Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 2.2e-82 308.9 159 100.0
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 7.5e-54 214.2 141 82.3
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 7.0e-44 181.0 144 72.2
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.2e-43 180.3 116 77.6
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 1.2e-43 180.3 128 73.4
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 2.7e-43 179.1 150 70.7
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 2.7e-43 179.1 149 69.8
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 3.5e-43 178.7 129 75.2
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 6.0e-43 177.9 147 65.3
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 1.0e-42 177.2 116 77.6
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 1.0e-42 177.2 127 75.6
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 1.3e-42 176.8 140 69.3
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 1.7e-42 176.4 155 65.2
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 2.3e-42 176.0 142 69.0
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 3.9e-42 175.3 138 71.0
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 5.0e-42 174.9 140 68.6
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 5.0e-42 174.9 146 67.8
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 6.6e-42 174.5 143 69.2
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 6.6e-42 174.5 146 70.5
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 8.6e-42 174.1 143 69.9
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 8.6e-42 174.1 126 73.8
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 1.1e-41 173.7 127 73.2
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 1.5e-41 173.3 140 67.9
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 1.9e-41 172.9 121 74.4
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 1.9e-41 172.9 138 69.6
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 2.5e-41 172.6 123 74.0
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 3.3e-41 172.2 116 77.6
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 3.3e-41 172.2 146 65.8
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 4.3e-41 171.8 122 74.6
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 4.3e-41 171.8 117 75.2
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 5.6e-41 171.4 116 76.7
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 5.6e-41 171.4 128 71.1
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 5.6e-41 171.4 120 75.0
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 9.5e-41 170.6 116 76.7
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 9.5e-41 170.6 123 73.2
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 9.5e-41 170.6 117 75.2
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 1.2e-40 170.2 116 75.9
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 1.6e-40 169.9 142 65.5
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 2.1e-40 169.5 140 67.9
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.8e-40 169.1 119 74.8
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 3.6e-40 168.7 116 73.3
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 3.6e-40 168.7 122 69.7
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 3.6e-40 168.7 135 69.6
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 4.7e-40 168.3 119 73.9
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 4.7e-40 168.3 118 77.1
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 4.7e-40 168.3 150 64.0
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 6.2e-40 167.9 123 74.0
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 6.2e-40 167.9 141 66.7
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 6.2e-40 167.9 131 64.9
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 8.1e-40 167.5 116 75.9
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 8.1e-40 167.5 145 63.4
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 1.1e-39 167.2 135 67.4
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 1.1e-39 167.2 144 63.9
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 1.1e-39 167.2 144 61.8
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.4e-39 166.8 143 65.0
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 1.8e-39 166.4 133 67.7
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 1.8e-39 166.4 149 59.7
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.8e-39 166.4 119 73.1
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 1.8e-39 166.4 116 74.1
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 1.8e-39 166.4 147 61.2
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 1.8e-39 166.4 156 62.8
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 2.3e-39 166.0 120 75.0
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 2.3e-39 166.0 143 65.0
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.3e-39 166.0 143 65.0
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 2.3e-39 166.0 132 68.2
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 4.0e-39 165.2 142 63.4
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 4.0e-39 165.2 121 71.9
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 4.0e-39 165.2 129 69.8
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 4.0e-39 165.2 129 69.8
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 5.2e-39 164.9 117 74.4
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 5.2e-39 164.9 142 62.7
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 5.2e-39 164.9 116 73.3
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 6.8e-39 164.5 116 73.3
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 6.8e-39 164.5 124 70.2
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 8.9e-39 164.1 147 59.9
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.2e-38 163.7 138 66.7
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 2.0e-38 162.9 116 72.4
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 2.0e-38 162.9 123 71.5
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 2.0e-38 162.9 123 71.5
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 2.0e-38 162.9 144 63.2
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 2.0e-38 162.9 132 70.5
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 2.6e-38 162.5 120 71.7
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 2.6e-38 162.5 148 62.2
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 3.4e-38 162.2 120 73.3
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 3.4e-38 162.2 147 59.9
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 3.4e-38 162.2 149 63.8
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 7.5e-38 161.0 120 71.7
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 7.5e-38 161.0 148 59.5
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 7.5e-38 161.0 123 68.3
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 9.8e-38 160.6 127 65.4
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 1.3e-37 160.2 138 63.8
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 2.2e-37 159.5 120 70.8
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 2.9e-37 159.1 143 60.8
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 3.2e-36 155.6 111 70.3
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 3.2e-36 155.6 117 70.9
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 5.4e-36 154.8 119 68.1
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 5.4e-36 154.8 128 64.1
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 5.4e-36 154.8 116 69.0
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 9.2e-36 154.1 124 69.4
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 1.2e-35 153.7 122 69.7
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 2.1e-35 152.9 119 68.9
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 2.7e-35 152.5 78 96.2
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 3.5e-35 152.1 116 68.1
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 4.6e-35 151.8 142 62.0
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 4.6e-35 151.8 116 69.8
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 1.3e-34 150.2 119 68.1
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 3.0e-34 149.1 122 66.4
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 6.6e-34 147.9 167 52.1
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 1.9e-33 146.4 154 57.1
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 3.3e-33 145.6 78 89.7
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 2.8e-32 142.5 152 53.9
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 2.8e-32 142.5 162 52.5
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 1.8e-31 139.8 80 83.8
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 8.9e-31 137.5 86 82.6
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 1.2e-30 137.1 96 75.0
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 5.8e-30 134.8 75 82.7
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 8.6e-26 120.9 117 53.8
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 4.7e-24 115.2 113 56.6
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 1.1e-23 114.0 129 51.9
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 1.8e-23 113.2 119 53.8
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 3.1e-23 112.5 86 66.3
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 1.3e-21 107.1 89 64.0
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 2.2e-21 106.3 75 66.7
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 4.2e-20 102.1 75 65.3
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 3.3e-17 92.4 81 55.6
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 8.1e-16 87.8 73 58.9
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 2.8e-08 62.8 36 88.9
VMungo0684G0001 Vigna mungo HOM05D006230 ORTHO05D007598 1.2e-06 57.4 65 47.7


User provided reference genes

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