Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 5.0e-44 181.0 112 100.0
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 8.2e-39 163.7 112 84.8
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.9e-37 157.5 116 83.6
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 1.0e-36 156.8 116 83.6
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.2e-26 123.2 113 67.3
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 4.4e-24 114.8 115 61.7
Lj1g0021851 Lotus japonicus HOM05D003683 ORTHO05D004143 1.8e-22 109.4 113 66.4
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.9e-20 102.1 111 60.4
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 1.1e-19 100.1 115 56.5
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 5.2e-17 91.3 77 68.8
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 6.7e-17 90.9 102 54.9
Lalb_Chr01g0021341 Lupinus albus HOM05D003683 ORTHO05D004143 1.3e-15 86.7 114 57.0
arahy.Tifrunner.gnm1.ann1.1L371M Arachis hypogaea HOM05D003683 ORTHO05D004143 1.7e-15 86.3 109 53.2
arahy.Tifrunner.gnm1.ann1.00XFQD Arachis hypogaea HOM05D003683 ORTHO05D004143 6.3e-15 84.3 109 53.2
Ca_07830_v3 Cicer arietinum L. HOM05D003683 ORTHO05D004143 3.1e-14 82.0 112 56.2
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.2e-13 80.1 75 57.3
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.6e-13 79.7 81 54.3
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.7e-12 76.3 102 49.0
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 3.8e-12 75.1 110 47.3
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 5.0e-12 74.7 93 54.8
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 5.0e-12 74.7 112 49.1
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.5e-12 74.3 116 47.4
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 6.5e-12 74.3 94 55.3
Psat3g115360 Pisum sativum HOM05D003683 ORTHO05D004143 6.5e-12 74.3 83 57.8
TPR.G26945 Trifolium pratense HOM05D003683 ORTHO05D004143 1.5e-11 73.2 113 54.0
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.9e-11 72.8 107 50.5
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.2e-11 72.0 92 55.4
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 4.2e-11 71.6 115 45.2
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 7.2e-11 70.9 82 51.2
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 6.1e-10 67.8 103 42.7
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 4.0e-09 65.1 74 54.1
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.8e-09 63.9 70 50.0
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.8e-09 63.9 80 51.2
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.5e-08 63.2 70 50.0
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.5e-08 63.2 70 50.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.5e-08 63.2 70 50.0
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.5e-08 63.2 70 50.0
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 2.0e-08 62.8 99 45.5
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.0e-08 62.8 80 48.8
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.6e-08 62.4 89 47.2
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 3.4e-08 62.0 99 45.5
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.4e-08 62.0 46 71.7
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 4.4e-08 61.6 72 52.8
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 7.5e-08 60.8 69 49.3
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.3e-07 60.1 103 38.8
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.2e-07 59.3 57 57.9
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.8e-07 58.9 65 56.9
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 2.8e-07 58.9 112 43.8
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 3.7e-07 58.5 49 57.1
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 3.7e-07 58.5 54 63.0
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 4.8e-07 58.2 68 51.5
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 4.8e-07 58.2 79 49.4
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 6.3e-07 57.8 69 53.6
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 6.3e-07 57.8 96 44.8
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 8.3e-07 57.4 72 48.6
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 8.3e-07 57.4 66 48.5
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 1.4e-06 56.6 100 41.0
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.8e-06 56.2 72 47.2
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.8e-06 56.2 72 47.2
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.8e-06 56.2 72 47.2
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.8e-06 56.2 72 47.2
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.8e-06 56.2 72 47.2
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.8e-06 56.2 44 61.4
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 2.4e-06 55.8 75 46.7
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.1e-06 55.5 83 47.0
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.1e-06 55.1 66 47.0
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 5.4e-06 54.7 44 63.6
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.4e-06 54.7 48 58.3
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 5.4e-06 54.7 69 44.9
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 7.0e-06 54.3 73 42.5
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 7.0e-06 54.3 74 45.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 7.0e-06 54.3 75 49.3
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 7.0e-06 54.3 47 59.6
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 7.0e-06 54.3 44 63.6
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 7.0e-06 54.3 46 63.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 7.0e-06 54.3 71 45.1
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.0e-06 54.3 47 59.6
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 7.0e-06 54.3 44 61.4
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 7.0e-06 54.3 62 50.0
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 7.0e-06 54.3 56 53.6
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 7.0e-06 54.3 103 39.8
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 9.1e-06 53.9 82 45.1
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 9.1e-06 53.9 54 57.4
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.1e-06 53.9 55 52.7


User provided reference genes

Program Settings