Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1633.2 870 100.0
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1523.5 868 93.4
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1433.3 868 88.5
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 0.0e+00 1201.8 869 76.2
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 0.0e+00 1196.0 888 75.3
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 0.0e+00 1192.9 888 75.1
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 0.0e+00 1189.9 869 74.2
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 0.0e+00 1186.0 870 75.3
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 0.0e+00 1174.8 869 74.5
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 0.0e+00 1164.4 869 74.7
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 0.0e+00 1161.0 877 74.0
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 0.0e+00 1152.9 869 73.4
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 0.0e+00 1151.0 848 74.9
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 0.0e+00 1142.9 869 73.2
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 0.0e+00 1138.6 869 73.3
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 0.0e+00 1133.2 845 74.3
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 0.0e+00 1129.8 864 71.9
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 0.0e+00 1088.2 868 70.6
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 0.0e+00 1078.9 847 70.1
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 0.0e+00 1076.6 875 71.1
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 7.0e-303 1043.9 886 66.4
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 3.5e-302 1041.6 888 65.9
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 2.4e-295 1018.8 887 67.5
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 9.1e-295 1016.9 888 65.9
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 1.2e-294 1016.5 885 63.8
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 2.0e-294 1015.8 879 65.9
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 1.3e-293 1013.1 888 65.9
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 8.5e-293 1010.4 885 65.8
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.2e-291 1006.5 887 63.0
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.0e-290 1003.4 887 62.6
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 4.0e-290 1001.5 888 65.0
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 2.0e-289 999.2 873 66.1
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 2.8e-288 995.3 886 63.9
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 5.4e-287 991.1 888 64.4
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 7.2e-284 980.7 885 64.7
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 1.4e-282 976.5 887 63.5
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 6.8e-282 974.2 887 63.5
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 1.2e-275 953.4 861 65.0
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 1.8e-274 949.5 886 61.6
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 8.9e-274 947.2 858 63.5
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 2.2e-272 942.6 888 60.0
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 5.4e-271 937.9 887 62.0
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.6e-267 925.2 887 61.9
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.4e-266 923.3 893 59.5
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 2.0e-265 919.5 887 60.9
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 5.8e-265 917.9 893 59.2
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 9.8e-265 917.1 889 60.6
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 1.4e-263 913.3 881 62.3
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 1.4e-263 913.3 886 60.3
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.4e-263 912.5 886 61.6
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 7.8e-262 907.5 897 58.4
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 3.0e-261 905.6 879 58.4
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 3.9e-261 905.2 878 62.2
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 6.6e-261 904.4 897 61.0
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 6.6e-261 904.4 897 60.9
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.5e-260 903.3 878 62.1
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 5.6e-260 901.4 895 58.8
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 4.7e-259 898.3 889 59.3
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 8.1e-259 897.5 890 58.5
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.8e-258 896.3 890 60.7
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 4.0e-258 895.2 890 58.4
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 1.2e-257 893.6 897 60.5
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.5e-257 893.3 878 61.4
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 4.9e-256 888.3 886 61.9
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 7.1e-255 884.4 885 59.3
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 7.1e-255 884.4 886 57.7
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 1.3e-253 880.2 793 63.8
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 1.3e-253 880.2 793 63.8
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 2.3e-253 879.4 895 59.1
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 1.1e-252 877.1 779 64.4
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 1.1e-252 877.1 898 58.7
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.5e-252 876.7 895 57.2
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 7.3e-252 874.4 892 57.6
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 9.5e-252 874.0 879 60.3
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.2e-251 873.6 895 58.8
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 7.8e-246 854.4 840 62.0
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.3e-245 853.6 731 67.0
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 1.1e-244 850.5 880 57.5
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.9e-244 849.7 885 56.2
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 1.2e-243 847.0 817 61.2
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 4.7e-243 845.1 871 57.3
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.5e-241 840.1 884 55.5
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 2.0e-241 839.7 882 57.0
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.1e-239 833.9 738 66.0
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 5.4e-239 831.6 884 57.1
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 5.6e-236 821.6 863 59.7
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.8e-234 816.6 881 57.0
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 2.2e-232 809.7 883 55.8
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 4.6e-230 802.0 897 54.7
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.1e-228 797.3 898 54.7
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 2.9e-224 782.7 886 53.0
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 4.2e-215 752.3 852 55.8
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 2.8e-211 739.6 885 54.0
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 3.7e-211 739.2 889 55.9
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.8e-211 738.8 883 51.8
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 8.2e-211 738.0 872 52.8
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.5e-207 726.5 863 52.6
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 3.6e-206 722.6 859 54.4
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 2.3e-205 719.9 850 55.5
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 3.9e-205 719.2 884 50.8
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 2.5e-204 716.5 865 55.0
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 2.8e-203 713.0 899 51.8
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 6.9e-202 708.4 867 55.6
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 5.9e-201 705.3 887 49.4
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 1.7e-200 703.7 874 53.5
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 2.9e-200 703.0 865 54.8
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 6.5e-200 701.8 882 54.0
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 9.4e-199 698.0 865 54.6
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 3.9e-197 692.6 878 50.0
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.0e-196 690.3 761 53.4
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 1.4e-194 684.1 883 52.9
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 7.7e-193 678.3 845 48.3
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.4e-191 674.1 876 51.9
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 7.2e-191 671.8 876 52.6
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 2.1e-190 670.2 880 49.3
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 1.8e-189 667.2 880 49.8
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 1.5e-188 664.1 885 50.3
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 4.4e-188 662.5 875 50.7
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.1e-183 647.9 857 52.2
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 9.4e-183 644.8 843 51.1
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.2e-182 644.4 839 52.2
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 1.8e-181 640.6 845 48.9
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 5.2e-181 639.0 711 56.7
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 1.4e-178 630.9 874 51.0
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 1.8e-178 630.6 876 51.0
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 2.7e-177 626.7 873 51.2
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 3.5e-177 626.3 857 51.5
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 4.5e-177 625.9 876 50.7
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.3e-176 624.4 860 49.1
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 2.9e-176 623.2 860 51.3
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.5e-175 620.9 854 52.3
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 4.2e-175 619.4 889 47.8
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 2.7e-174 616.7 896 47.5
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 1.4e-173 614.4 890 47.9
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 4.4e-172 609.4 875 49.9
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 9.8e-172 608.2 874 49.2
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 7.7e-169 598.6 892 48.4
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 7.2e-167 592.0 929 48.1
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.7e-163 580.9 767 49.5
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.0e-161 573.9 807 50.2
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 5.9e-161 572.4 900 47.8
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 1.0e-160 571.6 895 47.8
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 3.2e-154 550.1 850 47.5
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.3e-151 540.0 890 43.5
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 4.1e-146 523.1 822 45.5
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 8.6e-144 515.4 752 49.5
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 3.4e-140 503.4 820 42.9
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.2e-134 485.0 873 44.0
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 3.8e-131 473.4 870 43.9
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 1.5e-127 461.5 445 61.8
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 1.1e-122 445.3 754 45.8
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 4.2e-122 443.4 757 45.8
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 5.4e-122 443.0 880 40.9
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 1.9e-114 417.9 903 40.1
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 8.1e-110 402.5 900 40.0
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 1.4e-109 401.7 896 40.1
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 3.1e-109 400.6 841 40.2
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.9e-107 394.0 400 60.0
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 8.4e-107 392.5 766 41.3
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 1.3e-104 385.2 909 39.3
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 3.9e-104 383.6 907 39.5
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 9.3e-98 362.5 284 65.8
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 3.9e-96 357.1 623 47.5
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 3.6e-89 334.0 818 38.0
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.4e-77 295.4 891 34.9
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.7e-75 288.5 975 33.5
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 2.2e-67 261.5 350 46.6
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.9e-66 258.5 434 44.9
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 1.2e-60 239.2 358 41.9
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 2.7e-60 238.0 359 44.8
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.3e-59 235.7 300 45.3
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 8.0e-57 226.5 301 45.2
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 2.7e-52 211.5 229 52.8
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 6.6e-51 206.8 334 40.1
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.2e-47 196.1 538 35.9
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 2.4e-45 188.3 279 57.0
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.4e-45 188.3 155 58.7
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 4.1e-45 187.6 804 28.1
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 5.0e-43 180.6 97 94.8
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 6.6e-43 180.3 331 38.4
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 2.9e-38 164.9 109 74.3
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 1.2e-36 159.5 287 38.0
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.7e-20 105.1 157 42.0
unitig_27.g24881 Utricularia gibba HOM05D003671 ORTHO05D004285 6.4e-06 57.4 73 39.7


User provided reference genes

Program Settings