Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G010250 Glycine max HOM05D003039 ORTHO05D019456 2.4e-95 352.8 280 100.0
VMungo1383G3318 Vigna mungo HOM05D000855 ORTHO05D019456 1.7e-37 160.6 100 76.0
Manes.05G012004 Manihot esculenta HOM05D003039 ORTHO05D009478 2.3e-21 107.1 232 49.6
CSS0027768 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D009478 8.9e-18 95.1 232 46.6
Glyma.02G009700 Glycine max HOM05D003039 ORTHO05D009478 2.2e-16 90.5 56 83.9
Lj5g0022385 Lotus japonicus HOM05D003039 ORTHO05D009478 4.3e-12 76.3 42 88.1
Lalb_Chr02g0146981 Lupinus albus HOM05D003039 ORTHO05D009478 1.6e-11 74.3 41 87.8
Phvul.011G069000 Phaseolus vulgaris HOM05D003039 ORTHO05D009478 2.8e-11 73.6 41 87.8
Medtr1g086500 Medicago truncatula HOM05D003039 ORTHO05D009478 1.1e-10 71.6 41 82.9
Ca_10260_v3 Cicer arietinum L. HOM05D003039 ORTHO05D009478 2.4e-10 70.5 42 81.0
VMungo1127G0634 Vigna mungo HOM05D003039 ORTHO05D009478 2.4e-10 70.5 56 66.1
Psat6g159720 Pisum sativum HOM05D003039 ORTHO05D009478 6.9e-10 68.9 42 76.2
TPR.G3049 Trifolium pratense HOM05D003039 ORTHO05D009478 9.0e-10 68.6 41 73.2
AUR62028025 Chenopodium quinoa HOM05D003039 ORTHO05D009478 1.5e-09 67.8 41 78.0
AUR62020699 Chenopodium quinoa HOM05D003039 ORTHO05D009478 2.0e-09 67.4 41 78.0
QL02p045829 Quercus lobata HOM05D003039 ORTHO05D019456 2.6e-09 67.0 92 41.3
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 4.4e-09 66.2 112 32.1
TAR636G0541 Trochodendron aralioides HOM05D003039 ORTHO05D009478 5.8e-09 65.9 41 78.0
VMungo0647G0206 Vigna mungo HOM05D003039 ORTHO05D009478 5.8e-09 65.9 56 62.5
Manes.10G117700 Manihot esculenta HOM05D003039 ORTHO05D009478 2.9e-08 63.5 41 73.2
TAR376G0069 Trochodendron aralioides HOM05D000891 ORTHO05D000761 2.9e-08 63.5 155 29.7
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 2.9e-08 63.5 112 31.2
Sc05g0000230 Simmondsia chinensis HOM05D003039 ORTHO05D009478 3.8e-08 63.2 41 75.6
MD08G1216300 Malus domestica HOM05D003039 ORTHO05D009478 6.4e-08 62.4 35 82.9
Aqoxy7G03329 Aquilegia oxysepala HOM05D003039 ORTHO05D009478 8.4e-08 62.0 42 71.4
EL10Ac8g19260 Beta vulgaris HOM05D003039 ORTHO05D009478 8.4e-08 62.0 42 69.0
Oeu051493.1 Olea europaea HOM05D003039 ORTHO05D009478 8.4e-08 62.0 42 71.4
MSTRG.18804 Avicennia marina HOM05D003039 ORTHO05D009478 1.1e-07 61.6 41 68.3
Cfa004857 Carpinus fangiana HOM05D003039 ORTHO05D009478 1.4e-07 61.2 41 70.7
Prupe.1G549200 Prunus persica HOM05D003039 ORTHO05D009478 1.4e-07 61.2 35 80.0
CiPaw.07G121100 Carya illinoinensis HOM05D003039 ORTHO05D009478 1.9e-07 60.8 41 73.2
FvH4_5g32610 Fragaria vesca HOM05D003039 ORTHO05D009478 1.9e-07 60.8 35 80.0
FAN18G3877 Fragaria x ananassa HOM05D003039 ORTHO05D009478 1.9e-07 60.8 35 80.0
RcHm_v2.0_Chr7g0230241 Rosa chinensis HOM05D003039 ORTHO05D009478 1.9e-07 60.8 35 80.0
Lj2P866T8 Lonicera japonica HOM05D003039 ORTHO05D019456 3.2e-07 60.1 41 68.3
SGA_v2.0_scaffold7G04017 Striga asiatica HOM05D003039 ORTHO05D009478 3.2e-07 60.1 35 77.1
Haze_05093 Corylus avellana HOM05D003039 ORTHO05D009478 4.2e-07 59.7 41 70.7
Eucgr.G01126 Eucalyptus grandis HOM05D003039 ORTHO05D009478 4.2e-07 59.7 36 80.6
Nn2g12694 Nelumbo nucifera HOM05D003039 ORTHO05D009478 4.2e-07 59.7 35 80.0
AUR62003179 Chenopodium quinoa HOM05D001563 ORTHO05D001956 5.4e-07 59.3 93 32.3
Eucgr.G01125 Eucalyptus grandis HOM05D003039 ORTHO05D009478 5.4e-07 59.3 36 80.6
Aqoxy3G04283 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 7.1e-07 58.9 97 30.9
FAN08G2236 Fragaria x ananassa HOM05D003039 ORTHO05D009478 7.1e-07 58.9 35 80.0
QL12p038622 Quercus lobata HOM05D003039 ORTHO05D009478 7.1e-07 58.9 35 80.0
Ah.10g033630 Amaranthus hybridus HOM05D003039 ORTHO05D009478 9.3e-07 58.5 46 67.4
Dinv36297 Davidia involucrata HOM05D003039 ORTHO05D009478 9.3e-07 58.5 41 68.3
Duzib138G0793 Durio zibethinus HOM05D003039 ORTHO05D009478 9.3e-07 58.5 35 77.1
MBI13_g05940_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 9.3e-07 58.5 118 29.7
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 9.3e-07 58.5 96 34.4
Solyc11g071670.2 Solanum lycopersicum HOM05D003039 ORTHO05D009478 9.3e-07 58.5 41 70.7
Sopen11g029340 Solanum pennellii HOM05D003039 ORTHO05D009478 9.3e-07 58.5 41 70.7
Cc01_g08170 Coffea canephora HOM05D003039 ORTHO05D009478 1.2e-06 58.2 35 77.1
Dinv26815 Davidia involucrata HOM05D000891 ORTHO05D000761 1.2e-06 58.2 96 32.3
Migut.D02462 Erythranthe guttata HOM05D003039 ORTHO05D009478 1.2e-06 58.2 35 80.0
Potri.007G079400 Populus trichocarpa HOM05D003039 ORTHO05D009478 1.2e-06 58.2 35 74.3
Rhsim01G0292600 Rhododendron simsii HOM05D003039 ORTHO05D009478 1.2e-06 58.2 41 68.3
Sc07g0000240 Simmondsia chinensis HOM05D000891 ORTHO05D000761 1.2e-06 58.2 99 34.3
DCAR_017780 Daucus carota HOM05D003039 ORTHO05D009478 1.6e-06 57.8 41 68.3
Nn5g29238 Nelumbo nucifera HOM05D007157 ORTHO05D009045 1.6e-06 57.8 105 33.3
Lj2P848T5 Lonicera japonica HOM05D003039 ORTHO05D009478 2.1e-06 57.4 33 78.8
Lj2P868T14 Lonicera japonica HOM05D003039 ORTHO05D009478 2.1e-06 57.4 33 78.8
Sabra07G0066600 Salix brachista HOM05D003039 ORTHO05D009478 2.1e-06 57.4 35 74.3
Actinidia25867 Actinidia chinensis HOM05D003039 ORTHO05D009478 2.7e-06 57.0 41 70.7
Gohir.A11G107600 Gossypium hirsutum HOM05D003039 ORTHO05D009478 2.7e-06 57.0 41 61.0
Gohir.D11G112400 Gossypium hirsutum HOM05D003039 ORTHO05D009478 2.7e-06 57.0 41 61.0
Gorai.007G120700 Gossypium raimondii HOM05D003039 ORTHO05D009478 2.7e-06 57.0 41 61.0
CANSAT80G0566 Cannabis sativa HOM05D003039 ORTHO05D009478 3.5e-06 56.6 35 77.1
MELO3C012922.2 Cucumis melo HOM05D003039 ORTHO05D009478 3.5e-06 56.6 38 71.1
MELO3C017551.2 Cucumis melo HOM05D000891 ORTHO05D000761 3.5e-06 56.6 104 31.7
Hma1.2p1_0143F.1_g064525 Hydrangea macrophylla HOM05D003039 ORTHO05D009478 3.5e-06 56.6 41 68.3
Peaxi162Scf00217g00003 Petunia axillaris HOM05D003039 ORTHO05D009478 3.5e-06 56.6 41 68.3
Solyc03g120460.4 Solanum lycopersicum HOM05D000001 ORTHO05D009971 3.5e-06 56.6 119 33.6
Thecc.01G320000 Theobroma cacao HOM05D003039 ORTHO05D009478 3.5e-06 56.6 39 66.7
Atru.chr5.926 Acer truncatum HOM05D003039 ORTHO05D009478 4.6e-06 56.2 40 70.0
Cpa.g.sc932.1 Carica papaya HOM05D003039 ORTHO05D009478 4.6e-06 56.2 35 77.1
Aqoxy3G04284 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 6.0e-06 55.8 98 27.6
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 6.0e-06 55.8 100 29.0
ClCG10G011660 Citrullus lanatus HOM05D003039 ORTHO05D009478 6.0e-06 55.8 38 71.1
TWI63G1417 Tripterygium wilfordii HOM05D000891 ORTHO05D000761 6.0e-06 55.8 94 29.8
C03p00150 Brassica napus HOM05D003039 ORTHO05D009478 7.9e-06 55.5 40 62.5
BolC3t12581H Brassica oleracea HOM05D003039 ORTHO05D009478 7.9e-06 55.5 40 62.5
MBI19_g32692_MAGBIO Magnolia biondii HOM05D003039 ORTHO05D009478 7.9e-06 55.5 35 68.6
Nitab4.5_0008410g0010 Nicotiana tabacum HOM05D003039 ORTHO05D009478 7.9e-06 55.5 41 68.3
Nitab4.5_0009560g0010 Nicotiana tabacum HOM05D003039 ORTHO05D009478 7.9e-06 55.5 41 68.3


User provided reference genes

Program Settings