Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 2.5e-104 382.1 192 100.0
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 3.4e-77 292.0 165 89.7
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 1.9e-75 286.2 165 84.2
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 1.9e-75 286.2 165 84.2
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 3.5e-74 282.0 160 86.2
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 3.0e-73 278.9 165 84.2
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 2.5e-72 275.8 165 83.6
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 7.4e-72 274.2 161 83.2
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 1.6e-71 273.1 160 84.4
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 8.2e-71 270.8 161 83.2
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 1.1e-70 270.4 160 81.9
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 1.4e-70 270.0 165 81.8
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.8e-70 269.6 158 84.2
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 3.1e-70 268.9 158 84.2
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 3.1e-70 268.9 158 84.2
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 3.1e-70 268.9 163 83.4
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 4.0e-70 268.5 158 82.9
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 4.0e-70 268.5 158 82.9
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 1.2e-69 266.9 155 83.2
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 1.5e-69 266.5 156 81.4
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 1.5e-69 266.5 154 82.5
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 5.8e-69 264.6 158 82.9
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 1.7e-68 263.1 162 79.0
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 1.7e-68 263.1 163 78.5
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 2.9e-68 262.3 158 81.0
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 8.4e-68 260.8 152 87.5
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 1.1e-67 260.4 156 80.1
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 1.9e-67 259.6 160 78.8
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 1.9e-67 259.6 160 81.2
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 2.5e-67 259.2 152 83.6
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 2.5e-67 259.2 158 79.1
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 4.2e-67 258.5 160 78.1
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 1.2e-66 256.9 161 76.4
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 3.5e-66 255.4 170 76.5
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 7.9e-66 254.2 156 80.1
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 7.9e-66 254.2 156 80.1
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 7.9e-66 254.2 156 80.1
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 7.9e-66 254.2 156 80.8
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 1.3e-65 253.4 158 78.5
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 1.3e-65 253.4 167 77.2
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 2.3e-65 252.7 156 78.8
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.3e-65 252.7 159 76.7
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 2.3e-65 252.7 159 78.6
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 3.0e-65 252.3 157 79.6
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 3.9e-65 251.9 160 78.8
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 3.9e-65 251.9 150 82.7
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 3.9e-65 251.9 160 76.9
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 3.9e-65 251.9 160 76.9
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 5.1e-65 251.5 160 78.8
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 5.1e-65 251.5 159 76.1
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 5.1e-65 251.5 157 77.7
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 6.7e-65 251.1 157 77.1
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 8.7e-65 250.8 154 80.5
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 1.5e-64 250.0 150 82.0
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 1.5e-64 250.0 159 74.8
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 2.5e-64 249.2 158 77.2
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 2.5e-64 249.2 157 77.1
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 4.3e-64 248.4 157 77.1
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 4.3e-64 248.4 153 77.1
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 5.7e-64 248.1 151 82.1
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 7.4e-64 247.7 154 77.9
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 9.7e-64 247.3 159 74.2
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 1.6e-63 246.5 154 77.9
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 3.7e-63 245.4 160 76.2
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 3.7e-63 245.4 148 79.7
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 6.3e-63 244.6 161 75.2
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.8e-62 243.0 149 78.5
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 2.4e-62 242.7 152 78.3
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 2.4e-62 242.7 156 75.6
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 1.5e-61 240.0 154 77.3
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 3.4e-61 238.8 156 72.4
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 3.4e-61 238.8 157 73.9
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 4.5e-61 238.4 153 74.5
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 1.0e-60 237.3 158 76.6
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 1.3e-60 236.9 154 76.6
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 1.3e-60 236.9 154 76.6
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 1.7e-60 236.5 190 65.8
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 2.9e-60 235.7 154 76.0
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 2.9e-60 235.7 154 76.0
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 3.8e-60 235.3 151 76.8
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 5.0e-60 235.0 155 74.8
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 5.0e-60 235.0 154 76.0
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 6.5e-60 234.6 155 74.8
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 6.5e-60 234.6 154 75.3
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 6.5e-60 234.6 154 76.6
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 8.5e-60 234.2 154 75.3
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 1.4e-59 233.4 155 74.8
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 1.9e-59 233.0 154 75.3
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 3.2e-59 232.3 159 71.7
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 3.2e-59 232.3 156 71.2
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 5.5e-59 231.5 179 66.5
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.7e-58 229.2 143 77.6
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 5.1e-57 224.9 153 70.6
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.5e-53 213.4 177 62.1
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 2.0e-53 213.0 155 67.7
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 2.6e-53 212.6 181 61.3
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 5.7e-48 194.9 153 60.1
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 5.9e-45 184.9 94 93.6
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 2.9e-44 182.6 94 91.5
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 6.5e-44 181.4 118 78.0
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 7.2e-43 177.9 148 58.1
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 8.0e-42 174.5 114 76.3
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 2.6e-40 169.5 149 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 5.7e-40 168.3 160 53.8
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 1.7e-39 166.8 263 42.6
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 2.0e-37 159.8 162 57.4
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 5.9e-37 158.3 111 71.2
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 1.1e-35 154.1 159 49.1
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 2.5e-35 152.9 153 52.3
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 3.0e-33 146.0 155 46.5
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 1.0e-28 131.0 141 46.1
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 1.7e-28 130.2 86 76.7
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 7.2e-19 98.2 76 67.1
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 3.6e-18 95.9 69 63.8
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 2.2e-15 86.7 64 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 3.7e-15 85.9 88 50.0
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 4.1e-14 82.4 62 64.5
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.6e-13 80.5 55 72.7
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 3.5e-13 79.3 45 82.2
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 8.6e-12 74.7 135 37.0
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 3.6e-10 69.3 37 89.2
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 1.8e-09 67.0 37 86.5
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 8.3e-07 58.2 50 62.0


User provided reference genes

Program Settings