Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 3.5e-68 261.5 135 100.0
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 1.1e-61 240.0 135 92.6
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 1.4e-53 213.0 135 83.7
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 3.6e-49 198.4 135 78.5
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 4.4e-47 191.4 138 74.6
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 1.2e-44 183.3 144 70.1
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 3.3e-42 175.3 143 67.1
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 2.1e-41 172.6 131 69.5
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 1.2e-39 166.8 131 69.5
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 2.1e-36 156.0 167 55.1
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 5.1e-35 151.4 132 63.6
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 3.2e-29 132.1 135 57.8
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 1.1e-26 123.6 133 55.6
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 2.5e-26 122.5 136 52.2
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 9.6e-26 120.6 150 50.0
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 9.6e-26 120.6 133 54.1
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 1.6e-25 119.8 136 52.2
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 1.6e-25 119.8 140 50.7
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 1.6e-25 119.8 128 53.9
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 1.1e-24 117.1 140 50.0
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 4.0e-24 115.2 151 49.0
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 6.9e-24 114.4 148 47.3
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 6.9e-24 114.4 136 48.5
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 6.9e-24 114.4 128 50.8
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 9.0e-24 114.0 135 49.6
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.2e-23 113.6 134 51.5
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 1.2e-23 113.6 136 52.2
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 1.2e-23 113.6 148 46.6
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 1.5e-23 113.2 138 50.7
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 2.0e-23 112.8 133 50.4
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 3.4e-23 112.1 151 46.4
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.5e-23 111.7 133 48.9
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 5.8e-23 111.3 152 44.1
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 7.6e-23 110.9 134 53.0
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 9.9e-23 110.5 137 48.9
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 2.2e-22 109.4 133 48.9
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 2.2e-22 109.4 124 46.8
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 2.9e-22 109.0 127 50.4
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 4.9e-22 108.2 116 55.2
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 4.9e-22 108.2 144 45.1
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 8.4e-22 107.5 140 47.9
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 1.1e-21 107.1 181 40.3
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 1.1e-21 107.1 123 49.6
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.4e-21 106.7 133 48.1
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 1.4e-21 106.7 127 50.4
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 1.4e-21 106.7 132 46.2
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 1.4e-21 106.7 139 48.2
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 1.9e-21 106.3 144 46.5
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 1.9e-21 106.3 142 49.3
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 2.4e-21 105.9 148 44.6
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 4.2e-21 105.1 167 43.7
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 9.3e-21 104.0 134 47.8
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 9.3e-21 104.0 136 47.1
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 1.6e-20 103.2 156 42.9
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 1.6e-20 103.2 145 44.1
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 3.5e-20 102.1 131 47.3
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 6.0e-20 101.3 142 41.5
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 6.0e-20 101.3 126 52.4
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 1.3e-19 100.1 143 42.7
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 1.8e-19 99.8 145 42.8
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 2.3e-19 99.4 129 47.3
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 3.0e-19 99.0 140 42.9
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 6.7e-19 97.8 140 42.9
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 6.7e-19 97.8 142 47.9
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 1.1e-18 97.1 141 43.3
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 1.5e-18 96.7 116 49.1
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 4.3e-18 95.1 128 46.9
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 7.4e-18 94.4 136 43.4
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 7.4e-18 94.4 135 45.9
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 9.6e-18 94.0 140 42.1
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 2.1e-17 92.8 129 46.5
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.8e-17 92.4 140 41.4
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 2.8e-17 92.4 133 43.6
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.6e-17 92.0 140 41.4
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 3.6e-17 92.0 143 41.3
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 4.8e-17 91.7 135 43.0
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 4.8e-17 91.7 138 42.8
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 8.1e-17 90.9 135 43.0
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 8.1e-17 90.9 143 41.3
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 8.1e-17 90.9 116 47.4
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 1.4e-16 90.1 114 47.4
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 1.4e-16 90.1 146 43.2
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 2.4e-16 89.4 142 42.3
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 2.4e-16 89.4 149 40.3
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 2.6e-15 85.9 146 37.0
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 5.8e-15 84.7 142 39.4
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 1.3e-14 83.6 125 44.0
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 1.3e-14 83.6 112 46.4
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 1.7e-14 83.2 115 42.6
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 4.9e-14 81.6 112 44.6
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 6.4e-14 81.3 131 36.6
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 6.4e-14 81.3 131 36.6
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 6.4e-14 81.3 118 44.9
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 8.4e-14 80.9 111 46.8
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 8.4e-14 80.9 128 36.7
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 8.4e-14 80.9 128 36.7
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 8.4e-14 80.9 128 36.7
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 2.4e-13 79.3 146 37.0
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 1.2e-12 77.0 140 37.9
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 2.1e-12 76.3 225 31.1
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 2.7e-12 75.9 118 40.7
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 4.6e-12 75.1 144 36.8
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 7.9e-12 74.3 139 36.7
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.0e-11 73.9 124 39.5
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 3.0e-11 72.4 113 40.7
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 5.1e-11 71.6 128 35.2
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 6.7e-11 71.2 204 30.4
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 1.5e-10 70.1 156 34.0
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 1.6e-09 66.6 129 31.8
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.1e-08 63.9 138 31.9
CDE02G4271 Ceratophyllum demersum HOM05D000667 ORTHO05D009057 5.3e-08 61.6 59 55.9
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 1.2e-07 60.5 127 34.6
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 2.6e-07 59.3 142 33.1
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 5.8e-07 58.2 121 28.1
Os04g0558500 Oryza sativa ssp. japonica HOM05D006065 ORTHO05D007672 3.8e-06 55.5 117 33.3
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 3.8e-06 55.5 100 40.0


User provided reference genes

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