Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 0.0e+00 1500.0 875 100.0
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 0.0e+00 1209.5 863 79.4
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 0.0e+00 1156.0 881 81.4
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 3.6e-299 1031.6 862 69.6
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.9e-277 958.4 892 63.2
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 4.6e-270 934.9 889 63.4
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-269 933.3 876 62.8
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 2.3e-269 932.6 873 63.5
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 4.7e-267 924.9 856 64.0
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 2.9e-264 915.6 864 64.4
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 2.9e-264 915.6 864 64.4
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 7.8e-262 907.5 843 65.6
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 6.6e-261 904.4 887 62.7
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 1.5e-260 903.3 882 61.7
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 4.3e-260 901.7 860 64.9
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 5.1e-253 878.2 897 61.3
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 5.6e-252 874.8 871 59.8
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-244 849.7 817 63.5
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.6e-235 820.1 875 57.8
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 5.3e-234 815.1 911 59.1
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 5.8e-233 811.6 858 56.9
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 2.2e-232 809.7 866 58.7
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 5.0e-232 808.5 878 56.9
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 1.8e-229 800.0 870 60.5
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 3.3e-228 795.8 867 59.2
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 7.7e-225 784.6 827 58.4
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 1.9e-223 780.0 903 54.4
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 5.5e-223 778.5 868 58.4
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 7.9e-222 774.6 861 55.9
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 5.1e-221 771.9 876 57.3
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 6.7e-213 745.0 885 54.2
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 8.8e-213 744.6 858 53.8
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.5e-212 743.8 886 53.7
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 7.4e-212 741.5 876 54.7
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.7e-211 740.3 866 59.5
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 2.8e-211 739.6 840 55.5
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 4.8e-211 738.8 864 58.2
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 8.0e-206 721.5 914 52.0
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 5.7e-204 715.3 781 56.1
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.4e-202 709.9 845 52.2
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 7.0e-202 708.4 870 51.4
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.2e-201 707.6 786 55.0
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 2.0e-201 706.8 891 52.5
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 8.5e-200 701.4 894 52.7
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.5e-199 699.9 868 50.7
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 7.2e-199 698.4 870 50.8
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 3.6e-198 696.0 875 51.7
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 6.1e-198 695.3 870 50.7
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.3e-197 693.3 870 50.5
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 3.0e-197 693.0 897 50.8
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 2.6e-196 689.9 801 57.6
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 3.4e-196 689.5 873 51.0
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 7.5e-196 688.3 904 49.3
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.6e-193 680.6 871 52.4
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 2.0e-193 680.2 892 50.7
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 3.5e-193 679.5 909 52.5
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 6.5e-192 675.2 857 52.6
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 4.2e-191 672.5 875 51.5
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 5.2e-189 665.6 854 52.1
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 8.8e-189 664.8 875 48.7
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 1.2e-188 664.5 965 47.8
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 7.5e-188 661.8 888 51.7
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.8e-187 659.8 866 54.2
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 4.5e-185 652.5 782 54.1
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.3e-184 651.0 894 49.3
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 8.6e-184 648.3 893 48.4
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 4.0e-181 639.4 945 50.3
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 8.9e-181 638.3 889 46.7
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 3.2e-178 629.8 821 51.8
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.0e-176 624.8 855 48.3
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 2.3e-176 623.6 854 47.4
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 2.9e-176 623.2 890 52.5
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 3.6e-174 616.3 892 48.1
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 2.4e-170 603.6 873 46.6
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 4.1e-170 602.8 851 46.2
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 3.5e-169 599.7 860 49.8
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.3e-167 593.2 897 46.7
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.5e-164 584.3 744 53.5
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 4.9e-163 579.3 886 45.3
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 4.3e-159 566.2 863 45.4
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 1.4e-157 561.2 866 45.3
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 2.0e-156 557.4 384 79.9
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 6.4e-155 552.4 843 47.3
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 4.1e-154 549.7 900 43.8
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 6.0e-153 545.8 913 43.0
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 7.8e-153 545.4 886 46.0
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 1.5e-151 541.2 900 45.7
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.9e-151 540.8 915 45.6
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 4.3e-151 539.7 901 45.5
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 5.6e-151 539.3 881 42.9
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 1.1e-149 535.0 900 45.3
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 5.2e-149 532.7 769 48.6
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.2e-148 531.6 875 44.5
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 1.5e-148 531.2 894 42.4
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.2e-147 527.3 914 41.9
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 4.9e-147 526.2 836 43.8
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.6e-145 521.2 738 45.4
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.0e-144 518.5 874 43.8
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.3e-144 518.1 896 42.0
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 1.7e-144 517.7 890 41.8
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 1.1e-143 515.0 900 41.2
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 5.6e-143 512.7 886 44.0
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 5.6e-143 512.7 960 40.4
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 4.8e-142 509.6 861 43.7
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 4.4e-140 503.1 902 41.6
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 3.5e-137 493.4 839 43.0
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 1.6e-134 484.6 846 45.5
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 1.2e-132 478.4 876 40.5
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 4.8e-126 456.4 880 39.2
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 5.7e-119 433.0 738 44.0
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.4e-117 428.3 350 64.0
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 8.7e-112 409.1 469 51.6
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 3.7e-94 350.5 847 33.5
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 8.2e-94 349.4 533 46.3
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.3e-91 342.0 928 32.3
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 2.7e-89 334.3 439 52.4
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 3.6e-89 334.0 658 39.5
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-85 322.4 424 49.8
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 5.9e-84 316.6 891 33.9
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 3.6e-81 307.4 418 53.3
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 6.5e-75 286.6 347 48.4
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 1.2e-73 282.3 600 36.8
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.2e-70 271.6 222 60.8
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 6.3e-70 270.0 199 71.9
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 3.5e-60 237.7 568 32.2
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.3e-56 224.9 182 63.2
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 4.7e-49 200.7 373 38.3
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.1e-45 189.5 138 63.0
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 2.4e-45 188.3 361 34.6
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 8.6e-43 179.9 453 35.8
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 5.8e-39 167.2 151 61.6
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 3.8e-38 164.5 122 74.6
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 7.1e-37 160.2 121 72.7
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.1e-34 152.9 354 39.5
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-30 139.0 368 33.4
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 7.1e-29 133.7 247 35.6
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 7.1e-29 133.7 245 44.9
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 9.3e-29 133.3 368 33.4
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.9e-27 127.9 102 62.7
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.6e-26 124.0 98 60.2
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.6e-26 124.0 98 60.2
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 4.8e-25 120.9 654 28.3
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 1.5e-23 115.9 643 25.7
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 8.4e-22 110.2 89 76.4
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-16 92.8 265 35.8
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-16 91.7 148 40.5
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 7.6e-15 87.0 44 93.2
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 9.9e-15 86.7 120 43.3
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 4.9e-14 84.3 65 67.7
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.1e-13 83.2 156 37.2
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 7.1e-13 80.5 84 64.3
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.3e-13 80.1 96 49.0
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 9.3e-13 80.1 156 35.3
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.2e-12 79.7 156 35.3
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.2e-12 79.7 156 35.3
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.1e-12 79.0 131 38.9
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.1e-12 79.0 131 38.9
arahy.Tifrunner.gnm1.ann1.8SNI53 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-10 72.4 41 90.2
arahy.Tifrunner.gnm1.ann1.XCJ58K Arachis hypogaea HOM05D004001 ORTHO05D004559 5.6e-10 70.9 99 47.5
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 5.6e-10 70.9 289 31.5
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 6.2e-09 67.4 55 63.6
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 6.2e-09 67.4 55 63.6
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 4.0e-08 64.7 48 66.7
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 9.0e-08 63.5 59 62.7
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.2e-07 63.2 42 73.8
arahy.Tifrunner.gnm1.ann1.P6DNGG Arachis hypogaea HOM05D004001 ORTHO05D004559 2.2e-06 58.9 40 75.0
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 6.5e-06 57.4 114 38.6
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 6.5e-06 57.4 41 65.9


User provided reference genes

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