Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 1.1e-40 169.5 83 100.0
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 6.7e-22 107.1 50 98.0
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 8.8e-22 106.7 60 86.7
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 4.4e-21 104.4 50 96.0
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 2.2e-20 102.1 50 94.0
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 1.8e-19 99.0 50 90.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 3.1e-19 98.2 50 90.0
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 4.1e-19 97.8 50 88.0
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 4.1e-19 97.8 50 90.0
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.3e-19 97.4 51 86.3
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 7.0e-19 97.1 50 86.0
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 9.1e-19 96.7 50 86.0
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.2e-18 96.3 50 86.0
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.6e-18 95.9 50 88.0
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 2.0e-18 95.5 50 84.0
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 2.0e-18 95.5 50 84.0
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 2.0e-18 95.5 50 84.0
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 2.7e-18 95.1 50 84.0
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 2.7e-18 95.1 50 84.0
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.7e-18 95.1 50 86.0
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.7e-18 95.1 50 86.0
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.7e-18 95.1 50 86.0
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 2.7e-18 95.1 50 86.0
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 2.7e-18 95.1 50 84.0
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 3.5e-18 94.7 50 82.0
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 4.5e-18 94.4 50 84.0
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 7.7e-18 93.6 50 84.0
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.0e-17 93.2 50 86.0
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.0e-17 93.2 50 86.0
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 1.0e-17 93.2 50 82.0
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 1.0e-17 93.2 50 82.0
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.0e-17 93.2 54 77.8
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.3e-17 92.8 50 82.0
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.3e-17 92.8 50 82.0
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 1.3e-17 92.8 50 82.0
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 1.3e-17 92.8 50 80.0
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 1.7e-17 92.4 50 82.0
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 2.2e-17 92.0 50 80.0
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 2.9e-17 91.7 50 82.0
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 2.9e-17 91.7 50 80.0
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 3.8e-17 91.3 50 78.0
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 3.8e-17 91.3 50 82.0
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 5.0e-17 90.9 50 82.0
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 6.5e-17 90.5 50 80.0
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 8.5e-17 90.1 66 68.2
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 8.5e-17 90.1 50 78.0
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 8.5e-17 90.1 50 78.0
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 8.5e-17 90.1 50 76.0
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 1.1e-16 89.7 50 78.0
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 1.1e-16 89.7 50 78.0
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.5e-16 89.4 50 76.0
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.5e-16 89.4 50 78.0
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.5e-16 89.4 50 78.0
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.5e-16 89.4 50 76.0
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.9e-16 89.0 50 76.0
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.9e-16 89.0 50 78.0
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 1.9e-16 89.0 50 80.0
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.9e-16 89.0 50 80.0
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 2.5e-16 88.6 50 76.0
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 2.5e-16 88.6 50 76.0
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.5e-16 88.6 50 76.0
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 2.5e-16 88.6 50 78.0
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 3.2e-16 88.2 50 76.0
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 3.2e-16 88.2 50 78.0
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 4.2e-16 87.8 49 77.6
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 4.2e-16 87.8 50 76.0
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 4.2e-16 87.8 50 78.0
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 5.5e-16 87.4 50 78.0
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 5.5e-16 87.4 50 76.0
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 5.5e-16 87.4 50 74.0
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 7.2e-16 87.0 50 74.0
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 7.2e-16 87.0 50 76.0
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 9.4e-16 86.7 50 76.0
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 9.4e-16 86.7 50 74.0
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.2e-15 86.3 50 76.0
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 2.1e-15 85.5 49 75.5
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.1e-15 85.5 50 74.0
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 2.7e-15 85.1 49 73.5
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 3.6e-15 84.7 50 76.0
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 3.6e-15 84.7 50 74.0
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 3.6e-15 84.7 50 74.0
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 4.7e-15 84.3 49 71.4
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 4.7e-15 84.3 50 76.0
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 4.7e-15 84.3 50 72.0
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 6.1e-15 84.0 50 70.0
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 8.0e-15 83.6 50 74.0
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 1.8e-14 82.4 49 71.4
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.3e-14 82.0 50 72.0
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.0e-14 81.6 50 70.0
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 3.0e-14 81.6 49 69.4
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 4.0e-14 81.3 50 70.0
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 5.2e-14 80.9 50 68.0
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 5.2e-14 80.9 50 70.0
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 8.8e-14 80.1 49 73.5
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 8.8e-14 80.1 66 59.1
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 3.4e-13 78.2 50 68.0
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 7.5e-13 77.0 49 65.3
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.7e-12 75.9 72 52.8
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.8e-12 75.1 54 59.3
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 4.8e-12 74.3 77 48.1
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.1e-11 73.2 64 51.6
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 5.4e-11 70.9 64 50.0
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.2e-10 69.7 64 48.4
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 2.7e-10 68.6 49 55.1
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 2.5e-08 62.0 49 46.9
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.6e-07 59.3 49 44.9
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 4.7e-07 57.8 50 56.0
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 2.3e-06 55.5 49 44.9
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 8.8e-06 53.5 39 66.7


User provided reference genes

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