Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G264200 Glycine max HOM05D007580 ORTHO05D009620 2.1e-97 359.0 178 100.0
Glyma.18G227800 Glycine max HOM05D007580 ORTHO05D009620 1.4e-37 160.2 104 78.8
Medtr7g076270 Medicago truncatula HOM05D007580 ORTHO05D009620 3.4e-23 112.5 110 60.0
Lalb_Chr01g0021151 Lupinus albus HOM05D007580 ORTHO05D009620 1.7e-22 110.2 111 60.4
VMungo1383G0280 Vigna mungo HOM05D007580 ORTHO05D009620 5.5e-21 105.1 113 61.1
TPR.G37829 Trifolium pratense HOM05D007580 ORTHO05D009620 9.4e-21 104.4 110 57.3
QL08p050656 Quercus lobata HOM05D007580 ORTHO05D009620 2.1e-20 103.2 114 57.9
Ca_07865_v3 Cicer arietinum L. HOM05D007580 ORTHO05D009620 1.8e-19 100.1 72 69.4
Ciclev10023708m.g Citrus clementina HOM05D007580 ORTHO05D009620 3.0e-19 99.4 97 55.7
Sabra14G0055200 Salix brachista HOM05D007580 ORTHO05D009620 3.9e-19 99.0 113 54.9
Potri.014G077000 Populus trichocarpa HOM05D007580 ORTHO05D009620 6.7e-19 98.2 98 57.1
Gohir.A08G129400 Gossypium hirsutum HOM05D007580 ORTHO05D009620 2.0e-18 96.7 170 44.1
Phvul.008G070400 Phaseolus vulgaris HOM05D007580 ORTHO05D009620 3.3e-18 95.9 109 56.9
Psat0s1132g0080 Pisum sativum HOM05D007580 ORTHO05D009620 3.3e-18 95.9 111 49.5
Potri.002G153000 Populus trichocarpa HOM05D007580 ORTHO05D009620 3.3e-18 95.9 113 57.5
Prupe.2G154500 Prunus persica HOM05D007580 ORTHO05D009620 5.7e-18 95.1 113 50.4
Sabra02G0121300 Salix brachista HOM05D007580 ORTHO05D009620 9.7e-18 94.4 120 49.2
PGSC0003DMG400017056 Solanum tuberosum HOM05D007580 ORTHO05D009620 1.7e-17 93.6 99 51.5
Cfa004181 Carpinus fangiana HOM05D007580 ORTHO05D009620 2.8e-17 92.8 101 52.5
Solyc01g091790.2 Solanum lycopersicum HOM05D007580 ORTHO05D009620 2.8e-17 92.8 99 51.5
Gorai.004G156400 Gossypium raimondii HOM05D007580 ORTHO05D009620 3.7e-17 92.4 112 55.4
Haze_15227 Corylus avellana HOM05D007580 ORTHO05D009620 4.8e-17 92.0 111 49.5
Sed0005443 Sechium edule HOM05D007580 ORTHO05D009620 8.2e-17 91.3 108 57.4
Duzib133G0099 Durio zibethinus HOM05D007580 ORTHO05D009620 1.1e-16 90.9 107 55.1
Sopen01g037570 Solanum pennellii HOM05D007580 ORTHO05D009620 1.1e-16 90.9 111 48.6
TWI14G1086 Tripterygium wilfordii HOM05D007580 ORTHO05D009620 1.8e-16 90.1 107 49.5
RcHm_v2.0_Chr1g0352211 Rosa chinensis HOM05D007580 ORTHO05D009620 2.4e-16 89.7 102 53.9
MELO3C022528.2 Cucumis melo HOM05D007580 ORTHO05D009620 3.1e-16 89.4 155 43.9
CANSAT56G4452 Cannabis sativa HOM05D007580 ORTHO05D009620 4.1e-16 89.0 104 51.9
ClCG06G000100 Citrullus lanatus HOM05D007580 ORTHO05D009620 4.1e-16 89.0 104 53.8
MD07G1128600 Malus domestica HOM05D007580 ORTHO05D009620 4.1e-16 89.0 112 50.0
Gohir.D08G150700 Gossypium hirsutum HOM05D007580 ORTHO05D009620 5.3e-16 88.6 112 54.5
Manes.05G040200 Manihot esculenta HOM05D007580 ORTHO05D009620 5.3e-16 88.6 122 50.8
Thecc.01G368700 Theobroma cacao HOM05D007580 ORTHO05D009620 5.3e-16 88.6 190 38.9
Duzib138G0841 Durio zibethinus HOM05D007580 ORTHO05D009620 2.6e-15 86.3 189 36.5
Migut.B01687 Erythranthe guttata HOM05D007580 ORTHO05D009620 3.4e-15 85.9 114 44.7
FAN06G3292 Fragaria x ananassa HOM05D007580 ORTHO05D009620 3.4e-15 85.9 102 52.9
FAN06G5062 Fragaria x ananassa HOM05D007580 ORTHO05D009620 3.4e-15 85.9 102 52.9
CsaV3_6G005830 Cucumis sativus L. HOM05D007580 ORTHO05D009620 4.5e-15 85.5 97 56.7
Hma1.2p1_0398F.1_g143830 Hydrangea macrophylla HOM05D007580 ORTHO05D009620 5.9e-15 85.1 130 43.8
FAN03G2022 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.0e-14 84.3 102 53.9
FAN10G2444 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.3e-14 84.0 102 52.0
COL.COLO4_12626 Corchorus olitorius HOM05D007580 ORTHO05D009620 2.9e-14 82.8 113 48.7
Lsat_1_v5_gn_7_8361 Lactuca sativa HOM05D007580 ORTHO05D009620 3.8e-14 82.4 111 44.1
Lsat_1_v5_gn_7_8421 Lactuca sativa HOM05D007580 ORTHO05D009620 3.8e-14 82.4 108 44.4
Manes.01G262404 Manihot esculenta HOM05D007580 ORTHO05D009620 5.0e-14 82.0 144 41.7
Nitab4.5_0004550g0100 Nicotiana tabacum HOM05D007580 ORTHO05D009620 5.0e-14 82.0 106 50.0
Peaxi162Scf00021g00055 Petunia axillaris HOM05D007580 ORTHO05D009620 8.5e-14 81.3 88 47.7
FAN01G0874 Fragaria x ananassa HOM05D007580 ORTHO05D009620 1.1e-13 80.9 102 52.0
PGR031G3829 Punica granatum HOM05D007580 ORTHO05D009620 1.9e-13 80.1 86 48.8
Oeu024417.1 Olea europaea HOM05D007580 ORTHO05D009620 3.2e-13 79.3 93 49.5
CARHR000490 Cardamine hirsuta HOM05D007580 ORTHO05D009620 4.2e-13 79.0 108 48.1
Lj1g0023268 Lotus japonicus HOM05D007580 ORTHO05D009620 7.2e-13 78.2 105 45.7
AT1G01840 Arabidopsis thaliana HOM05D007580 ORTHO05D009620 1.6e-12 77.0 108 48.1
Carub.0001s0037 Capsella rubella HOM05D007580 ORTHO05D009620 2.7e-12 76.3 107 46.7
Thhalv10009990m.g Eutrema salsugineum HOM05D007580 ORTHO05D009620 4.7e-12 75.5 103 45.6
TAR375G0300 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.0e-11 74.3 103 40.8
CiPaw.01G053500 Carya illinoinensis HOM05D007580 ORTHO05D009620 1.4e-11 73.9 111 45.9
Actinidia33444 Actinidia chinensis HOM05D007580 ORTHO05D009620 1.8e-11 73.6 77 50.6
BcaB03g13622 Brassica carinata HOM05D007580 ORTHO05D009620 2.3e-11 73.2 111 46.8
BolC5t28812H Brassica oleracea HOM05D007580 ORTHO05D009620 2.3e-11 73.2 111 46.8
Sp1g00440 Schrenkiella parvula HOM05D007580 ORTHO05D009620 3.0e-11 72.8 112 47.3
GSVIVG01027528001 Vitis vinifera HOM05D007580 ORTHO05D009620 3.0e-11 72.8 100 46.0
AL1G10480 Arabidopsis lyrata HOM05D007580 ORTHO05D009620 6.7e-11 71.6 87 50.6
Sc23g0003300 Simmondsia chinensis HOM05D007580 ORTHO05D009620 1.1e-10 70.9 97 45.4
TAR003G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.1e-10 70.9 100 40.0
Aqoxy7G00453 Aquilegia oxysepala HOM05D007580 ORTHO05D009620 1.5e-10 70.5 147 34.7
CSS0034624 Camellia sinensis var. sinensis HOM05D007580 ORTHO05D009620 1.5e-10 70.5 75 49.3
TAR656G0002 Trochodendron aralioides HOM05D007580 ORTHO05D009620 1.5e-10 70.5 100 40.0
BraA10t42299Z Brassica rapa HOM05D007580 ORTHO05D009620 3.3e-10 69.3 111 45.0
A10p00190 Brassica napus HOM05D007580 ORTHO05D009620 4.4e-10 68.9 111 45.0
DCAR_006906 Daucus carota HOM05D007580 ORTHO05D009620 9.7e-10 67.8 107 39.3
vmacro20972 Vaccinium macrocarpon HOM05D007580 ORTHO05D009620 1.7e-09 67.0 155 34.8
Nitab4.5_0010430g0050 Nicotiana tabacum HOM05D007580 ORTHO05D009620 2.8e-09 66.2 77 44.2
Nn1g01349 Nelumbo nucifera HOM05D007580 ORTHO05D009620 4.8e-09 65.5 142 37.3
Rhsim01G0155700 Rhododendron simsii HOM05D007580 ORTHO05D009620 8.2e-09 64.7 89 46.1
ECA236G4638 Erigeron canadensis HOM05D007580 ORTHO05D009620 4.1e-08 62.4 93 44.1
Cpa.g.sc18.198 Carica papaya HOM05D007580 ORTHO05D009620 5.3e-08 62.0 101 43.6
Aa31LG1G11200 Aethionema arabicum HOM05D007580 ORTHO05D009620 7.0e-08 61.6 107 42.1
SGA_v2.0_scaffold95G28871 Striga asiatica HOM05D007580 ORTHO05D009620 7.0e-08 61.6 85 43.5
AUR62033366 Chenopodium quinoa HOM05D007580 ORTHO05D009620 1.2e-07 60.8 108 39.8
THA.LOC104814091 Tarenaya hassleriana HOM05D007580 ORTHO05D009620 3.5e-07 59.3 90 43.3
SalBow3G0911 Salvia bowleyana HOM05D007580 ORTHO05D009620 4.5e-07 58.9 73 45.2
PSO782G0900 Papaver somniferum HOM05D007580 ORTHO05D009620 7.7e-07 58.2 166 30.1
PSO782G1514 Papaver somniferum HOM05D007580 ORTHO05D009620 1.0e-06 57.8 167 29.9
PSO478G4117 Papaver somniferum HOM05D007580 ORTHO05D009620 2.9e-06 56.2 172 29.1
CiPaw.01G052900 Carya illinoinensis HOM05D007580 ORTHO05D009620 5.0e-06 55.5 75 50.7
C05p00230 Brassica napus HOM05D007580 ORTHO05D009620 6.5e-06 55.1 111 39.6


User provided reference genes

Program Settings