Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G018900 Glycine max HOM05D006871 ORTHO05D008544 2.6e-89 332.0 168 100.0
Glyma.02G155400 Glycine max HOM05D006871 ORTHO05D008544 4.0e-82 308.1 168 92.3
Phvul.007G143800 Phaseolus vulgaris HOM05D006871 ORTHO05D008544 1.5e-76 289.7 168 88.1
VMungo0720G2524 Vigna mungo HOM05D006871 ORTHO05D008544 4.3e-76 288.1 168 86.3
Lj1g0003126 Lotus japonicus HOM05D006871 ORTHO05D008544 7.9e-70 267.3 174 77.0
Ca_10345_v3 Cicer arietinum L. HOM05D006871 ORTHO05D008544 9.0e-66 253.8 168 73.8
Medtr1g088670 Medicago truncatula HOM05D006871 ORTHO05D008544 3.2e-63 245.4 171 69.6
arahy.Tifrunner.gnm1.ann1.K3SJ5I Arachis hypogaea HOM05D006871 ORTHO05D008544 1.6e-62 243.0 188 67.6
arahy.Tifrunner.gnm1.ann1.KXN2DA Arachis hypogaea HOM05D006871 ORTHO05D008544 4.6e-62 241.5 184 68.5
Psat6g165000 Pisum sativum HOM05D006871 ORTHO05D008544 4.3e-60 235.0 170 67.6
Lalb_Chr18g0047051 Lupinus albus HOM05D006871 ORTHO05D008544 6.3e-59 231.1 190 65.3
CSS0020652 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 2.0e-57 226.1 187 63.1
CSS0035923 Camellia sinensis var. sinensis HOM05D006871 ORTHO05D008544 3.4e-57 225.3 187 63.1
Dinv33046 Davidia involucrata HOM05D006871 ORTHO05D008544 1.3e-56 223.4 192 61.5
vmacro02459 Vaccinium macrocarpon HOM05D006871 ORTHO05D008544 2.5e-55 219.2 189 61.4
Cpa.g.sc9.224 Carica papaya HOM05D000121 ORTHO05D000102 7.2e-55 217.6 199 60.8
Atru.chr5.1162 Acer truncatum HOM05D006871 ORTHO05D008544 9.4e-55 217.2 185 60.5
Cfa005931 Carpinus fangiana HOM05D006871 ORTHO05D008544 9.4e-55 217.2 194 58.2
CiPaw.07G107300 Carya illinoinensis HOM05D006871 ORTHO05D008544 6.1e-54 214.5 188 60.6
Haze_04913 Corylus avellana HOM05D006871 ORTHO05D008544 6.1e-54 214.5 194 57.7
FAN20G2591 Fragaria x ananassa HOM05D006871 ORTHO05D008544 1.8e-53 213.0 179 60.9
SalBow3G3208 Salvia bowleyana HOM05D006871 ORTHO05D008544 1.8e-53 213.0 185 60.5
FAN27G2794 Fragaria x ananassa HOM05D006871 ORTHO05D008544 5.1e-53 211.5 179 60.3
FvH4_2g25580 Fragaria vesca HOM05D006871 ORTHO05D008544 8.8e-53 210.7 179 61.5
Lj2A1192T47 Lonicera japonica HOM05D006871 ORTHO05D008544 1.1e-52 210.3 187 59.4
Actinidia32224 Actinidia chinensis HOM05D006871 ORTHO05D008544 2.0e-52 209.5 189 59.3
Rhsim13G0011300 Rhododendron simsii HOM05D000121 ORTHO05D000102 2.0e-52 209.5 186 59.7
Actinidia24342 Actinidia chinensis HOM05D006871 ORTHO05D008544 3.3e-52 208.8 188 59.0
Oeu032105.1 Olea europaea HOM05D006871 ORTHO05D008544 3.3e-52 208.8 185 58.9
Ciclev10022428m.g Citrus clementina HOM05D006871 ORTHO05D008544 9.7e-52 207.2 185 58.9
PGR119G1195 Punica granatum HOM05D006871 ORTHO05D008544 9.7e-52 207.2 202 56.4
PGR119G1688 Punica granatum HOM05D006871 ORTHO05D008544 9.7e-52 207.2 202 56.4
SGA_v2.0_scaffold1G00373 Striga asiatica HOM05D001198 ORTHO05D008544 9.7e-52 207.2 184 57.6
MSTRG.18162 Avicennia marina HOM05D006871 ORTHO05D008544 1.3e-51 206.8 185 58.9
PGSC0003DMG400011375 Solanum tuberosum HOM05D006871 ORTHO05D008544 1.7e-51 206.5 194 58.2
Lsat_1_v5_gn_8_53460 Lactuca sativa HOM05D006871 ORTHO05D008544 2.2e-51 206.1 187 58.3
Cc09_g05510 Coffea canephora HOM05D006871 ORTHO05D008544 3.7e-51 205.3 185 58.9
MELO3C016009.2 Cucumis melo HOM05D006871 ORTHO05D008544 3.7e-51 205.3 186 55.9
GSVIVG01027991001 Vitis vinifera HOM05D006871 ORTHO05D008544 3.7e-51 205.3 194 56.2
Nitab4.5_0002469g0070 Nicotiana tabacum HOM05D006871 ORTHO05D008544 4.8e-51 204.9 191 58.1
Sc05g0003970 Simmondsia chinensis HOM05D006871 ORTHO05D008544 6.3e-51 204.5 189 58.2
Solyc09g075030.3 Solanum lycopersicum HOM05D006871 ORTHO05D008544 6.3e-51 204.5 195 57.9
Thecc.01G298700 Theobroma cacao HOM05D006871 ORTHO05D008544 8.2e-51 204.1 190 56.3
HanXRQChr06g0163831 Helianthus annuus HOM05D006871 ORTHO05D008544 1.1e-50 203.8 188 59.0
Duzib138G1907 Durio zibethinus HOM05D006871 ORTHO05D008544 1.4e-50 203.4 190 57.4
Hma1.2p1_0491F.1_g164460 Hydrangea macrophylla HOM05D006871 ORTHO05D008544 1.4e-50 203.4 189 58.2
MD11G1313700 Malus domestica HOM05D006871 ORTHO05D008544 1.4e-50 203.4 196 54.6
Eucgr.H01153 Eucalyptus grandis HOM05D006871 ORTHO05D008544 1.8e-50 203.0 204 54.4
Sopen09g029850 Solanum pennellii HOM05D006871 ORTHO05D008544 2.4e-50 202.6 195 57.4
CsaV3_7G029180 Cucumis sativus L. HOM05D006871 ORTHO05D008544 3.1e-50 202.2 186 55.4
BcaC05g24587 Brassica carinata HOM05D006871 ORTHO05D008544 4.1e-50 201.8 191 58.1
C05p01490 Brassica napus HOM05D006871 ORTHO05D008544 4.1e-50 201.8 191 58.1
Nitab4.5_0011307g0010 Nicotiana tabacum HOM05D006871 ORTHO05D008544 4.1e-50 201.8 191 57.1
BolC5t28931H Brassica oleracea HOM05D006871 ORTHO05D008544 5.3e-50 201.4 191 58.1
Potri.014G130400 Populus trichocarpa HOM05D006871 ORTHO05D008544 5.3e-50 201.4 192 56.8
Prupe.8G259900 Prunus persica HOM05D006871 ORTHO05D008544 5.3e-50 201.4 185 57.8
Gohir.A08G101400 Gossypium hirsutum HOM05D006871 ORTHO05D008544 6.9e-50 201.1 190 55.8
BraA10t42428Z Brassica rapa HOM05D006871 ORTHO05D008544 9.1e-50 200.7 191 58.1
Gohir.D08G084900 Gossypium hirsutum HOM05D006871 ORTHO05D008544 9.1e-50 200.7 194 55.2
Manes.05G063100 Manihot esculenta HOM05D006871 ORTHO05D008544 9.1e-50 200.7 188 57.4
A10p01520 Brassica napus HOM05D006871 ORTHO05D008544 1.2e-49 200.3 191 57.6
Duzib133G1442 Durio zibethinus HOM05D006871 ORTHO05D008544 1.2e-49 200.3 190 55.8
RcHm_v2.0_Chr6g0293791 Rosa chinensis HOM05D006871 ORTHO05D008544 1.5e-49 199.9 192 56.2
Sabra14G0097000 Salix brachista HOM05D006871 ORTHO05D008544 1.5e-49 199.9 192 57.3
Carub.0001s0199 Capsella rubella HOM05D006871 ORTHO05D008544 2.0e-49 199.5 189 57.7
TWI14G0013 Tripterygium wilfordii HOM05D006871 ORTHO05D008544 2.6e-49 199.1 186 57.0
EL10Ac7g17459 Beta vulgaris HOM05D006871 ORTHO05D008544 4.5e-49 198.4 194 54.6
Migut.D00207 Erythranthe guttata HOM05D006871 ORTHO05D008544 4.5e-49 198.4 185 56.2
Thhalv10008837m.g Eutrema salsugineum HOM05D006871 ORTHO05D008544 4.5e-49 198.4 191 56.0
CANSAT25G1157 Cannabis sativa HOM05D006871 ORTHO05D008544 5.9e-49 198.0 197 53.8
CANSAT25G3267 Cannabis sativa HOM05D006871 ORTHO05D008544 5.9e-49 198.0 197 53.8
ClCG09G005940 Citrullus lanatus HOM05D006871 ORTHO05D008544 5.9e-49 198.0 190 53.2
TAR633G1007 Trochodendron aralioides HOM05D006871 ORTHO05D008544 7.7e-49 197.6 191 56.0
COL.COLO4_23360 Corchorus olitorius HOM05D006871 ORTHO05D008544 1.0e-48 197.2 184 57.1
BcaB03g15758 Brassica carinata HOM05D006871 ORTHO05D008544 1.7e-48 196.4 192 57.3
Aqoxy5G00741 Aquilegia oxysepala HOM05D006871 ORTHO05D008544 2.2e-48 196.1 188 54.3
Sed0022553 Sechium edule HOM05D006871 ORTHO05D008544 2.2e-48 196.1 190 53.2
Aa31LG1G9720 Aethionema arabicum HOM05D006871 ORTHO05D008544 2.9e-48 195.7 191 55.5
Sp1g01860 Schrenkiella parvula HOM05D006871 ORTHO05D008544 3.8e-48 195.3 191 55.5
Peaxi162Scf00001g00482 Petunia axillaris HOM05D006871 ORTHO05D008544 1.1e-47 193.7 187 56.1
unitig_0.g659 Utricularia gibba HOM05D006871 ORTHO05D008544 1.1e-47 193.7 186 55.4
THA.LOC104801274 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 1.4e-47 193.4 191 54.5
AT1G02870 Arabidopsis thaliana HOM05D006871 ORTHO05D008544 2.5e-47 192.6 191 53.9
CARHR002210 Cardamine hirsuta HOM05D006871 ORTHO05D008544 2.5e-47 192.6 191 55.5
THA.LOC104815930 Tarenaya hassleriana HOM05D006871 ORTHO05D008544 4.2e-47 191.8 191 53.9
AL1G12280 Arabidopsis lyrata HOM05D006871 ORTHO05D008544 7.2e-47 191.0 191 53.9
ECA236G5112 Erigeron canadensis HOM05D006871 ORTHO05D008544 1.2e-46 190.3 187 55.6
PSO210G5360 Papaver somniferum HOM05D006871 ORTHO05D008544 3.6e-46 188.7 193 53.9
PSO832G2873 Papaver somniferum HOM05D006871 ORTHO05D008544 3.6e-46 188.7 193 53.9
FAN24G1547 Fragaria x ananassa HOM05D006871 ORTHO05D008544 4.7e-46 188.3 170 57.6
Hund18131 Selenicereus undatus HOM05D006871 ORTHO05D008544 4.7e-46 188.3 232 48.3
QL12p027406 Quercus lobata HOM05D006871 ORTHO05D008544 6.1e-46 188.0 182 56.0
CiPaw.08G096300 Carya illinoinensis HOM05D006871 ORTHO05D008544 7.9e-46 187.6 181 53.0
CAN.G339.16 Capsicum annuum HOM05D006871 ORTHO05D008544 6.7e-45 184.5 186 55.4
CDE05G0468 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 8.8e-45 184.1 182 53.3
AUR62033118 Chenopodium quinoa HOM05D006871 ORTHO05D008544 1.1e-44 183.7 195 51.8
Gorai.004G089300 Gossypium raimondii HOM05D006871 ORTHO05D008544 1.1e-44 183.7 227 47.1
C08p00260 Brassica napus HOM05D006871 ORTHO05D008544 2.6e-44 182.6 193 54.9
BolC8t46828H Brassica oleracea HOM05D006871 ORTHO05D008544 5.7e-44 181.4 193 54.4
ATR0796G034 Amborella trichopoda HOM05D006871 ORTHO05D008544 9.7e-44 180.6 199 51.8
Os05g0367100 Oryza sativa ssp. japonica HOM05D006871 ORTHO05D008544 2.6e-41 172.6 185 51.4
Zm00001eb285510 Zea mays HOM05D006871 ORTHO05D008544 6.5e-40 167.9 180 50.6
HPP92_013720 Vanilla planifolia HOM05D006871 ORTHO05D008544 3.2e-39 165.6 184 51.1
Nn3g21461 Nelumbo nucifera HOM05D006871 ORTHO05D008544 1.6e-38 163.3 152 59.2
AUR62008650 Chenopodium quinoa HOM05D006871 ORTHO05D008544 4.1e-34 148.7 278 36.0
AagrBONN_evm.TU.Sc2ySwM_117.3922 Anthoceros agrestis HOM05D006871 ORTHO05D008544 1.5e-31 140.2 174 44.3
BcaC07g36990 Brassica carinata HOM05D006871 ORTHO05D008544 3.0e-29 132.5 151 51.0
Pp3c25_320 Physcomitrium patens HOM05D006871 ORTHO05D008544 8.8e-29 131.0 174 46.0
Psat1g156280 Pisum sativum HOM05D006871 ORTHO05D008544 1.7e-24 116.7 100 61.0
Mapoly0043s0113 Marchantia polymorpha HOM05D006871 ORTHO05D008544 4.0e-21 105.5 172 40.1
MBI19_g13201_MAGBIO Magnolia biondii HOM05D006871 ORTHO05D008544 7.7e-17 91.3 115 51.3
DCAR_002824 Daucus carota HOM05D006871 ORTHO05D008544 1.3e-16 90.5 111 48.6
CDE11G0846 Ceratophyllum demersum HOM05D006871 ORTHO05D008544 8.0e-14 81.3 110 44.5
Cre17.g726650 Chlamydomonas reinhardtii HOM05D006871 ORTHO05D008544 8.9e-13 77.8 172 35.5
MD05G1198200 Malus domestica HOM05D006871 ORTHO05D008544 1.5e-12 77.0 53 58.5
Nitab4.5_0000119g0320 Nicotiana tabacum HOM05D006871 ORTHO05D008544 2.2e-11 73.2 47 70.2
CBR_g19096 Chara braunii HOM05D006871 ORTHO05D008544 2.9e-11 72.8 78 46.2
MCO15G582 Micromonas commoda HOM05D006871 ORTHO05D008544 2.0e-09 66.6 196 28.1


User provided reference genes

Program Settings