Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G018500 Glycine max HOM05D002674 ORTHO05D008041 2.6e-50 201.8 107 100.0
Phvul.007G146200 Phaseolus vulgaris HOM05D002674 ORTHO05D008041 3.2e-40 168.3 107 85.0
VMungo0720G1979 Vigna mungo HOM05D002674 ORTHO05D008041 1.2e-39 166.4 107 83.2
Lj5g0008305 Lotus japonicus HOM05D002674 ORTHO05D008041 1.0e-38 163.3 107 80.4
Lalb_Chr21g0306851 Lupinus albus HOM05D002674 ORTHO05D008041 3.0e-38 161.8 105 79.0
arahy.Tifrunner.gnm1.ann1.9NAT9F Arachis hypogaea HOM05D002674 ORTHO05D008041 2.5e-37 158.7 105 76.2
arahy.Tifrunner.gnm1.ann1.UV7MYU Arachis hypogaea HOM05D002674 ORTHO05D008041 2.5e-37 158.7 105 76.2
Psat6g166360 Pisum sativum HOM05D002674 ORTHO05D008041 4.3e-37 157.9 107 77.6
Ca_10338_v3 Cicer arietinum L. HOM05D002674 ORTHO05D008041 7.3e-37 157.1 107 79.4
CANSAT25G0502 Cannabis sativa HOM05D002674 ORTHO05D008041 1.2e-34 149.8 105 74.3
TPR.G34008 Trifolium pratense HOM05D002674 ORTHO05D008041 1.2e-34 149.8 107 73.8
Medtr1g088550 Medicago truncatula HOM05D002674 ORTHO05D008041 1.3e-33 146.4 107 72.9
Sabra02G0154500 Salix brachista HOM05D002674 ORTHO05D008041 2.9e-33 145.2 104 75.0
Gohir.A08G076000 Gossypium hirsutum HOM05D002674 ORTHO05D008041 4.9e-33 144.4 106 72.6
Thecc.01G300000 Theobroma cacao HOM05D002674 ORTHO05D008041 4.9e-33 144.4 107 73.8
Gohir.D08G085400 Gossypium hirsutum HOM05D002674 ORTHO05D008041 8.4e-33 143.7 106 72.6
Potri.014G129800 Populus trichocarpa HOM05D002674 ORTHO05D008041 8.4e-33 143.7 104 74.0
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 1.9e-32 142.5 107 72.9
COL.COLO4_23349 Corchorus olitorius HOM05D002674 ORTHO05D008041 5.4e-32 141.0 107 72.0
Actinidia32214 Actinidia chinensis HOM05D002674 ORTHO05D008041 7.1e-32 140.6 104 71.2
Aqoxy5G00753 Aquilegia oxysepala HOM05D002674 ORTHO05D008041 1.2e-31 139.8 101 72.3
Glyma.02G018200 Glycine max HOM05D002674 ORTHO05D008041 1.2e-31 139.8 83 88.0
ClCG10G010910 Citrullus lanatus HOM05D002674 ORTHO05D008041 2.1e-31 139.0 105 68.6
Dinv19696 Davidia involucrata HOM05D002674 ORTHO05D008041 2.1e-31 139.0 105 70.5
CSS0018179 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D008041 2.7e-31 138.7 106 67.9
TAR636G2182 Trochodendron aralioides HOM05D002674 ORTHO05D008041 2.7e-31 138.7 106 69.8
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 3.5e-31 138.3 106 68.9
Sed0019690 Sechium edule HOM05D002674 ORTHO05D008041 1.7e-30 136.0 105 67.6
SalBow3G0298 Salvia bowleyana HOM05D002674 ORTHO05D008041 2.3e-30 135.6 105 66.7
TWI14G1447 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 3.9e-30 134.8 107 68.2
Nn3g21482 Nelumbo nucifera HOM05D002674 ORTHO05D008041 5.1e-30 134.4 109 67.9
AUR62033146 Chenopodium quinoa HOM05D002674 ORTHO05D008041 6.6e-30 134.0 107 66.4
MELO3C017957.2 Cucumis melo HOM05D002674 ORTHO05D008041 8.7e-30 133.7 103 65.0
CiPaw.07G108500 Carya illinoinensis HOM05D002674 ORTHO05D008041 1.1e-29 133.3 103 67.0
MD11G1310400 Malus domestica HOM05D002674 ORTHO05D008041 1.1e-29 133.3 107 66.4
AUR62008625 Chenopodium quinoa HOM05D002674 ORTHO05D008041 1.9e-29 132.5 107 65.4
Oeu048338.1 Olea europaea HOM05D002674 ORTHO05D008041 1.9e-29 132.5 101 67.3
Atru.chr5.1150 Acer truncatum HOM05D002674 ORTHO05D008041 2.5e-29 132.1 105 64.8
Atru.chr7.1564 Acer truncatum HOM05D002674 ORTHO05D008041 2.5e-29 132.1 107 63.6
GSVIVG01028011001 Vitis vinifera HOM05D002674 ORTHO05D008041 2.5e-29 132.1 102 65.7
EL10Ac7g17468 Beta vulgaris HOM05D002674 ORTHO05D008041 3.3e-29 131.7 107 65.4
Haze_04934 Corylus avellana HOM05D002674 ORTHO05D008041 4.3e-29 131.3 103 67.0
Cpa.g.sc9.264 Carica papaya HOM05D002674 ORTHO05D008041 5.6e-29 131.0 107 64.5
CsaV3_4G000790 Cucumis sativus L. HOM05D002674 ORTHO05D008041 5.6e-29 131.0 103 63.1
FvH4_2g25692 Fragaria vesca HOM05D002674 ORTHO05D008041 7.3e-29 130.6 105 66.7
QL12p028510 Quercus lobata HOM05D002674 ORTHO05D008041 9.6e-29 130.2 101 67.3
Solyc09g075100.3 Solanum lycopersicum HOM05D002674 ORTHO05D008041 9.6e-29 130.2 103 66.0
Sopen09g029920 Solanum pennellii HOM05D002674 ORTHO05D008041 9.6e-29 130.2 103 66.0
Ciclev10022953m.g Citrus clementina HOM05D002674 ORTHO05D008041 1.3e-28 129.8 103 64.1
MSTRG.21632 Avicennia marina HOM05D002674 ORTHO05D008041 1.6e-28 129.4 103 65.0
Hund18156 Selenicereus undatus HOM05D002674 ORTHO05D008041 1.6e-28 129.4 105 65.7
PGSC0003DMG400011376 Solanum tuberosum HOM05D002674 ORTHO05D008041 1.6e-28 129.4 103 66.0
Peaxi162Scf00001g00445 Petunia axillaris HOM05D002674 ORTHO05D008041 2.1e-28 129.0 103 65.0
CAN.G472.1 Capsicum annuum HOM05D002674 ORTHO05D008041 2.8e-28 128.6 103 65.0
ECA247G1692 Erigeron canadensis HOM05D002674 ORTHO05D008041 2.8e-28 128.6 104 66.3
PGR119G0614 Punica granatum HOM05D002674 ORTHO05D008041 2.8e-28 128.6 103 66.0
RcHm_v2.0_Chr6g0293971 Rosa chinensis HOM05D002674 ORTHO05D008041 2.8e-28 128.6 105 65.7
SGA_v2.0_scaffold2G01395 Striga asiatica HOM05D002674 ORTHO05D008041 2.8e-28 128.6 103 65.0
Cfa005915 Carpinus fangiana HOM05D002674 ORTHO05D008041 3.6e-28 128.3 103 65.0
Eucgr.H01115 Eucalyptus grandis HOM05D002674 ORTHO05D008041 3.6e-28 128.3 107 61.7
MBI19_g25355_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D008041 3.6e-28 128.3 100 67.0
Rhsim13G0010400 Rhododendron simsii HOM05D002674 ORTHO05D008041 4.8e-28 127.9 121 58.7
TWI23G1311 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 4.8e-28 127.9 107 65.4
Prupe.8G261100 Prunus persica HOM05D002674 ORTHO05D008041 6.2e-28 127.5 105 65.7
CDE12G0521 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 8.1e-28 127.1 102 65.7
Cc01_g20820 Coffea canephora HOM05D002674 ORTHO05D008041 8.1e-28 127.1 106 64.2
FvH4_3g17380 Fragaria vesca HOM05D002674 ORTHO05D008041 8.1e-28 127.1 100 67.0
FAN11G2206 Fragaria x ananassa HOM05D002674 ORTHO05D008041 8.1e-28 127.1 100 67.0
FAN21G2416 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.1e-27 126.7 100 67.0
HanXRQChr15g0465661 Helianthus annuus HOM05D002674 ORTHO05D008041 1.8e-27 125.9 103 66.0
Nitab4.5_0008207g0030 Nicotiana tabacum HOM05D002674 ORTHO05D008041 1.8e-27 125.9 103 64.1
FAN16G1943 Fragaria x ananassa HOM05D002674 ORTHO05D008041 2.4e-27 125.6 100 66.0
Nitab4.5_0001879g0010 Nicotiana tabacum HOM05D002674 ORTHO05D008041 2.4e-27 125.6 101 64.4
Lalb_Chr02g0143261 Lupinus albus HOM05D000266 ORTHO05D008041 3.1e-27 125.2 85 75.3
unitig_61.g26303 Utricularia gibba HOM05D002674 ORTHO05D008041 3.1e-27 125.2 102 61.8
FAN25G1445 Fragaria x ananassa HOM05D002674 ORTHO05D008041 6.9e-27 124.0 100 66.0
AL5G45590 Arabidopsis lyrata HOM05D002674 ORTHO05D008041 1.2e-26 123.2 106 63.2
Migut.D00216 Erythranthe guttata HOM05D002674 ORTHO05D008041 1.2e-26 123.2 103 62.1
MD03G1287900 Malus domestica HOM05D002674 ORTHO05D008041 1.2e-26 123.2 107 63.6
Sp5g00710 Schrenkiella parvula HOM05D002674 ORTHO05D008041 3.4e-26 121.7 106 60.4
Carub.0005s2947 Capsella rubella HOM05D002674 ORTHO05D008041 4.5e-26 121.3 104 62.5
ATR0796G030 Amborella trichopoda HOM05D002674 ORTHO05D008041 5.8e-26 120.9 103 59.2
BcaC02g10314 Brassica carinata HOM05D002674 ORTHO05D008041 5.8e-26 120.9 102 61.8
A04p00510 Brassica napus HOM05D002674 ORTHO05D008041 5.8e-26 120.9 102 61.8
BolC4t24576H Brassica oleracea HOM05D002674 ORTHO05D008041 5.8e-26 120.9 102 61.8
BraA04t15771Z Brassica rapa HOM05D002674 ORTHO05D008041 5.8e-26 120.9 102 61.8
Aa31LG10G16570 Aethionema arabicum HOM05D002674 ORTHO05D008041 9.9e-26 120.2 106 59.4
AT3G62810 Arabidopsis thaliana HOM05D002674 ORTHO05D008041 1.3e-25 119.8 106 60.4
Manes.01G218700 Manihot esculenta HOM05D002674 ORTHO05D008041 1.7e-25 119.4 103 62.1
PGR044G1069 Punica granatum HOM05D002674 ORTHO05D008041 1.7e-25 119.4 101 64.4
Thhalv10006327m.g Eutrema salsugineum HOM05D002674 ORTHO05D008041 4.9e-25 117.9 106 58.5
BcaC07g42733 Brassica carinata HOM05D002674 ORTHO05D008041 1.1e-24 116.7 103 61.2
BcaB02g08097 Brassica carinata HOM05D002674 ORTHO05D008041 1.4e-24 116.3 106 58.5
vmacro02452 Vaccinium macrocarpon HOM05D002674 ORTHO05D008041 1.4e-24 116.3 159 47.8
PSO832G1306 Papaver somniferum HOM05D002674 ORTHO05D008041 5.4e-24 114.4 103 57.3
C04p30420 Brassica napus HOM05D002674 ORTHO05D008041 7.1e-24 114.0 102 58.8
CARHR173080 Cardamine hirsuta HOM05D002674 ORTHO05D008041 1.2e-23 113.2 106 59.4
PSO210G6076 Papaver somniferum HOM05D002674 ORTHO05D008041 2.1e-23 112.5 103 55.3
Sabra14G0096400 Salix brachista HOM05D002674 ORTHO05D008041 7.9e-23 110.5 99 59.6
Os05g0363600 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D008041 1.0e-22 110.2 99 58.6
BraA09t40877Z Brassica rapa HOM05D002674 ORTHO05D008041 1.3e-22 109.8 103 60.2
SEGI_38702 Sequoiadendron giganteum HOM05D002674 ORTHO05D008041 1.3e-22 109.8 105 58.1
A09p54660 Brassica napus HOM05D002674 ORTHO05D008041 2.5e-21 105.5 103 58.3
Duzib138G1033 Durio zibethinus HOM05D002674 ORTHO05D008041 5.6e-21 104.4 83 67.5
Gorai.004G089900 Gossypium raimondii HOM05D002674 ORTHO05D008041 9.6e-21 103.6 79 69.6
SalBow3G1515 Salvia bowleyana HOM05D002674 ORTHO05D008041 1.3e-20 103.2 85 62.4
Zm00001eb346590 Zea mays HOM05D002674 ORTHO05D008041 1.6e-20 102.8 99 54.5
Haze_04957 Corylus avellana HOM05D002674 ORTHO05D008041 2.4e-19 99.0 79 65.8
SalBow5G2922 Salvia bowleyana HOM05D002674 ORTHO05D008041 3.1e-19 98.6 79 63.3
Oeu010670.1 Olea europaea HOM05D002674 ORTHO05D008041 4.0e-19 98.2 101 54.5
HPP92_013721 Vanilla planifolia HOM05D002674 ORTHO05D008041 5.3e-19 97.8 180 37.2
CDE01G0164 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 2.6e-18 95.5 77 64.9
Lsat_1_v5_gn_9_5640 Lactuca sativa HOM05D002674 ORTHO05D008643 3.4e-18 95.1 75 66.7
Sc24g0003780 Simmondsia chinensis HOM05D002674 ORTHO05D008041 4.5e-18 94.7 79 62.0
Hma1.2p1_0491F.1_g164520 Hydrangea macrophylla HOM05D002674 ORTHO05D008041 1.4e-16 89.7 75 58.7
DCAR_002831 Daucus carota HOM05D000067 ORTHO05D001807 5.5e-16 87.8 79 62.0
Ah.15g093210 Amaranthus hybridus HOM05D002674 ORTHO05D008041 1.6e-15 86.3 81 58.0
C08p37560 Brassica napus HOM05D002674 ORTHO05D008041 7.4e-13 77.4 75 58.7
Mapoly0061s0038 Marchantia polymorpha HOM05D002674 ORTHO05D008041 7.4e-13 77.4 92 46.7
AagrBONN_evm.TU.Sc2ySwM_362.373 Anthoceros agrestis HOM05D002674 ORTHO05D008041 2.8e-12 75.5 98 44.9
RcHm_v2.0_Chr2g0146991 Rosa chinensis HOM05D002674 ORTHO05D008041 8.4e-09 63.9 53 66.0
BcaC07g40760 Brassica carinata HOM05D002674 ORTHO05D008041 7.9e-07 57.4 53 54.7
BolC8t51336H Brassica oleracea HOM05D002674 ORTHO05D008041 7.9e-07 57.4 53 54.7
PSO832G3862 Papaver somniferum HOM05D001297 ORTHO05D001135 1.3e-06 56.6 79 41.8


User provided reference genes

Program Settings