Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G278700 Glycine max HOM05D002560 ORTHO05D013637 3.8e-79 298.1 153 100.0
Glyma.09G278500 Glycine max HOM05D002560 ORTHO05D003782 2.7e-53 212.2 125 88.0
Lj1g0007869 Lotus japonicus HOM05D002560 ORTHO05D003782 2.7e-53 212.2 128 85.9
Glyma.18G210300 Glycine max HOM05D002560 ORTHO05D003782 1.0e-52 210.3 125 87.2
arahy.Tifrunner.gnm1.ann1.7K02KP Arachis hypogaea HOM05D002560 ORTHO05D003782 1.4e-52 209.9 125 87.2
arahy.Tifrunner.gnm1.ann1.PPI0JG Arachis hypogaea HOM05D002560 ORTHO05D003782 1.4e-52 209.9 125 87.2
Ca_07738_v3 Cicer arietinum L. HOM05D002560 ORTHO05D003782 3.0e-52 208.8 125 86.4
arahy.Tifrunner.gnm1.ann1.D1231E Arachis hypogaea HOM05D002560 ORTHO05D003782 6.8e-52 207.6 125 85.6
Psat3g122440 Pisum sativum HOM05D002560 ORTHO05D003782 6.8e-52 207.6 125 85.6
arahy.Tifrunner.gnm1.ann1.IZK0HU Arachis hypogaea HOM05D002560 ORTHO05D003782 1.5e-51 206.5 125 85.6
Lalb_Chr19g0124111 Lupinus albus HOM05D002560 ORTHO05D003782 2.6e-51 205.7 125 84.0
Medtr7g072330 Medicago truncatula HOM05D002560 ORTHO05D003782 2.6e-51 205.7 125 84.8
TPR.G35291 Trifolium pratense HOM05D002560 ORTHO05D003782 3.4e-51 205.3 124 85.5
Phvul.008G087800 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 5.7e-51 204.5 125 85.6
arahy.Tifrunner.gnm1.ann1.TV2NT7 Arachis hypogaea HOM05D002560 ORTHO05D003782 7.5e-51 204.1 123 83.7
VMungo1383G3009 Vigna mungo HOM05D002560 ORTHO05D003782 7.5e-51 204.1 125 84.8
arahy.Tifrunner.gnm1.ann1.6VEX49 Arachis hypogaea HOM05D002560 ORTHO05D003782 1.3e-50 203.4 123 82.9
TPR.G35288 Trifolium pratense HOM05D002560 ORTHO05D003782 2.2e-50 202.6 121 84.3
arahy.Tifrunner.gnm1.ann1.UH8YKH Arachis hypogaea HOM05D002560 ORTHO05D013637 2.8e-50 202.2 125 84.0
Phvul.008G088100 Phaseolus vulgaris HOM05D002560 ORTHO05D003782 2.4e-49 199.1 119 84.0
Cpa.g.sc86.9 Carica papaya HOM05D002560 ORTHO05D013637 5.9e-48 194.5 128 78.9
TAR369G0139 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.7e-47 193.0 125 78.4
EL10Ac7g17038 Beta vulgaris HOM05D002560 ORTHO05D003782 6.5e-47 191.0 125 79.2
Gorai.011G130300 Gossypium raimondii HOM05D002560 ORTHO05D003782 1.1e-46 190.3 125 80.0
MD04G1169600 Malus domestica HOM05D002560 ORTHO05D003782 1.9e-46 189.5 125 78.4
COL.COLO4_08633 Corchorus olitorius HOM05D002560 ORTHO05D003782 2.5e-46 189.1 125 79.2
Gohir.D10G118500 Gossypium hirsutum HOM05D002560 ORTHO05D003782 2.5e-46 189.1 125 80.0
Nn2g13307 Nelumbo nucifera HOM05D002560 ORTHO05D003782 2.5e-46 189.1 125 78.4
Gohir.A10G147600 Gossypium hirsutum HOM05D002560 ORTHO05D003782 4.2e-46 188.3 125 79.2
TAR623G1646 Trochodendron aralioides HOM05D002560 ORTHO05D003782 4.2e-46 188.3 125 78.4
Lsat_1_v5_gn_9_38100 Lactuca sativa HOM05D002560 ORTHO05D003782 7.2e-46 187.6 123 78.0
Hund19809 Selenicereus undatus HOM05D002560 ORTHO05D003782 7.2e-46 187.6 124 77.4
Prupe.6G288100 Prunus persica HOM05D002560 ORTHO05D003782 9.4e-46 187.2 125 77.6
CANSAT35G0319 Cannabis sativa HOM05D002560 ORTHO05D003782 1.2e-45 186.8 121 76.9
Ah.08g209810 Amaranthus hybridus HOM05D002560 ORTHO05D003782 2.1e-45 186.0 125 75.2
Migut.J00073 Erythranthe guttata HOM05D002560 ORTHO05D003782 2.7e-45 185.7 131 74.0
QL07p033277 Quercus lobata HOM05D002560 ORTHO05D003782 3.6e-45 185.3 120 78.3
Hma1.2p1_1349F.1_g277330 Hydrangea macrophylla HOM05D002560 ORTHO05D013637 4.7e-45 184.9 121 76.0
HanXRQChr15g0463501 Helianthus annuus HOM05D002560 ORTHO05D003782 8.0e-45 184.1 136 71.3
Rhsim04G0123300 Rhododendron simsii HOM05D002560 ORTHO05D003782 8.0e-45 184.1 124 76.6
HanXRQChr10g0288601 Helianthus annuus HOM05D002560 ORTHO05D003782 1.0e-44 183.7 122 77.0
Lj3C943G3 Lonicera japonica HOM05D002560 ORTHO05D003782 1.4e-44 183.3 130 73.1
MD12G1183600 Malus domestica HOM05D002560 ORTHO05D003782 1.4e-44 183.3 128 75.8
Oeu057979.2 Olea europaea HOM05D002560 ORTHO05D003782 1.4e-44 183.3 131 73.3
Hund03758 Selenicereus undatus HOM05D002560 ORTHO05D003782 1.4e-44 183.3 122 77.9
CAN.G1189.1 Capsicum annuum HOM05D002560 ORTHO05D003782 1.8e-44 183.0 125 76.0
Manes.08G174400 Manihot esculenta HOM05D002560 ORTHO05D003782 1.8e-44 183.0 118 78.0
Ciclev10010918m.g Citrus clementina HOM05D002560 ORTHO05D003782 2.3e-44 182.6 122 76.2
Gohir.A02G005400 Gossypium hirsutum HOM05D002560 ORTHO05D003782 2.3e-44 182.6 125 77.6
Gohir.D02G005900 Gossypium hirsutum HOM05D002560 ORTHO05D003782 2.3e-44 182.6 125 77.6
Gorai.005G006600 Gossypium raimondii HOM05D002560 ORTHO05D003782 2.3e-44 182.6 125 77.6
CSS0020454 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 4.0e-44 181.8 125 73.6
Lalb_Chr01g0023591 Lupinus albus HOM05D002560 ORTHO05D003782 4.0e-44 181.8 126 77.8
Manes.09G114600 Manihot esculenta HOM05D002560 ORTHO05D003782 4.0e-44 181.8 118 78.0
Peaxi162Scf00744g00021 Petunia axillaris HOM05D002560 ORTHO05D003782 4.0e-44 181.8 125 75.2
Thecc.04G156800 Theobroma cacao HOM05D002560 ORTHO05D003782 5.2e-44 181.4 125 76.8
Cpa.g.sc86.11 Carica papaya HOM05D002560 ORTHO05D013637 8.8e-44 180.6 125 74.4
Nitab4.5_0004394g0020 Nicotiana tabacum HOM05D002560 ORTHO05D003782 8.8e-44 180.6 125 75.2
Aqoxy4G02161 Aquilegia oxysepala HOM05D002560 ORTHO05D003782 1.2e-43 180.3 124 75.0
Cfa017080 Carpinus fangiana HOM05D002560 ORTHO05D003782 1.2e-43 180.3 124 75.8
Haze_21118 Corylus avellana HOM05D002560 ORTHO05D003782 1.2e-43 180.3 124 75.8
MBI15_g10510_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D003782 1.5e-43 179.9 122 76.2
PSO017G3901 Papaver somniferum HOM05D002560 ORTHO05D003782 2.0e-43 179.5 122 74.6
PSO170G0779 Papaver somniferum HOM05D002560 ORTHO05D003782 2.0e-43 179.5 122 74.6
Solyc09g014780.3 Solanum lycopersicum HOM05D002560 ORTHO05D003782 2.0e-43 179.5 125 74.4
Sopen09g007660 Solanum pennellii HOM05D002560 ORTHO05D003782 2.0e-43 179.5 125 74.4
PGSC0003DMG400017035 Solanum tuberosum HOM05D002560 ORTHO05D003782 2.0e-43 179.5 125 74.4
CSS0041781 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 5.7e-43 177.9 129 71.3
AUR62006388 Chenopodium quinoa HOM05D002560 ORTHO05D003782 5.7e-43 177.9 124 72.6
AUR62029728 Chenopodium quinoa HOM05D002560 ORTHO05D003782 5.7e-43 177.9 124 71.0
Actinidia20781 Actinidia chinensis HOM05D002560 ORTHO05D003782 7.5e-43 177.6 124 74.2
DCAR_023988 Daucus carota HOM05D002560 ORTHO05D003782 7.5e-43 177.6 121 72.7
Nitab4.5_0000047g0010 Nicotiana tabacum HOM05D002560 ORTHO05D003782 7.5e-43 177.6 122 75.4
Sc02g0000740 Simmondsia chinensis HOM05D002560 ORTHO05D003782 9.8e-43 177.2 134 67.9
CARHR083160 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.3e-42 176.8 120 73.3
CiPaw.10G163200 Carya illinoinensis HOM05D002560 ORTHO05D003782 1.7e-42 176.4 125 73.6
Nn2g11069 Nelumbo nucifera HOM05D002560 ORTHO05D003782 1.7e-42 176.4 117 76.1
Actinidia11535 Actinidia chinensis HOM05D002560 ORTHO05D003782 2.2e-42 176.0 119 73.9
Potri.006G106600 Populus trichocarpa HOM05D002560 ORTHO05D003782 2.2e-42 176.0 119 73.1
AL3G19840 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 2.8e-42 175.6 120 72.5
AT3G08850 Arabidopsis thaliana HOM05D002560 ORTHO05D003782 2.8e-42 175.6 120 72.5
BcaB04g18570 Brassica carinata HOM05D002560 ORTHO05D003782 2.8e-42 175.6 120 72.5
BcaC01g04199 Brassica carinata HOM05D002560 ORTHO05D003782 2.8e-42 175.6 120 72.5
RcHm_v2.0_Chr3g0461291 Rosa chinensis HOM05D002560 ORTHO05D003782 2.8e-42 175.6 117 76.9
Carub.0003s0796 Capsella rubella HOM05D002560 ORTHO05D003782 3.7e-42 175.3 120 72.5
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 3.7e-42 175.3 127 71.7
FvH4_6g10400 Fragaria vesca HOM05D002560 ORTHO05D003782 3.7e-42 175.3 117 76.9
FAN05G0561 Fragaria x ananassa HOM05D002560 ORTHO05D003782 3.7e-42 175.3 117 76.9
FAN05G5301 Fragaria x ananassa HOM05D002560 ORTHO05D003782 3.7e-42 175.3 117 76.9
FAN09G2734 Fragaria x ananassa HOM05D002560 ORTHO05D003782 3.7e-42 175.3 117 76.9
FAN14G2820 Fragaria x ananassa HOM05D002560 ORTHO05D003782 3.7e-42 175.3 117 76.9
Aa31LG5G18820 Aethionema arabicum HOM05D002560 ORTHO05D003782 4.9e-42 174.9 120 72.5
TWI53G1929 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 6.3e-42 174.5 127 74.0
Atru.chr8.2363 Acer truncatum HOM05D002560 ORTHO05D013637 8.3e-42 174.1 122 70.5
Sc20g0006790 Simmondsia chinensis HOM05D002560 ORTHO05D003782 8.3e-42 174.1 124 71.0
THA.LOC104827066 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 1.1e-41 173.7 125 70.4
TWI77G0423 Tripterygium wilfordii HOM05D002560 ORTHO05D003782 1.1e-41 173.7 127 73.2
DCAR_015351 Daucus carota HOM05D002560 ORTHO05D003782 2.4e-41 172.6 119 69.7
Sabra06G0083000 Salix brachista HOM05D002560 ORTHO05D003782 2.4e-41 172.6 119 71.4
THA.LOC104816173 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 2.4e-41 172.6 148 62.8
CiPaw.09G217200 Carya illinoinensis HOM05D002560 ORTHO05D003782 5.4e-41 171.4 125 71.2
Cc06_g00590 Coffea canephora HOM05D002560 ORTHO05D003782 9.2e-41 170.6 131 67.2
Duzib212G0261 Durio zibethinus HOM05D002560 ORTHO05D003782 2.7e-40 169.1 125 72.0
FAN02G0292 Fragaria x ananassa HOM05D002560 ORTHO05D003782 5.9e-40 167.9 117 75.2
Actinidia29053 Actinidia chinensis HOM05D002560 ORTHO05D003782 7.7e-40 167.5 119 70.6
Potri.016G132000 Populus trichocarpa HOM05D002560 ORTHO05D003782 1.0e-39 167.2 119 70.6
CDE04G1751 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 1.3e-39 166.8 125 67.2
Sp6g41030 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.3e-39 166.8 120 69.2
Sopen10g027890 Solanum pennellii HOM05D002560 ORTHO05D013637 2.3e-39 166.0 122 69.7
Thhalv10012449m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 3.8e-39 165.2 120 67.5
Thhalv10019904m.g Eutrema salsugineum HOM05D002560 ORTHO05D003782 3.8e-39 165.2 120 68.3
Zm00001eb404940 Zea mays HOM05D002560 ORTHO05D003782 5.0e-39 164.9 126 65.1
Aa31LG1G23430 Aethionema arabicum HOM05D002560 ORTHO05D003782 6.6e-39 164.5 129 65.1
Os12g0110000 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 6.6e-39 164.5 118 69.5
TAR636G3231 Trochodendron aralioides HOM05D002560 ORTHO05D003782 1.5e-38 163.3 121 70.2
Os11g0109933 Oryza sativa ssp. japonica HOM05D002560 ORTHO05D003782 3.3e-38 162.2 118 68.6
AL6G10260 Arabidopsis lyrata HOM05D002560 ORTHO05D003782 4.3e-38 161.8 120 68.3
vmacro08922 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 5.6e-38 161.4 110 75.5
CDE12G0125 Ceratophyllum demersum HOM05D002560 ORTHO05D003782 7.3e-38 161.0 124 65.3
Sabra04G0150100 Salix brachista HOM05D002560 ORTHO05D003782 7.3e-38 161.0 125 66.4
HanXRQChr10g0288611 Helianthus annuus HOM05D002560 ORTHO05D003782 9.5e-38 160.6 122 67.2
Peaxi162Scf00595g00112 Petunia axillaris HOM05D002560 ORTHO05D003782 1.6e-37 159.8 125 63.2
SGA_v2.0_scaffold85G26659 Striga asiatica HOM05D002560 ORTHO05D003782 1.6e-37 159.8 121 67.8
Sed0022812 Sechium edule HOM05D002560 ORTHO05D003782 2.8e-37 159.1 99 79.8
ClCG04G006550 Citrullus lanatus HOM05D002560 ORTHO05D003782 8.0e-37 157.5 98 79.6
vmacro20346 Vaccinium macrocarpon HOM05D002560 ORTHO05D003782 1.0e-36 157.1 123 68.3
CARHR212130 Cardamine hirsuta HOM05D002560 ORTHO05D003782 1.4e-36 156.8 118 65.3
Dinv35441 Davidia involucrata HOM05D002560 ORTHO05D003782 1.8e-36 156.4 131 63.4
arahy.Tifrunner.gnm1.ann1.DD37CG Arachis hypogaea HOM05D002560 ORTHO05D013637 3.0e-36 155.6 118 72.0
AUR62026368 Chenopodium quinoa HOM05D002560 ORTHO05D003782 4.0e-36 155.2 100 77.0
Zm00001eb093980 Zea mays HOM05D002560 ORTHO05D003782 4.0e-36 155.2 126 62.7
AUR62006330 Chenopodium quinoa HOM05D002560 ORTHO05D003782 5.2e-36 154.8 97 79.4
CsaV3_4G026950 Cucumis sativus L. HOM05D002560 ORTHO05D003782 6.8e-36 154.5 98 78.6
arahy.Tifrunner.gnm1.ann1.QBUW59 Arachis hypogaea HOM05D002560 ORTHO05D013637 1.2e-35 153.7 92 84.8
GSVIVG01030232001 Vitis vinifera HOM05D002560 ORTHO05D003782 1.5e-35 153.3 100 76.0
Duzib268G0573 Durio zibethinus HOM05D002560 ORTHO05D003782 2.0e-35 152.9 100 78.0
Zm00001eb195140 Zea mays HOM05D002560 ORTHO05D003782 2.0e-35 152.9 126 63.5
ECA247G0799 Erigeron canadensis HOM05D002560 ORTHO05D003782 5.7e-35 151.4 118 65.3
Rhsim05G0228200 Rhododendron simsii HOM05D002560 ORTHO05D003782 9.8e-35 150.6 123 67.5
Mapoly0002s0262 Marchantia polymorpha HOM05D002560 ORTHO05D003782 1.7e-34 149.8 122 61.5
Duzib151G0314 Durio zibethinus HOM05D002560 ORTHO05D003782 1.1e-33 147.1 101 74.3
Sp3g07250 Schrenkiella parvula HOM05D002560 ORTHO05D003782 1.4e-33 146.7 101 71.3
unitig_27.g24878 Utricularia gibba HOM05D002560 ORTHO05D003782 1.4e-33 146.7 109 70.6
HPP92_015583 Vanilla planifolia HOM05D002560 ORTHO05D003782 3.2e-33 145.6 97 73.2
Pp3c25_7220 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.7e-32 142.5 121 58.7
Hma1.2p1_0174F.1_g077050 Hydrangea macrophylla HOM05D002560 ORTHO05D003782 3.5e-32 142.1 124 58.1
PGR004G0247 Punica granatum HOM05D002560 ORTHO05D003782 4.6e-32 141.7 95 74.7
MSTRG.18962 Avicennia marina HOM05D002560 ORTHO05D003782 5.9e-32 141.4 104 70.2
THA.LOC104823313 Tarenaya hassleriana HOM05D002560 ORTHO05D003782 5.9e-32 141.4 99 71.7
BolC3t16666H Brassica oleracea HOM05D002560 ORTHO05D003782 1.3e-31 140.2 98 70.4
RcHm_v2.0_Chr3g0492271 Rosa chinensis HOM05D002560 ORTHO05D013637 1.7e-31 139.8 107 71.0
BraA03t12804Z Brassica rapa HOM05D002560 ORTHO05D003782 3.9e-31 138.7 97 70.1
BcaC05g29622 Brassica carinata HOM05D002560 ORTHO05D003782 1.1e-30 137.1 97 70.1
A05p39970 Brassica napus HOM05D002560 ORTHO05D003782 1.1e-30 137.1 97 70.1
C05p59010 Brassica napus HOM05D002560 ORTHO05D003782 1.1e-30 137.1 97 70.1
BolC5t34554H Brassica oleracea HOM05D002560 ORTHO05D003782 1.1e-30 137.1 97 70.1
CSS0033860 Camellia sinensis var. sinensis HOM05D002560 ORTHO05D003782 1.1e-30 137.1 118 58.5
MSTRG.5523 Avicennia marina HOM05D002560 ORTHO05D003782 2.5e-30 136.0 104 65.4
Sopen10g027930 Solanum pennellii HOM05D002560 ORTHO05D013637 2.1e-29 132.9 97 67.0
Pp3c9_4770 Physcomitrium patens HOM05D002560 ORTHO05D003782 2.8e-29 132.5 122 54.1
Pp3c17_3950 Physcomitrium patens HOM05D002560 ORTHO05D003782 4.4e-27 125.2 122 51.6
Pp3c15_3360 Physcomitrium patens HOM05D002560 ORTHO05D003782 7.5e-27 124.4 122 52.5
ATR0681G092 Amborella trichopoda HOM05D002560 ORTHO05D013637 1.7e-26 123.2 111 60.4
Lj2C63G17 Lonicera japonica HOM05D002560 ORTHO05D003782 4.9e-26 121.7 126 54.0
SMO334G0080 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 1.6e-24 116.7 123 50.4
GSVIVG01030231001 Vitis vinifera HOM05D002560 ORTHO05D013637 1.9e-22 109.8 125 52.0
MELO3C028507.2 Cucumis melo HOM05D002560 ORTHO05D013637 1.1e-20 104.0 73 76.7
SMO116G0458 Selaginella moellendorffii HOM05D002560 ORTHO05D003782 3.4e-19 99.0 105 47.6
MCO07G246 Micromonas commoda HOM05D002560 ORTHO05D003782 1.9e-17 93.2 130 37.7
Carub.0006s0006 Capsella rubella HOM05D002560 ORTHO05D013637 3.2e-17 92.4 120 43.3
PRCOL_00002325 Prasinoderma coloniale HOM05D002560 ORTHO05D003782 5.4e-17 91.7 145 36.6
AagrBONN_evm.TU.Sc2ySwM_228.3097 Anthoceros agrestis HOM05D002560 ORTHO05D003782 1.0e-15 87.4 71 54.9
CBR_g54859 Chara braunii HOM05D000019 ORTHO05D000353 1.9e-09 66.6 93 43.0
Cre08.g371957 Chlamydomonas reinhardtii HOM05D002560 ORTHO05D003782 2.1e-08 63.2 78 37.2
Cfa024140 Carpinus fangiana HOM05D002560 ORTHO05D003782 3.5e-08 62.4 104 33.7


User provided reference genes

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