Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 0.0e+00 1423.3 726 100.0
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 0.0e+00 1182.9 741 85.0
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 0.0e+00 1078.9 753 78.4
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 7.4e-311 1070.1 753 77.4
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 2.5e-261 905.6 799 66.0
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.8e-256 889.4 820 61.2
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.5e-255 886.3 778 63.2
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 7.7e-255 884.0 775 63.2
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 2.7e-252 875.5 738 65.4
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 1.8e-251 872.8 816 60.8
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 5.9e-247 857.8 817 61.2
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 5.4e-240 834.7 668 67.4
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 9.2e-232 807.4 670 62.1
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 4.5e-231 805.1 698 60.0
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 4.5e-231 805.1 671 61.3
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 1.5e-229 800.0 667 62.2
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 6.8e-227 791.2 659 63.0
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 1.5e-226 790.0 671 61.3
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 3.4e-226 788.9 669 60.7
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 9.8e-226 787.3 676 60.7
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 1.3e-225 786.9 665 61.5
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.2e-225 786.2 676 60.5
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.8e-224 783.1 671 59.9
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 5.4e-224 781.6 670 62.5
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 7.0e-224 781.2 654 61.6
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.0e-223 779.6 679 59.9
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 2.0e-223 779.6 682 60.6
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.3e-222 776.9 670 61.2
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.3e-222 776.2 651 61.9
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 3.9e-222 775.4 676 60.4
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 6.6e-222 774.6 679 59.4
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 8.6e-222 774.2 672 58.3
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.5e-221 773.5 669 60.1
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 5.6e-221 771.5 695 58.1
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.8e-219 766.5 668 60.9
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.1e-219 765.8 676 60.5
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.1e-219 765.8 667 59.4
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 4.0e-219 765.4 675 59.7
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 5.2e-219 765.0 662 60.6
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.5e-218 763.5 672 59.4
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 2.6e-218 762.7 664 59.2
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 1.7e-217 760.0 671 59.6
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 1.7e-217 760.0 663 60.3
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.7e-217 760.0 670 59.1
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 3.7e-217 758.8 668 59.4
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.7e-217 758.8 667 59.1
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 1.9e-216 756.5 662 59.2
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 4.1e-216 755.4 664 58.7
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 5.4e-216 755.0 654 59.5
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 5.4e-216 755.0 668 59.1
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 7.0e-216 754.6 670 59.1
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 7.0e-216 754.6 707 60.4
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.2e-215 753.8 694 57.6
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.7e-215 752.7 654 60.1
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 4.6e-215 751.9 697 57.1
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.7e-214 750.0 720 55.4
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 3.0e-214 749.2 664 58.7
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 5.0e-214 748.4 746 54.6
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 6.6e-214 748.0 654 59.3
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 8.6e-214 747.7 663 58.1
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 8.6e-214 747.7 700 56.3
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 2.5e-213 746.1 665 57.6
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.2e-212 743.8 670 59.1
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 1.2e-212 743.8 721 54.4
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 1.6e-212 743.4 699 55.8
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 3.6e-212 742.3 663 57.8
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 4.7e-212 741.9 663 59.4
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 6.2e-212 741.5 679 59.1
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 6.2e-212 741.5 668 59.1
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 8.1e-212 741.1 668 58.2
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 1.8e-211 740.0 703 56.9
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 1.8e-211 740.0 668 58.2
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.2e-210 737.3 661 60.1
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.6e-210 736.1 668 56.4
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 3.4e-210 735.7 651 57.8
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 2.2e-209 733.0 739 54.9
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 3.7e-209 732.3 671 57.7
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 8.3e-209 731.1 680 57.2
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.1e-208 730.7 672 57.4
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 2.4e-208 729.6 742 54.2
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 4.1e-208 728.8 667 57.4
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 1.2e-207 727.2 642 57.9
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 1.6e-207 726.9 682 56.6
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 3.9e-206 722.2 708 56.4
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 7.3e-205 718.0 644 57.5
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 3.6e-204 715.7 673 56.9
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 4.7e-204 715.3 654 57.0
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 4.7e-204 715.3 697 55.8
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.4e-203 713.8 671 57.1
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 3.1e-203 712.6 748 53.6
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 3.1e-203 712.6 773 50.6
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 5.2e-203 711.8 613 60.0
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 2.6e-202 709.5 655 56.0
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 3.4e-202 709.1 663 56.3
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 3.4e-202 709.1 729 55.3
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 1.3e-201 707.2 662 56.3
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.3e-201 707.2 680 54.9
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 1.7e-201 706.8 679 56.7
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 4.9e-201 705.3 711 53.9
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 6.4e-201 704.9 672 56.0
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 3.5e-199 699.1 661 54.5
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 7.8e-199 698.0 681 54.5
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 5.1e-198 695.3 687 54.3
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 6.8e-195 684.9 666 54.5
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 6.4e-193 678.3 720 51.9
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 3.0e-190 669.5 689 53.8
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 1.1e-189 667.5 653 55.6
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 2.6e-186 656.4 689 53.4
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 4.9e-185 652.1 657 54.0
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 2.7e-183 646.4 639 53.5
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 5.8e-178 628.6 677 51.4
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 3.8e-177 625.9 676 51.0
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.7e-169 600.5 722 47.9
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 1.8e-166 590.5 692 49.4
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.9e-161 573.2 716 47.1
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 1.0e-145 521.5 693 42.9
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 2.0e-141 507.3 627 47.7
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 6.3e-140 502.3 685 43.6
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 3.1e-139 500.0 615 44.9
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 5.4e-107 392.9 426 52.8
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 1.2e-103 381.7 522 39.3
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.8e-102 377.9 308 57.8
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 6.6e-97 359.4 491 39.1
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 3.1e-94 350.5 747 32.4
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 2.5e-80 304.3 455 36.7
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.9e-36 157.9 115 66.1
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.7e-34 151.4 115 65.2
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 2.4e-30 138.3 370 30.0
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 2.4e-22 111.7 185 38.9
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 4.1e-22 110.9 144 47.2
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 7.5e-16 90.1 126 48.4
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 9.7e-16 89.7 126 48.4
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 3.2e-11 74.7 78 52.6
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 3.6e-10 71.2 36 97.2
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 6.1e-10 70.5 80 55.0
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.4e-09 69.3 78 51.3
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 2.4e-06 58.5 91 45.1


User provided reference genes

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