Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 2.5e-119 432.2 231 100.0
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 7.5e-79 297.7 229 72.1
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 4.5e-76 288.5 228 71.9
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 1.2e-63 247.3 235 64.3
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 4.3e-58 228.8 231 62.8
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 3.1e-56 222.6 238 60.9
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 6.8e-56 221.5 231 62.3
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 3.9e-51 205.7 226 56.2
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 5.6e-50 201.8 230 56.5
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 5.6e-50 201.8 234 56.8
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 4.7e-49 198.7 240 53.3
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 3.1e-48 196.1 243 51.4
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 4.0e-48 195.7 236 53.4
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 4.0e-48 195.7 239 51.0
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 5.8e-47 191.8 238 50.8
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 2.9e-46 189.5 235 50.2
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 3.8e-46 189.1 230 50.4
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 1.1e-45 187.6 234 50.9
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 5.4e-45 185.3 238 52.5
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 9.2e-45 184.5 242 48.3
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 2.7e-44 183.0 238 47.1
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 3.5e-44 182.6 237 49.8
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 3.9e-43 179.1 233 51.5
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 2.5e-42 176.4 232 50.4
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 1.6e-41 173.7 240 47.1
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 2.1e-41 173.3 236 51.7
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 3.6e-41 172.6 238 48.3
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 8.1e-41 171.4 232 48.7
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 1.8e-40 170.2 231 49.8
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 6.9e-40 168.3 244 48.8
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 6.9e-40 168.3 244 48.8
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 6.9e-40 168.3 244 48.8
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 1.2e-39 167.5 244 45.5
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 1.2e-39 167.5 240 45.4
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.6e-39 166.4 235 51.5
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 7.6e-39 164.9 231 51.5
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 9.9e-39 164.5 233 48.5
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 1.3e-38 164.1 236 49.2
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 1.7e-38 163.7 233 46.8
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.7e-38 163.7 231 47.2
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 2.2e-38 163.3 233 47.2
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 2.2e-38 163.3 233 46.8
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 2.9e-38 162.9 230 47.0
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 4.9e-38 162.2 231 46.8
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 6.4e-38 161.8 237 46.4
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 6.4e-38 161.8 243 46.5
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 6.4e-38 161.8 233 46.4
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 8.4e-38 161.4 233 45.9
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 8.4e-38 161.4 244 47.5
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 1.9e-37 160.2 229 47.2
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.4e-37 159.8 254 46.1
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 4.2e-37 159.1 237 46.8
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 9.3e-37 157.9 231 47.2
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 2.1e-36 156.8 234 47.4
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 2.7e-36 156.4 231 48.1
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 4.6e-36 155.6 234 44.9
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 6.0e-36 155.2 245 44.5
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 7.8e-36 154.8 233 47.6
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 1.0e-35 154.5 280 42.1
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 1.3e-35 154.1 228 45.6
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 1.1e-34 151.0 240 42.5
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 2.5e-34 149.8 234 45.3
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 3.3e-34 149.4 240 45.0
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 9.6e-34 147.9 235 44.7
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 6.2e-33 145.2 235 44.7
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 2.4e-32 143.3 228 42.5
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.4e-32 143.3 237 46.0
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 3.1e-32 142.9 236 43.2
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 3.1e-32 142.9 242 43.8
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 3.1e-32 142.9 234 45.3
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 4.0e-32 142.5 232 46.1
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 9.0e-32 141.4 230 42.6
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 1.2e-31 141.0 229 46.7
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 1.2e-31 141.0 225 46.2
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 1.5e-31 140.6 239 44.4
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 2.6e-31 139.8 233 45.9
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 5.8e-31 138.7 232 44.8
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 1.3e-30 137.5 232 45.3
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 2.2e-30 136.7 247 42.5
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 4.9e-30 135.6 233 44.6
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 6.4e-30 135.2 230 41.7
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 1.9e-29 133.7 227 39.6
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 1.2e-28 131.0 231 42.4
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 1.6e-28 130.6 234 44.4
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 2.7e-28 129.8 231 40.7
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 2.3e-27 126.7 219 43.4
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 6.7e-27 125.2 205 42.4
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 3.3e-26 122.9 222 42.8
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 3.3e-26 122.9 354 35.6
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 5.6e-26 122.1 199 44.2
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 5.6e-26 122.1 131 58.0
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 2.1e-25 120.2 225 40.0
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 6.9e-24 115.2 105 63.8
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 3.4e-23 112.8 246 35.4
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 4.5e-23 112.5 238 39.9
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 9.9e-23 111.3 190 43.2
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 4.9e-22 109.0 154 45.5
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 2.5e-21 106.7 111 57.7
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 4.2e-21 105.9 74 70.3
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 1.6e-20 104.0 109 58.7
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 3.9e-19 99.4 176 44.9
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 5.1e-19 99.0 108 51.9
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 6.7e-19 98.6 179 39.1
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 6.7e-19 98.6 73 67.1
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 1.5e-18 97.4 146 45.2
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 5.6e-18 95.5 188 39.4
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 5.6e-18 95.5 156 44.2
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 6.2e-17 92.0 133 46.6
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 8.2e-17 91.7 82 62.2
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 4.5e-15 85.9 76 57.9
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 6.5e-14 82.0 230 36.5
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 3.2e-13 79.7 235 31.9
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 3.2e-13 79.7 224 32.1
HPP92_020257 Vanilla planifolia HOM05D006684 ORTHO05D008443 5.5e-13 79.0 205 31.7
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 7.9e-12 75.1 233 30.0
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 3.9e-11 72.8 92 45.7
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 9.7e-10 68.2 240 30.8
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 1.8e-08 63.9 146 37.0
Hma1.2p1_0053F.1_g030890 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 2.6e-07 60.1 123 41.5


User provided reference genes

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