Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G025800 Glycine max HOM05D006839 ORTHO05D007872 1.9e-74 282.3 135 100.0
Glyma.02G148000 Glycine max HOM05D006839 ORTHO05D007872 5.6e-66 254.2 135 90.4
Phvul.007G171000 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 1.1e-61 240.0 135 84.4
VMungo0720G2173 Vigna mungo HOM05D006839 ORTHO05D007872 4.1e-61 238.0 135 84.4
Phvul.001G150100 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 2.3e-51 205.7 136 69.1
VMungo1383G1584 Vigna mungo HOM05D006839 ORTHO05D007872 1.1e-48 196.8 136 67.6
Glyma.19G155100 Glycine max HOM05D006839 ORTHO05D007872 5.2e-48 194.5 137 66.4
Potri.005G208400 Populus trichocarpa HOM05D006839 ORTHO05D007872 9.8e-47 190.3 135 64.4
Lj1g0018770 Lotus japonicus HOM05D006839 ORTHO05D007872 1.7e-46 189.5 127 69.3
Haze_04725 Corylus avellana HOM05D006839 ORTHO05D007872 2.9e-46 188.7 135 63.7
COL.COLO4_09110 Corchorus olitorius HOM05D006839 ORTHO05D007872 4.9e-46 188.0 128 67.2
Manes.05G075300 Manihot esculenta HOM05D006839 ORTHO05D007872 6.4e-46 187.6 138 64.5
Duzib211G0653 Durio zibethinus HOM05D006839 ORTHO05D007872 1.9e-45 186.0 135 65.9
CSS0014698 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 2.7e-44 182.2 128 64.8
Atru.chr5.1418 Acer truncatum HOM05D006839 ORTHO05D007872 3.5e-44 181.8 135 63.0
Ciclev10023291m.g Citrus clementina HOM05D006839 ORTHO05D007872 3.5e-44 181.8 124 65.3
Gorai.007G136000 Gossypium raimondii HOM05D006839 ORTHO05D007872 3.5e-44 181.8 135 65.9
CSS0016717 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 7.8e-44 180.6 128 64.1
Medtr7g094760 Medicago truncatula HOM05D006839 ORTHO05D007872 1.0e-43 180.3 128 64.1
Hma1.2p1_0257F.1_g103610 Hydrangea macrophylla HOM05D000265 ORTHO05D007872 1.3e-43 179.9 111 71.2
Gohir.D11G127300 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.7e-43 179.5 135 65.2
Gohir.D11G127350 Gossypium hirsutum HOM05D006839 ORTHO05D007872 1.7e-43 179.5 135 65.2
Gohir.A11G122100 Gossypium hirsutum HOM05D006839 ORTHO05D007872 3.0e-43 178.7 135 63.7
TWI59G1109 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 3.0e-43 178.7 136 60.3
vmacro14927 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 3.0e-43 178.7 117 67.5
TAR636G2925 Trochodendron aralioides HOM05D006839 ORTHO05D007872 8.6e-43 177.2 135 60.7
TWI14G1288 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 1.1e-42 176.8 135 61.5
Cpa.g.sc52.24 Carica papaya HOM05D006839 ORTHO05D007872 3.3e-42 175.3 131 62.6
QL12p022082 Quercus lobata HOM05D006839 ORTHO05D007872 5.6e-42 174.5 126 61.9
CiPaw.08G104600 Carya illinoinensis HOM05D006839 ORTHO05D007872 1.2e-41 173.3 134 56.7
MELO3C014411.2 Cucumis melo HOM05D006839 ORTHO05D007872 2.1e-41 172.6 127 60.6
FvH4_2g23730 Fragaria vesca HOM05D006839 ORTHO05D007872 3.6e-41 171.8 127 59.8
Thecc.01G280800 Theobroma cacao HOM05D006839 ORTHO05D007872 4.7e-41 171.4 125 65.6
CsaV3_6G037040 Cucumis sativus L. HOM05D006839 ORTHO05D007872 8.1e-41 170.6 127 59.8
RcHm_v2.0_Chr6g0291211 Rosa chinensis HOM05D006839 ORTHO05D007872 1.8e-40 169.5 130 60.0
FAN24G3533 Fragaria x ananassa HOM05D006839 ORTHO05D007872 2.3e-40 169.1 127 59.1
Prupe.8G242500 Prunus persica HOM05D006839 ORTHO05D007872 3.1e-40 168.7 128 61.7
MD11G1287200 Malus domestica HOM05D006839 ORTHO05D007872 4.0e-40 168.3 135 60.0
Oeu022880.1 Olea europaea HOM05D006839 ORTHO05D007872 6.8e-40 167.5 123 57.7
Cfa006129 Carpinus fangiana HOM05D006839 ORTHO05D007872 1.5e-39 166.4 128 60.2
Migut.D00285 Erythranthe guttata HOM05D006839 ORTHO05D007872 2.0e-39 166.0 129 59.7
Aqoxy2G03292 Aquilegia oxysepala HOM05D006839 ORTHO05D007872 4.4e-39 164.9 131 56.5
Sabra05G0158500 Salix brachista HOM05D006839 ORTHO05D007872 9.9e-39 163.7 126 60.3
Cc01_g19590 Coffea canephora HOM05D006839 ORTHO05D007872 1.7e-38 162.9 137 54.0
ECA248G0593 Erigeron canadensis HOM05D006839 ORTHO05D007872 2.9e-38 162.2 114 62.3
PGR119G0017 Punica granatum HOM05D006839 ORTHO05D007872 3.8e-38 161.8 122 57.4
Glyma.03G152600 Glycine max HOM05D006839 ORTHO05D007872 4.9e-38 161.4 137 59.9
Sed0018644 Sechium edule HOM05D006839 ORTHO05D007872 1.4e-37 159.8 129 58.9
SalBow4G2140 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.4e-37 159.1 124 58.1
Lsat_1_v5_gn_5_190060 Lactuca sativa HOM05D006839 ORTHO05D007872 4.1e-37 158.3 135 53.3
Nitab4.5_0001028g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 5.4e-37 157.9 129 58.1
Nn1g02187 Nelumbo nucifera HOM05D006839 ORTHO05D007872 1.2e-36 156.8 130 56.9
Actinidia24884 Actinidia chinensis HOM05D006839 ORTHO05D007872 1.6e-36 156.4 108 64.8
Solyc09g065040.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 1.6e-36 156.4 129 57.4
Sopen09g026780 Solanum pennellii HOM05D006839 ORTHO05D007872 2.7e-36 155.6 129 57.4
PGSC0003DMG400039700 Solanum tuberosum HOM05D006839 ORTHO05D007872 2.7e-36 155.6 129 57.4
PGSC0003DMG402026866 Solanum tuberosum HOM05D006839 ORTHO05D007872 2.7e-36 155.6 129 57.4
Eucgr.K03376 Eucalyptus grandis HOM05D006839 ORTHO05D007872 6.0e-36 154.5 129 54.3
Nitab4.5_0007089g0020 Nicotiana tabacum HOM05D006839 ORTHO05D007872 6.0e-36 154.5 133 57.1
FAN15G1162 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.3e-35 153.3 120 57.5
FAN27G2541 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.1e-34 150.2 111 58.6
FAN20G2906 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.9e-34 149.4 120 56.7
MBI19_g46647_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 1.9e-34 149.4 111 55.9
MBI19_g14316_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 7.3e-34 147.5 111 55.0
ATR0626G183 Amborella trichopoda HOM05D006839 ORTHO05D007872 1.2e-31 140.2 116 53.4
Zm00001eb305770 Zea mays HOM05D006839 ORTHO05D007872 7.1e-29 131.0 131 48.9
SalBow7G1292 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.7e-28 129.0 135 46.7
Rhsim01G0275200 Rhododendron simsii HOM05D006839 ORTHO05D007872 2.3e-27 125.9 92 63.0
SEGI_06174 Sequoiadendron giganteum HOM05D006839 ORTHO05D007872 9.6e-26 120.6 136 45.6
Eucgr.L02237 Eucalyptus grandis HOM05D006839 ORTHO05D007872 4.8e-25 118.2 135 43.7
Eucgr.L02238 Eucalyptus grandis HOM05D006839 ORTHO05D007872 8.1e-25 117.5 135 45.2
Eucgr.H00898 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.4e-24 115.9 135 45.2
HPP92_001336 Vanilla planifolia HOM05D006839 ORTHO05D007872 2.4e-24 115.9 128 45.3
SalBow6G6528 Salvia bowleyana HOM05D006839 ORTHO05D007872 4.5e-23 111.7 109 45.9
SalBow6G4286 Salvia bowleyana HOM05D006839 ORTHO05D007872 9.9e-23 110.5 121 45.5
Eucgr.J01400 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.8e-22 108.6 123 43.1
CAN.G619.35 Capsicum annuum HOM05D006839 ORTHO05D007872 6.4e-22 107.8 100 50.0
CAN.G619.39 Capsicum annuum HOM05D006839 ORTHO05D007872 3.2e-21 105.5 122 43.4
Eucgr.A00826 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.2e-21 105.5 132 39.4
Solyc04g026140.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 3.2e-21 105.5 112 44.6
PGSC0003DMG400045936 Solanum tuberosum HOM05D006839 ORTHO05D007872 4.2e-21 105.1 119 45.4
PGSC0003DMG400041475 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.2e-20 103.6 120 45.8
CAN.G619.36 Capsicum annuum HOM05D006839 ORTHO05D007872 1.6e-20 103.2 116 44.8
Migut.N02162 Erythranthe guttata HOM05D006839 ORTHO05D007872 3.5e-20 102.1 123 37.4
Migut.N02163 Erythranthe guttata HOM05D006839 ORTHO05D007872 1.0e-19 100.5 123 39.8
Peaxi162Scf00681g00001 Petunia axillaris HOM05D006839 ORTHO05D007872 1.0e-19 100.5 108 44.4
PGSC0003DMG400046937 Solanum tuberosum HOM05D006839 ORTHO05D007872 5.1e-19 98.2 108 44.4
SalBow6G0334 Salvia bowleyana HOM05D006839 ORTHO05D007872 8.7e-19 97.4 113 40.7
Nitab4.5_0000771g0180 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.5e-18 96.7 118 44.1
SalBow6G2151 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.5e-18 96.7 134 38.1
SalBow6G5378 Salvia bowleyana HOM05D006839 ORTHO05D007872 3.3e-18 95.5 120 39.2
PGSC0003DMG400029246 Solanum tuberosum HOM05D006839 ORTHO05D007872 5.6e-18 94.7 75 57.3
SalBow6G6538 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.3e-17 93.6 121 38.8
SMO364G0778 Selaginella moellendorffii HOM05D006839 ORTHO05D007872 1.6e-17 93.2 133 38.3
Eucgr.A00847 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.6e-17 92.0 127 37.0
Nitab4.5_0006691g0070 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.8e-16 89.7 109 41.3
Eucgr.L00883 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.4e-16 89.4 95 46.3
PGR119G1259 Punica granatum HOM05D006839 ORTHO05D007872 9.0e-16 87.4 113 39.8
PGR083G1544 Punica granatum HOM05D006839 ORTHO05D007872 2.0e-15 86.3 109 40.4
Nitab4.5_0000771g0190 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.2e-14 82.8 93 44.1
Actinidia21107 Actinidia chinensis HOM05D000265 ORTHO05D000161 2.9e-14 82.4 55 63.6
Eucgr.H01539 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.9e-14 82.4 129 36.4
TWI73G0617 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 3.8e-14 82.0 140 38.6
Nitab4.5_0009973g0030 Nicotiana tabacum HOM05D006839 ORTHO05D007872 8.4e-14 80.9 82 48.8
Nitab4.5_0009973g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.9e-13 79.7 109 40.4
Peaxi162Scf00681g00002 Petunia axillaris HOM05D006839 ORTHO05D007872 1.9e-13 79.7 121 37.2
Eucgr.A00843 Eucalyptus grandis HOM05D006839 ORTHO05D007872 9.3e-13 77.4 111 36.0
PGR142G4476 Punica granatum HOM05D006839 ORTHO05D007872 6.0e-12 74.7 121 34.7
PGR083G0613 Punica granatum HOM05D006839 ORTHO05D007872 1.8e-11 73.2 130 33.8
PGR084G0009 Punica granatum HOM05D006839 ORTHO05D007872 3.0e-11 72.4 107 34.6
PGR142G2474 Punica granatum HOM05D006839 ORTHO05D007872 3.0e-11 72.4 107 34.6
PGR031G1999 Punica granatum HOM05D006839 ORTHO05D007872 4.8e-09 65.1 101 36.6
AagrBONN_evm.TU.Sc2ySwM_344.1663 Anthoceros agrestis HOM05D006839 ORTHO05D007872 1.1e-08 63.9 115 33.9
AagrBONN_evm.TU.Sc2ySwM_344.366 Anthoceros agrestis HOM05D006839 ORTHO05D007872 1.1e-08 63.9 106 34.9
Gohir.D10G061400 Gossypium hirsutum HOM05D000022 ORTHO05D000306 4.5e-07 58.5 97 29.9
Nitab4.5_0000003g0350 Nicotiana tabacum HOM05D006839 ORTHO05D007872 4.5e-07 58.5 115 31.3
Peaxi162Scf00681g00011 Petunia axillaris HOM05D006839 ORTHO05D007872 4.5e-07 58.5 57 49.1
TPR.G10812 Trifolium pratense HOM05D000022 ORTHO05D000306 7.6e-07 57.8 90 35.6
TPR.G5552 Trifolium pratense HOM05D000022 ORTHO05D000071 7.6e-07 57.8 112 29.5
Gohir.A06G145500 Gossypium hirsutum HOM05D000022 ORTHO05D000071 1.0e-06 57.4 103 33.0
Manes.12G052300 Manihot esculenta HOM05D000022 ORTHO05D000306 1.3e-06 57.0 108 28.7
PGR031G2486 Punica granatum HOM05D023640 ORTHO05D019592 1.3e-06 57.0 72 47.2
Gohir.A10G059850 Gossypium hirsutum HOM05D000022 ORTHO05D000306 3.8e-06 55.5 97 32.0
Gohir.D10G061200 Gossypium hirsutum HOM05D000022 ORTHO05D000306 3.8e-06 55.5 97 32.0
Gorai.011G065500 Gossypium raimondii HOM05D000022 ORTHO05D000306 3.8e-06 55.5 97 32.0
Medtr1g105655 Medicago truncatula HOM05D000022 ORTHO05D000071 3.8e-06 55.5 52 50.0
PGR031G3557 Punica granatum HOM05D023640 ORTHO05D019592 3.8e-06 55.5 122 34.4
Thecc.06G111000 Theobroma cacao HOM05D000022 ORTHO05D000306 3.8e-06 55.5 97 30.9
SEGI_05512 Sequoiadendron giganteum HOM05D000022 ORTHO05D002153 4.9e-06 55.1 54 46.3
COL.COLO4_30654 Corchorus olitorius HOM05D000022 ORTHO05D000306 6.5e-06 54.7 97 29.9


User provided reference genes

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