Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 1.9e-127 459.1 225 100.0
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 2.9e-120 435.3 225 96.0
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 1.6e-113 412.9 223 90.6
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 1.8e-109 399.4 232 86.2
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 2.3e-109 399.1 232 85.8
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 1.1e-106 390.2 227 83.3
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 6.6e-104 380.9 226 81.9
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 8.6e-104 380.6 210 87.1
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 2.3e-101 372.5 225 80.9
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 5.2e-101 371.3 228 78.9
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 2.2e-99 365.9 226 78.3
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 1.4e-98 363.2 218 79.8
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 1.8e-98 362.8 217 79.7
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 7.0e-98 360.9 210 81.0
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 1.2e-97 360.1 217 79.7
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 1.6e-97 359.8 210 80.5
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 2.7e-97 359.0 217 79.7
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 4.6e-97 358.2 216 79.6
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 4.6e-97 358.2 210 80.5
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 5.9e-97 357.8 209 78.9
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 7.8e-97 357.5 219 78.1
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 7.8e-97 357.5 216 79.2
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 7.8e-97 357.5 219 78.5
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 7.8e-97 357.5 223 76.2
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 1.7e-96 356.3 222 78.4
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 2.3e-96 355.9 210 80.0
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 2.9e-96 355.5 211 79.1
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 5.0e-96 354.8 210 77.6
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 6.6e-96 354.4 216 80.6
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 1.5e-95 353.2 216 76.9
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 5.6e-95 351.3 219 77.6
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 9.5e-95 350.5 216 77.3
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 9.5e-95 350.5 220 75.5
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 9.5e-95 350.5 212 77.4
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 2.1e-94 349.4 222 75.7
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 4.7e-94 348.2 219 75.8
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 4.7e-94 348.2 213 76.5
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 8.0e-94 347.4 220 77.3
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 1.0e-93 347.1 225 75.6
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 6.8e-93 344.4 208 77.4
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 8.9e-93 344.0 220 74.1
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.2e-92 343.6 220 75.5
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.5e-92 343.2 222 74.8
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 2.6e-92 342.4 222 74.8
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 4.4e-92 341.7 208 76.4
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 7.5e-92 340.9 225 71.6
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 1.7e-91 339.7 222 74.3
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 2.2e-91 339.3 223 74.0
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 2.2e-91 339.3 209 77.0
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 2.9e-91 339.0 215 74.0
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 2.9e-91 339.0 210 75.2
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 4.9e-91 338.2 200 77.0
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 1.1e-90 337.0 210 76.7
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 1.4e-90 336.7 216 75.9
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 1.9e-90 336.3 210 75.7
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.9e-90 336.3 220 74.5
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 1.9e-90 336.3 233 70.0
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 3.2e-90 335.5 220 74.5
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 3.5e-89 332.0 210 74.8
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 6.0e-89 331.3 226 73.0
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 7.8e-89 330.9 214 71.5
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 5.0e-88 328.2 214 72.9
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 2.5e-87 325.9 210 71.9
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 3.3e-87 325.5 227 73.1
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 4.3e-87 325.1 227 72.2
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 5.6e-87 324.7 227 72.7
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 9.5e-87 323.9 229 68.1
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 2.1e-86 322.8 216 71.3
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 6.2e-86 321.2 229 71.6
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 6.2e-86 321.2 210 74.3
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 1.4e-85 320.1 216 72.7
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 1.8e-85 319.7 216 72.2
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 1.2e-84 317.0 193 77.2
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 2.0e-84 316.2 230 71.3
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 2.0e-84 316.2 230 71.3
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 7.5e-84 314.3 227 70.0
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 2.9e-83 312.4 178 82.0
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 1.4e-82 310.1 213 70.4
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 4.1e-82 308.5 171 80.1
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 2.7e-81 305.8 178 79.8
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 6.0e-81 304.7 210 66.7
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 8.6e-80 300.8 221 67.0
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 1.6e-78 296.6 249 60.6
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 3.4e-76 288.9 158 81.6
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 2.7e-73 279.3 213 65.3
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 1.3e-72 276.9 180 73.9
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 7.3e-71 271.2 193 64.2
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 3.2e-66 255.8 209 66.0
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 2.7e-65 252.7 214 56.1
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 7.8e-65 251.1 146 76.7
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.0e-64 250.8 168 70.8
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 1.1e-63 247.3 217 62.7
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 5.3e-61 238.4 190 54.7
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 2.6e-60 236.1 209 56.9
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 9.9e-60 234.2 139 77.7
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 9.9e-60 234.2 200 56.0
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 2.4e-58 229.6 142 78.9
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 2.1e-54 216.5 130 75.4
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 2.8e-46 189.5 115 75.7
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 3.8e-43 179.1 124 68.5
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 6.5e-43 178.3 156 52.6
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 6.7e-40 168.3 91 81.3
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 1.4e-37 160.6 219 37.4
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 1.4e-34 150.6 128 61.7
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 1.2e-33 147.5 128 60.2
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 3.5e-33 146.0 219 33.3
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 9.0e-29 131.3 108 57.4
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 5.9e-28 128.6 79 74.7
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 1.1e-26 124.4 166 35.5
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 5.5e-26 122.1 74 75.7
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 2.5e-23 113.2 73 71.2
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 4.3e-23 112.5 58 79.3
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 7.2e-18 95.1 51 80.4
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 1.2e-17 94.4 81 60.5
BolC8t50296H Brassica oleracea HOM05D006727 ORTHO05D008408 2.3e-16 90.1 71 62.0
CBR_g50885 Chara braunii HOM05D006727 ORTHO05D008408 7.4e-15 85.1 126 35.7
Carub.0007s3202 Capsella rubella HOM05D006727 ORTHO05D008408 5.9e-12 75.5 48 79.2
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 1.0e-08 64.7 63 52.4
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 4.4e-07 59.3 94 43.6


User provided reference genes

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