Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 4.2e-123 444.9 254 100.0
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 1.4e-62 243.8 246 61.8
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 2.3e-57 226.5 268 58.6
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 2.9e-55 219.5 260 52.3
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 2.1e-50 203.4 259 53.3
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 2.3e-49 199.9 257 52.9
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 3.1e-49 199.5 261 55.6
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 9.8e-48 194.5 265 52.1
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 3.2e-38 162.9 259 45.2
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 2.9e-31 139.8 243 42.4
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 1.4e-22 110.9 277 35.4
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 1.4e-22 110.9 255 35.3
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 2.3e-20 103.6 288 33.7
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 2.5e-19 100.1 86 58.1
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 1.3e-18 97.8 85 57.6
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 1.6e-18 97.4 84 54.8
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 1.6e-18 97.4 276 34.1
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 2.1e-18 97.1 160 43.1
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 3.6e-18 96.3 301 32.6
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 4.8e-18 95.9 316 30.7
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 6.2e-18 95.5 148 40.5
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 6.2e-18 95.5 93 48.4
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 1.1e-17 94.7 320 32.8
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 1.8e-17 94.0 135 40.0
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 2.4e-17 93.6 317 31.2
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 5.3e-17 92.4 92 50.0
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 1.2e-16 91.3 82 54.9
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 1.2e-16 91.3 82 54.9
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 1.2e-16 91.3 125 44.8
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 1.5e-16 90.9 293 29.4
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 2.0e-16 90.5 82 53.7
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 3.4e-16 89.7 150 43.3
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 3.4e-16 89.7 150 41.3
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 4.5e-16 89.4 150 41.3
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 5.8e-16 89.0 143 41.3
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 7.6e-16 88.6 81 50.6
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 1.3e-15 87.8 145 40.0
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 1.7e-15 87.4 82 54.9
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 1.7e-15 87.4 83 54.2
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 2.2e-15 87.0 127 42.5
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 2.2e-15 87.0 127 42.5
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 2.2e-15 87.0 125 44.0
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 2.2e-15 87.0 127 42.5
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 2.2e-15 87.0 83 54.2
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 2.9e-15 86.7 98 50.0
Glyma.11G100200 Glycine max HOM05D025712 ORTHO05D029749 2.9e-15 86.7 213 35.7
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 4.9e-15 85.9 82 48.8
Glyma.12G026100 Glycine max HOM05D025712 ORTHO05D029749 4.9e-15 85.9 211 39.8
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 4.9e-15 85.9 83 55.4
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 4.9e-15 85.9 132 40.9
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 6.4e-15 85.5 139 40.3
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 6.4e-15 85.5 86 48.8
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 8.4e-15 85.1 92 46.7
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 1.1e-14 84.7 108 41.7
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 1.1e-14 84.7 133 36.8
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 1.4e-14 84.3 97 43.3
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.4e-14 84.3 115 42.6
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 1.4e-14 84.3 296 30.7
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 1.9e-14 84.0 107 43.0
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 1.9e-14 84.0 321 28.0
DCAR_002584 Daucus carota HOM05D006433 ORTHO05D005382 1.9e-14 84.0 81 51.9
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.4e-14 83.6 293 29.7
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 9.3e-14 81.6 261 28.7
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 9.3e-14 81.6 268 28.4
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 1.2e-13 81.3 89 46.1
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 1.2e-13 81.3 123 38.2
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 1.6e-13 80.9 131 40.5
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 1.6e-13 80.9 91 47.3
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 1.6e-13 80.9 110 46.4
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 2.1e-13 80.5 294 28.9
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 3.5e-13 79.7 84 44.0
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 3.5e-13 79.7 162 36.4
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 3.5e-13 79.7 162 36.4
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 3.5e-13 79.7 86 45.3
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 4.6e-13 79.3 82 52.4
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 4.6e-13 79.3 134 39.6
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 6.0e-13 79.0 91 42.9
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 6.0e-13 79.0 319 27.6
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 7.9e-13 78.6 288 30.9
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 7.9e-13 78.6 103 45.6
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 1.0e-12 78.2 314 28.7
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 1.0e-12 78.2 109 42.2
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 1.3e-12 77.8 91 41.8
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 1.3e-12 77.8 94 43.6
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 1.3e-12 77.8 146 33.6
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 1.8e-12 77.4 85 48.2
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 2.3e-12 77.0 109 38.5
AUR62017700 Chenopodium quinoa HOM05D006433 ORTHO05D005382 2.3e-12 77.0 85 45.9
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 3.0e-12 76.6 115 40.0
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 3.0e-12 76.6 82 50.0
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 3.0e-12 76.6 127 38.6
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 3.9e-12 76.3 91 40.7
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 5.1e-12 75.9 109 37.6
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 6.7e-12 75.5 126 41.3
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 8.7e-12 75.1 87 44.8
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 1.5e-11 74.3 127 37.0
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 2.5e-11 73.6 81 45.7
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 5.6e-11 72.4 276 28.6
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 2.1e-10 70.5 85 42.4
Aqoxy5G03711 Aquilegia oxysepala HOM05D006433 ORTHO05D005382 2.8e-10 70.1 80 41.2
Sc06g0007710 Simmondsia chinensis HOM05D006433 ORTHO05D005382 2.8e-10 70.1 88 47.7
CANSAT56G2818 Cannabis sativa HOM05D006433 ORTHO05D005382 3.6e-10 69.7 144 36.8
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 3.6e-10 69.7 89 41.6
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 3.6e-10 69.7 83 42.2
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 3.6e-10 69.7 83 42.2
BcaB08g37272 Brassica carinata HOM05D006433 ORTHO05D005382 2.4e-09 67.0 63 50.8
Rhsim06G0192100 Rhododendron simsii HOM05D012187 ORTHO05D021147 2.4e-09 67.0 96 43.8
COL.COLO4_06754 Corchorus olitorius HOM05D008701 ORTHO05D010238 3.1e-09 66.6 73 45.2
SEGI_06945 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 6.9e-09 65.5 118 36.4
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 1.2e-08 64.7 82 41.5
SalBow2G0414 Salvia bowleyana HOM05D006433 ORTHO05D005382 1.2e-08 64.7 135 34.8
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 1.5e-08 64.3 120 33.3
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 1.5e-08 64.3 117 35.0
MBI02_g25137_MAGBIO Magnolia biondii HOM05D008701 ORTHO05D010238 2.0e-08 63.9 90 37.8
Aa31LG3G18330 Aethionema arabicum HOM05D006433 ORTHO05D005382 2.6e-08 63.5 146 36.3
BcaNung05094 Brassica carinata HOM05D006433 ORTHO05D005382 3.4e-08 63.2 143 32.2
TWI36G1014 Tripterygium wilfordii HOM05D008701 ORTHO05D010238 4.5e-08 62.8 64 50.0
MSTRG.13683 Avicennia marina HOM05D006433 ORTHO05D005382 7.6e-08 62.0 81 39.5
Duzib213G0120 Durio zibethinus HOM05D013385 ORTHO05D005382 7.6e-08 62.0 77 40.3
A03p03690 Brassica napus HOM05D006433 ORTHO05D005382 9.9e-08 61.6 221 29.9
Dinv02575 Davidia involucrata HOM05D008701 ORTHO05D028399 1.3e-07 61.2 77 44.2
Potri.013G149300 Populus trichocarpa HOM05D008701 ORTHO05D010238 1.3e-07 61.2 80 40.0
Gorai.005G206900 Gossypium raimondii HOM05D008701 ORTHO05D010238 1.7e-07 60.8 71 46.5
BraA03t09717Z Brassica rapa HOM05D006433 ORTHO05D005382 2.9e-07 60.1 221 29.4
Gohir.D02G184600 Gossypium hirsutum HOM05D008701 ORTHO05D010238 2.9e-07 60.1 71 46.5
PSO782G4784 Papaver somniferum HOM05D061112 ORTHO05D005382 2.9e-07 60.1 140 31.4
MELO3C023593.2 Cucumis melo HOM05D027220 ORTHO05D005382 3.8e-07 59.7 99 35.4
Duzib213G0682 Durio zibethinus HOM05D013385 ORTHO05D005382 3.8e-07 59.7 77 39.0
Thecc.07G068900 Theobroma cacao HOM05D013385 ORTHO05D005382 3.8e-07 59.7 108 37.0
arahy.Tifrunner.gnm1.ann1.4W5XID Arachis hypogaea HOM05D056638 ORTHO05D005382 4.9e-07 59.3 285 29.1
C03p04180 Brassica napus HOM05D006433 ORTHO05D005382 4.9e-07 59.3 222 31.1
Manes.15G081600 Manihot esculenta HOM05D006433 ORTHO05D005382 4.9e-07 59.3 69 42.0
Oeu063832.1 Olea europaea HOM05D006433 ORTHO05D005382 8.4e-07 58.5 112 34.8
HPP92_022556 Vanilla planifolia HOM05D006433 ORTHO05D005382 8.4e-07 58.5 125 36.8
Haze_13046 Corylus avellana HOM05D008701 ORTHO05D010238 1.1e-06 58.2 76 44.7
Migut.H01894 Erythranthe guttata HOM05D012187 ORTHO05D005382 1.1e-06 58.2 90 41.1
Sed0004092 Sechium edule HOM05D027220 ORTHO05D005382 1.1e-06 58.2 81 40.7
SEGI_22038 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 1.1e-06 58.2 121 31.4
Thecc.02G167700 Theobroma cacao HOM05D008701 ORTHO05D010238 1.4e-06 57.8 79 41.8
TAR624G0030 Trochodendron aralioides HOM05D008701 ORTHO05D010238 1.4e-06 57.8 115 33.9
TAR624G0398 Trochodendron aralioides HOM05D008701 ORTHO05D010238 1.4e-06 57.8 115 33.9
BcaB01g05621 Brassica carinata HOM05D006433 ORTHO05D005382 1.9e-06 57.4 221 29.9
BolC3t12950H Brassica oleracea HOM05D006433 ORTHO05D005382 1.9e-06 57.4 221 29.9
Duzib052G1245 Durio zibethinus HOM05D008701 ORTHO05D010238 1.9e-06 57.4 73 43.8
Gohir.A03G161300 Gossypium hirsutum HOM05D008701 ORTHO05D010238 2.4e-06 57.0 64 46.9
Oeu013185.1 Olea europaea HOM05D006433 ORTHO05D005382 2.4e-06 57.0 112 35.7
PSO063G0432 Papaver somniferum HOM05D061112 ORTHO05D005382 2.4e-06 57.0 105 34.3
SEGI_32645 Sequoiadendron giganteum HOM05D006433 ORTHO05D005382 2.4e-06 57.0 91 36.3
Lj3g0001927 Lotus japonicus HOM05D015882 ORTHO05D014071 5.5e-06 55.8 75 38.7
CiPaw.03G167300 Carya illinoinensis HOM05D008701 ORTHO05D010238 7.1e-06 55.5 128 33.6
Manes.03G117800 Manihot esculenta HOM05D006433 ORTHO05D020383 9.3e-06 55.1 78 37.2


User provided reference genes

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