Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 6.5e-151 537.3 268 100.0
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 1.2e-123 446.8 249 90.8
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 1.2e-104 383.6 247 80.2
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 1.7e-103 379.8 242 81.4
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 1.5e-99 366.7 234 81.6
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 4.0e-92 342.0 238 71.8
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 1.5e-86 323.6 239 70.3
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 1.0e-79 300.8 233 69.1
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 6.7e-79 298.1 241 64.3
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 6.7e-79 298.1 241 64.3
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.5e-78 297.0 229 69.9
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 2.4e-76 289.7 242 62.8
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 5.8e-75 285.0 248 62.1
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.7e-66 256.9 225 62.2
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 6.5e-66 255.0 225 59.1
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.1e-65 254.2 221 59.7
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 9.3e-65 251.1 233 53.6
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 1.6e-64 250.4 207 64.7
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 7.9e-64 248.1 234 53.8
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 8.7e-63 244.6 237 54.0
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 2.5e-62 243.0 233 54.1
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 3.3e-62 242.7 236 53.8
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 2.2e-61 240.0 236 54.2
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 3.7e-61 239.2 234 54.3
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 4.1e-60 235.7 230 54.8
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 5.3e-60 235.3 233 54.1
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.3e-60 235.3 233 51.5
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 6.9e-60 235.0 233 51.9
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.9e-60 235.0 233 51.5
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.2e-59 234.2 233 51.5
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-59 234.2 233 51.5
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.5e-59 233.8 233 51.9
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.5e-59 233.8 233 51.9
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 2.0e-59 233.4 229 53.7
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.0e-59 233.4 233 50.6
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.6e-59 233.0 233 53.6
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 4.5e-59 232.3 230 52.2
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 5.9e-59 231.9 229 54.6
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 2.2e-58 229.9 233 51.5
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 2.9e-58 229.6 230 50.9
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 2.9e-58 229.6 227 53.3
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 1.4e-57 227.3 231 51.5
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 1.9e-57 226.9 231 49.8
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 4.2e-57 225.7 239 49.4
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 7.2e-57 224.9 228 50.9
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.1e-56 223.4 233 51.5
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 2.7e-56 223.0 229 51.5
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 3.6e-56 222.6 228 50.4
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 4.6e-56 222.2 231 51.1
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 3.0e-55 219.5 229 51.5
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.9e-55 219.2 233 50.2
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 5.1e-55 218.8 235 50.6
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.1e-54 217.6 233 50.6
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 3.3e-54 216.1 235 49.4
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 5.7e-54 215.3 222 51.4
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.7e-53 213.8 233 49.8
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 2.2e-53 213.4 228 49.1
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 3.7e-53 212.6 238 45.8
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.1e-52 211.1 255 48.2
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.8e-52 210.3 233 48.9
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 3.1e-52 209.5 230 47.0
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 1.2e-51 207.6 235 50.2
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.2e-51 207.6 236 47.5
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 1.5e-51 207.2 230 45.2
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 3.4e-51 206.1 230 47.0
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.3e-50 204.1 225 47.6
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.3e-50 204.1 233 46.8
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.7e-50 203.8 230 47.0
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 1.7e-50 203.8 226 48.7
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.9e-50 203.0 224 47.3
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 5.0e-50 202.2 224 47.3
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 6.5e-50 201.8 226 45.1
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 8.5e-50 201.4 221 50.2
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 2.5e-49 199.9 248 44.8
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 2.5e-49 199.9 237 45.6
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.2e-49 199.1 230 47.0
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 5.5e-49 198.7 237 45.6
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 7.2e-49 198.4 232 49.1
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 7.2e-49 198.4 225 46.2
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 2.1e-48 196.8 231 46.3
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 2.1e-48 196.8 237 44.7
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 4.7e-48 195.7 228 45.2
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 4.7e-48 195.7 235 47.7
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 6.1e-48 195.3 229 46.7
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.0e-47 194.5 228 43.9
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 3.0e-47 193.0 236 43.6
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 6.7e-47 191.8 235 44.7
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 2.0e-46 190.3 214 47.2
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 3.3e-46 189.5 221 47.1
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 3.3e-46 189.5 223 43.9
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 9.7e-46 188.0 236 44.1
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 2.8e-45 186.4 223 42.6
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 3.7e-45 186.0 231 45.9
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 5.3e-44 182.2 234 46.2
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 1.5e-43 180.6 226 43.4
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 2.0e-43 180.3 122 73.0
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 2.6e-43 179.9 142 60.6
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 5.9e-43 178.7 235 44.7
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 2.2e-42 176.8 236 40.7
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 2.9e-42 176.4 236 43.6
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 3.8e-42 176.0 223 43.5
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 5.0e-42 175.6 231 43.7
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 5.0e-42 175.6 241 43.6
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 3.2e-41 172.9 231 43.3
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 3.2e-41 172.9 231 43.3
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 9.4e-41 171.4 231 43.7
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 1.6e-40 170.6 243 42.0
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 3.6e-40 169.5 234 44.0
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 4.7e-40 169.1 227 40.5
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 1.0e-39 167.9 160 61.2
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 1.4e-39 167.5 241 41.5
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.3e-39 166.8 233 42.5
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 7.4e-38 161.8 227 41.0
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 5.9e-35 152.1 205 42.0
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 3.2e-33 146.4 117 58.1
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 3.2e-33 146.4 146 52.7
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 1.2e-32 144.4 108 62.0
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 4.7e-32 142.5 138 52.9
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.8e-31 140.6 230 35.2
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 5.2e-31 139.0 214 40.2
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 9.7e-30 134.8 123 56.1
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.7e-29 134.0 208 38.0
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 3.7e-29 132.9 214 33.6
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 6.3e-29 132.1 146 48.6
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 5.3e-28 129.0 210 36.7
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 2.0e-27 127.1 212 37.7
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 5.9e-27 125.6 210 39.0
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.0e-23 114.8 225 32.9
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 3.4e-22 109.8 118 45.8
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 8.3e-21 105.1 141 46.1
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 3.1e-20 103.2 205 33.7
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 4.1e-20 102.8 133 42.9
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 1.6e-19 100.9 132 42.4
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 7.7e-19 98.6 161 36.0
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 1.0e-18 98.2 217 35.0
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 1.3e-18 97.8 239 29.7
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.3e-18 97.8 85 51.8
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.7e-18 97.4 244 34.4
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 1.9e-17 94.0 220 33.2
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 4.2e-17 92.8 89 52.8
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 1.2e-16 91.3 296 28.4
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 1.6e-16 90.9 220 34.5
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.0e-15 88.2 90 45.6
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.0e-15 88.2 192 30.7
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 2.0e-14 84.0 74 43.2
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 2.6e-14 83.6 126 38.1
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.3e-13 81.3 112 36.6
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 1.6e-11 74.3 71 53.5
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 3.3e-09 66.6 34 91.2
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 7.3e-09 65.5 34 88.2
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 9.5e-09 65.1 34 88.2
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 4.7e-08 62.8 35 82.9
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 6.1e-08 62.4 172 28.5
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 4.4e-06 56.2 64 43.8


User provided reference genes

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