e-17 94.4 135 46.7
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.5e-16 92.8 376 29.0
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 1.8e-14 85.9 60 75.0
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.7e-13 80.9 48 79.2
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 6.3e-12 77.4 70 60.0
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 9.1e-11 73.6 68 64.7
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 2.9e-09 68.6 110 43.6
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-07 63.2 121 35.5


User provided reference genes

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