Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 3.1e-306 1054.3 529 100.0
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 4.0e-277 957.6 529 90.7
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 4.9e-275 950.7 529 90.0
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 1.0e-256 889.8 530 84.9
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 3.9e-256 887.9 530 83.8
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 4.3e-255 884.4 530 83.4
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 9.6e-255 883.2 531 84.7
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 1.2e-254 882.9 526 85.2
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 7.3e-247 857.1 526 83.7
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 1.9e-231 805.8 533 77.1
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 7.4e-231 803.9 532 77.8
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 6.2e-230 800.8 529 76.9
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 2.6e-228 795.4 531 75.3
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 4.5e-228 794.7 527 76.7
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.1e-226 790.0 531 75.9
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 3.2e-226 788.5 525 76.2
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 9.3e-226 786.9 531 73.8
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 1.8e-224 782.7 531 74.4
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 8.7e-224 780.4 525 74.3
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 3.3e-223 778.5 527 74.4
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 4.8e-222 774.6 526 74.3
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 1.8e-221 772.7 527 74.4
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 1.8e-221 772.7 524 75.0
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 2.4e-221 772.3 526 74.0
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 4.1e-221 771.5 528 74.2
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 5.3e-221 771.2 528 73.9
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 6.9e-221 770.8 532 74.1
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 9.0e-221 770.4 530 74.0
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.2e-220 770.0 528 75.0
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 3.4e-220 768.5 535 73.3
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 5.9e-220 767.7 587 68.7
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.9e-220 767.7 529 74.3
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 7.6e-220 767.3 530 73.8
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 1.0e-219 766.9 528 73.9
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 2.2e-219 765.8 532 74.6
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 2.9e-219 765.4 528 73.7
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.1e-218 763.5 527 72.9
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 1.4e-218 763.1 532 74.6
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.4e-218 763.1 525 71.4
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 5.5e-218 761.1 532 73.1
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.5e-218 761.1 525 72.6
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 7.2e-218 760.8 523 74.4
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 2.1e-217 759.2 528 72.9
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 4.6e-217 758.1 530 72.5
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.3e-216 756.5 525 71.0
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 1.8e-216 756.1 527 73.1
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.0e-216 755.4 526 73.2
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 4.3e-215 751.5 534 72.5
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 5.7e-215 751.1 529 72.6
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 9.7e-215 750.4 526 73.0
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 2.8e-214 748.8 530 72.5
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.7e-214 748.4 531 72.1
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 4.8e-214 748.0 551 71.5
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 4.8e-214 748.0 525 72.0
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 1.1e-213 746.9 529 73.2
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 1.4e-213 746.5 529 73.7
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.8e-213 746.1 545 70.1
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 5.3e-213 744.6 531 72.7
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 1.5e-212 743.0 528 70.1
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 3.4e-212 741.9 531 72.1
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 7.7e-212 740.7 527 71.5
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 1.7e-211 739.6 532 71.6
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 6.5e-211 737.6 562 69.4
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 3.2e-210 735.3 532 71.2
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 4.2e-210 734.9 530 71.7
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 5.5e-210 734.6 529 71.3
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 5.5e-210 734.6 525 71.2
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 1.2e-209 733.4 546 69.4
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 4.6e-209 731.5 530 71.5
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 7.9e-209 730.7 530 71.3
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 7.9e-209 730.7 530 71.3
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 3.0e-208 728.8 531 69.9
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.1e-207 726.9 533 70.2
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 1.1e-207 726.9 533 69.0
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.6e-207 725.7 529 69.9
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 2.6e-207 725.7 526 70.7
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.3e-207 725.3 522 70.7
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.7e-206 723.0 520 70.6
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 1.1e-205 720.3 490 75.7
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 2.4e-205 719.2 526 70.3
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 3.4e-204 715.3 553 67.5
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.0e-203 713.8 523 69.4
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 1.7e-203 713.0 507 71.0
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.0e-200 703.7 524 68.5
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.4e-200 703.4 523 68.5
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.3e-200 702.6 489 73.8
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.5e-199 699.9 517 68.5
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 5.7e-199 698.0 525 68.2
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 1.3e-198 696.8 525 68.0
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 8.2e-198 694.1 492 71.3
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.1e-197 692.2 476 73.9
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 1.2e-193 680.2 408 84.6
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 8.2e-190 667.5 530 66.0
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.5e-186 656.8 488 70.7
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 2.7e-185 652.5 535 64.5
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 1.7e-179 633.3 573 63.4
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 2.1e-177 626.3 507 65.9
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 4.0e-168 595.5 411 74.0
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 7.8e-164 581.3 406 72.7
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.7e-124 449.9 517 51.5
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 1.3e-123 447.6 534 50.0
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 2.0e-119 433.7 353 66.6
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.9e-117 427.2 547 44.1
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 6.2e-113 412.1 545 43.5
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 4.5e-111 406.0 527 43.8
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.2e-110 403.7 261 77.0
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 2.2e-110 403.7 553 43.4
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 4.2e-109 399.4 287 70.7
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 2.5e-106 390.2 292 68.5
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 6.3e-105 385.6 261 74.3
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 9.4e-101 371.7 549 38.8
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.8e-99 367.5 316 59.8
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 1.5e-82 311.2 419 42.5
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.0e-78 298.5 176 80.7
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 4.8e-73 279.6 627 31.6
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.4e-66 256.5 315 49.8
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 5.7e-58 229.6 222 56.8
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 2.0e-55 221.1 152 71.7
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.9e-54 217.2 268 49.6
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.9e-54 217.2 162 70.4
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.4e-48 197.6 99 91.9
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 5.0e-46 189.9 715 26.4
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 5.0e-46 189.9 174 56.9
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 7.0e-40 169.5 120 70.0
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 7.0e-40 169.5 111 76.6
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.5e-29 134.4 122 57.4
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.6e-28 130.6 97 63.9
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 9.9e-26 122.5 77 80.5
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.7e-25 121.7 794 22.9
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 8.7e-22 109.4 88 60.2
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 8.1e-20 102.8 108 52.8
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 5.4e-16 90.1 51 88.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 1.3e-09 68.9 111 36.9
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 6.4e-09 66.6 52 71.2
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 4.6e-07 60.5 40 77.5
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 7.9e-07 59.7 113 37.2


User provided reference genes

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