Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 7.9e-35 150.2 95 100.0
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.7e-24 115.9 95 81.1
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 4.1e-23 111.3 98 81.6
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 3.5e-22 108.2 90 63.3
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 5.9e-22 107.5 90 63.3
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.9e-21 105.1 98 60.2
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 5.0e-21 104.4 96 78.1
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 6.5e-21 104.0 90 60.0
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 1.5e-20 102.8 101 57.4
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.9e-20 102.4 95 62.1
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.9e-20 102.4 97 57.7
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.5e-20 102.1 88 62.5
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 9.4e-20 100.1 100 56.0
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 2.7e-19 98.6 102 67.6
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 4.7e-19 97.8 101 69.3
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.4e-18 96.3 91 59.3
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 4.0e-18 94.7 98 57.1
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 2.0e-17 92.4 95 66.3
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 2.6e-17 92.0 95 67.4
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 3.4e-17 91.7 95 60.0
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 4.4e-17 91.3 109 45.9
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.7e-17 90.9 97 62.9
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 5.7e-17 90.9 97 63.9
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 9.8e-17 90.1 92 54.3
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.8e-17 90.1 97 63.9
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.3e-16 89.7 102 52.9
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.7e-16 89.4 100 48.0
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 2.2e-16 89.0 107 53.3
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.2e-16 89.0 92 55.4
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.8e-16 88.6 101 51.5
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 4.8e-16 87.8 98 49.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 6.3e-16 87.4 110 50.0
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 6.3e-16 87.4 111 45.0
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-15 86.3 96 52.1
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.4e-15 86.3 96 52.1
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 1.4e-15 86.3 112 50.9
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.4e-15 86.3 107 46.7
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.8e-15 85.9 99 50.5
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 3.1e-15 85.1 97 47.4
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 3.1e-15 85.1 107 45.8
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 4.1e-15 84.7 92 52.2
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 4.1e-15 84.7 89 53.9
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 4.1e-15 84.7 77 58.4
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 4.1e-15 84.7 92 50.0
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.2e-14 83.2 85 52.9
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 1.2e-14 83.2 100 53.0
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.2e-14 83.2 92 48.9
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.2e-14 83.2 92 48.9
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.6e-14 82.8 84 53.6
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.6e-14 82.8 112 49.1
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.6e-14 82.8 99 54.5
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 2.0e-14 82.4 115 48.7
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 2.0e-14 82.4 95 52.6
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.7e-14 82.0 102 55.9
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 2.7e-14 82.0 110 47.3
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 2.7e-14 82.0 101 56.4
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.7e-14 82.0 100 52.0
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 3.5e-14 81.6 109 45.9
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 3.5e-14 81.6 104 51.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.5e-14 81.6 105 48.6
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 3.5e-14 81.6 92 53.3
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 4.5e-14 81.3 88 50.0
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 4.5e-14 81.3 107 47.7
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 4.5e-14 81.3 113 46.9
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 5.9e-14 80.9 93 52.7
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 5.9e-14 80.9 97 48.5
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 1.3e-13 79.7 91 49.5
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 1.3e-13 79.7 88 50.0
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 1.7e-13 79.3 97 51.5
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.7e-13 79.3 96 50.0
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 2.3e-13 79.0 104 50.0
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 2.9e-13 78.6 86 48.8
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 2.9e-13 78.6 103 50.5
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 5.0e-13 77.8 81 53.1
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 5.0e-13 77.8 101 55.4
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 5.0e-13 77.8 90 46.7
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 8.6e-13 77.0 91 50.5
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 8.6e-13 77.0 93 50.5
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 1.1e-12 76.6 98 43.9
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.1e-12 76.6 107 46.7
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.5e-12 76.3 89 52.8
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 2.5e-12 75.5 80 50.0
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.2e-12 75.1 93 46.2
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.5e-12 74.3 106 46.2
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 7.2e-12 73.9 89 53.9
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.2e-12 73.9 88 47.7
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.2e-12 73.9 88 50.0
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 7.2e-12 73.9 99 49.5
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 7.2e-12 73.9 106 44.3
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 7.2e-12 73.9 88 48.9
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 9.5e-12 73.6 96 58.3
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 9.5e-12 73.6 102 47.1
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.2e-11 73.2 88 50.0
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.1e-11 72.4 89 47.2
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 2.8e-11 72.0 108 48.1
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 2.8e-11 72.0 86 46.5
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 2.8e-11 72.0 98 41.8
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 2.8e-11 72.0 98 41.8
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 2.8e-11 72.0 94 43.6
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 2.8e-11 72.0 87 50.6
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 4.7e-11 71.2 94 48.9
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 4.7e-11 71.2 95 49.5
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.7e-11 71.2 89 46.1
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 4.7e-11 71.2 95 43.2
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 6.1e-11 70.9 92 44.6
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.1e-11 70.9 83 51.8
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 8.0e-11 70.5 105 45.7
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.0e-10 70.1 120 55.0
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 1.0e-10 70.1 89 44.9
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.0e-10 70.1 91 46.2
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 1.4e-10 69.7 103 42.7
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 1.4e-10 69.7 103 42.7
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 1.4e-10 69.7 103 42.7
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-10 69.7 89 44.9
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.4e-10 69.7 91 45.1
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.8e-10 69.3 89 44.9
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.8e-10 69.3 103 42.7
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.8e-10 69.3 103 42.7
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 1.8e-10 69.3 129 54.3
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 1.8e-10 69.3 91 45.1
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.8e-10 69.3 92 48.9
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 3.0e-10 68.6 90 50.0
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 3.0e-10 68.6 91 42.9
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 3.0e-10 68.6 95 44.2
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 4.0e-10 68.2 91 47.3
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 4.0e-10 68.2 88 46.6
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.2e-10 67.8 91 46.2
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 6.8e-10 67.4 91 49.5
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 6.8e-10 67.4 97 43.3
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 8.8e-10 67.0 99 44.4
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 1.2e-09 66.6 95 44.2
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.5e-09 66.2 83 51.8
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 2.0e-09 65.9 83 49.4
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.0e-09 65.9 89 49.4
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 2.0e-09 65.9 98 41.8
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 2.0e-09 65.9 90 43.3
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.6e-09 65.5 83 50.6
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 2.6e-09 65.5 108 44.4
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.6e-09 65.5 93 43.0
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 3.4e-09 65.1 80 51.2
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.4e-09 65.1 82 56.1
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.4e-09 65.1 100 46.0
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.4e-09 64.7 83 49.4
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 7.5e-09 63.9 93 47.3
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 7.5e-09 63.9 83 48.2
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 7.5e-09 63.9 83 48.2
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 7.5e-09 63.9 93 47.3
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 7.5e-09 63.9 83 48.2
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 7.5e-09 63.9 99 48.5
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.5e-09 63.9 90 45.6
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 7.5e-09 63.9 90 45.6
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 1.3e-08 63.2 91 45.1
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 1.3e-08 63.2 83 48.2
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.7e-08 62.8 123 44.7
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.7e-08 62.8 123 44.7
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.2e-08 62.4 105 39.0
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 2.8e-08 62.0 82 46.3
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 4.9e-08 61.2 75 49.3
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 4.9e-08 61.2 75 49.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 4.9e-08 61.2 79 43.0
Aqoxy2G03616 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 6.3e-08 60.8 109 37.6
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 6.3e-08 60.8 108 46.3
BraA03t13459Z Brassica rapa HOM05D003940 ORTHO05D004461 8.3e-08 60.5 89 44.9
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.1e-07 60.1 91 44.0
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 1.1e-07 60.1 96 41.7
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.4e-07 59.7 100 39.0
HPP92_025972 Vanilla planifolia HOM05D027912 ORTHO05D004461 3.1e-07 58.5 85 40.0
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 7.0e-07 57.4 83 43.4
Lalb_Chr03g0037101 Lupinus albus HOM05D003940 ORTHO05D004461 1.6e-06 56.2 74 43.2
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 2.7e-06 55.5 77 40.3
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 3.5e-06 55.1 95 38.9
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 4.5e-06 54.7 85 36.5
PGSC0003DMG400013448 Solanum tuberosum HOM05D003940 ORTHO05D004461 5.9e-06 54.3 37 67.6
Carub.0007s2777 Capsella rubella HOM05D003940 ORTHO05D004461 7.8e-06 53.9 96 36.5
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 7.8e-06 53.9 105 38.1


User provided reference genes

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