Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 6.0e-180 634.0 316 100.0
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.1e-165 586.6 316 93.0
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 3.7e-153 545.0 316 87.3
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 2.4e-152 542.3 316 86.1
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 5.0e-134 481.5 314 75.8
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 1.6e-132 476.5 314 76.4
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 2.1e-124 449.5 319 72.4
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 1.4e-123 446.8 316 72.5
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 2.6e-122 442.6 316 73.7
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 7.5e-122 441.0 316 73.4
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 2.9e-113 412.5 282 74.8
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 3.7e-113 412.1 317 66.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.5e-98 363.6 313 62.9
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 9.9e-98 360.9 317 63.7
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 2.7e-95 352.8 318 58.5
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 1.1e-93 347.4 319 58.9
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 4.3e-93 345.5 317 57.4
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 5.2e-91 338.6 316 56.6
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 9.9e-90 334.3 316 55.4
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 2.2e-89 333.2 322 59.0
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 3.8e-89 332.4 310 57.4
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.9e-89 332.0 283 62.5
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 1.1e-88 330.9 318 56.0
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.4e-88 329.7 320 55.0
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 9.3e-88 327.8 315 58.1
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.2e-87 327.4 283 61.5
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 4.6e-87 325.5 318 57.2
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.7e-86 323.6 318 56.6
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 2.3e-86 323.2 318 54.7
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.3e-86 323.2 319 54.5
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 3.3e-85 319.3 318 54.1
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.1e-84 316.6 322 55.0
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 2.8e-84 316.2 284 60.9
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 2.8e-84 316.2 320 55.6
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.1e-83 314.3 318 56.0
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.8e-83 313.5 320 55.6
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.1e-83 312.8 307 54.7
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 6.9e-83 311.6 321 51.4
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 1.5e-82 310.5 318 54.7
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.4e-82 308.9 316 53.5
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 5.8e-82 308.5 318 54.1
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.3e-81 307.4 316 53.2
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.7e-81 307.0 318 53.5
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.9e-81 306.2 316 52.8
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 4.9e-81 305.4 320 54.4
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 4.9e-81 305.4 320 54.7
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 8.4e-81 304.7 316 52.8
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-80 303.5 317 52.4
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 7.1e-80 301.6 318 53.1
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 2.1e-79 300.1 252 64.3
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 4.6e-79 298.9 323 51.4
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 4.6e-79 298.9 312 54.2
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.0e-78 297.7 316 52.2
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.3e-78 297.4 284 54.9
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.7e-78 297.0 333 51.1
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 3.9e-78 295.8 319 53.0
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 4.3e-77 292.4 337 50.1
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.3e-76 290.8 317 52.7
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 2.1e-76 290.0 315 54.3
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 3.6e-76 289.3 313 53.7
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 3.6e-76 289.3 316 52.5
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 1.4e-75 287.3 311 54.0
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.4e-75 287.3 320 51.6
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 1.8e-75 287.0 331 50.5
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.2e-74 284.3 316 48.7
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 1.3e-73 280.8 283 53.4
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 2.2e-73 280.0 319 48.9
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 8.4e-73 278.1 337 48.7
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 4.2e-72 275.8 321 49.5
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 9.3e-72 274.6 320 49.1
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 9.3e-72 274.6 314 50.0
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 1.2e-71 274.2 319 51.4
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.2e-71 274.2 319 48.0
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 3.5e-71 272.7 315 52.4
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 5.1e-70 268.9 284 51.8
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 1.3e-68 264.2 320 48.8
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 1.4e-67 260.8 314 50.6
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 2.4e-67 260.0 316 49.1
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 2.4e-67 260.0 313 48.2
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.0e-66 256.9 284 50.4
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 4.5e-66 255.8 309 48.2
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.8e-65 252.7 317 45.4
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 8.4e-65 251.5 321 47.4
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.4e-64 250.8 316 47.5
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.5e-64 250.0 320 46.6
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 9.3e-64 248.1 318 45.9
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 1.2e-63 247.7 318 44.0
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 5.1e-62 242.3 313 45.4
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 8.7e-62 241.5 316 46.5
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.1e-61 241.1 315 45.4
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 2.5e-61 240.0 317 43.2
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 3.7e-60 236.1 318 46.9
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 4.8e-60 235.7 300 46.7
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 6.2e-60 235.3 310 45.5
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 1.1e-59 234.6 312 44.9
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 1.8e-59 233.8 319 43.6
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 4.1e-59 232.6 302 45.4
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 2.0e-58 230.3 276 47.5
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 7.6e-58 228.4 339 42.8
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 7.6e-58 228.4 325 44.6
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 7.6e-58 228.4 317 42.9
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 2.2e-57 226.9 311 43.1
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 2.2e-57 226.9 337 41.8
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 8.4e-57 224.9 317 42.6
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.1e-56 224.6 281 48.0
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.5e-53 214.2 283 45.9
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 5.7e-53 212.2 304 43.4
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 1.3e-52 211.1 335 42.1
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.6e-52 210.7 280 44.6
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 3.7e-52 209.5 316 38.6
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 5.3e-51 205.7 317 42.0
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 5.3e-51 205.7 317 43.8
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 6.9e-51 205.3 316 43.7
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 9.0e-51 204.9 308 43.5
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 1.2e-50 204.5 306 43.5
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 1.3e-49 201.1 326 42.0
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.7e-49 200.7 325 40.0
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 3.8e-49 199.5 323 43.3
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 5.0e-49 199.1 285 42.5
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 6.5e-49 198.7 314 42.4
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 5.5e-48 195.7 284 40.5
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 7.2e-48 195.3 320 42.5
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 9.4e-48 194.9 316 42.4
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 2.1e-47 193.7 316 40.5
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.7e-47 193.4 315 40.6
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 3.6e-47 193.0 311 43.4
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 1.4e-46 191.0 309 40.8
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 3.9e-46 189.5 318 41.8
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 3.9e-46 189.5 318 37.1
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 2.0e-45 187.2 313 43.1
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.3e-45 186.4 318 40.9
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 9.7e-45 184.9 319 42.3
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 1.3e-44 184.5 312 39.1
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 2.2e-44 183.7 277 42.2
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 4.8e-44 182.6 318 41.2
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 4.8e-44 182.6 281 42.0
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 8.2e-44 181.8 313 41.2
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 6.9e-43 178.7 325 40.3
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 6.9e-43 178.7 325 40.3
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 1.0e-41 174.9 244 41.8
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.6e-39 167.5 319 36.4
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.1e-39 167.2 194 47.4
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 2.6e-37 160.2 323 39.3
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 2.6e-37 160.2 314 35.4
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 5.7e-37 159.1 329 38.0
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 2.8e-36 156.8 322 38.8
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 8.2e-36 155.2 323 39.0
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 1.4e-35 154.5 314 36.6
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 1.2e-34 151.4 288 36.8
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 5.9e-34 149.1 193 44.0
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 1.0e-33 148.3 318 36.2
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 1.0e-33 148.3 318 36.2
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.1e-32 144.8 314 33.1
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 1.5e-32 144.4 323 37.5
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 1.5e-32 144.4 323 37.5
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 9.4e-32 141.7 298 37.2
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.2e-31 141.4 329 33.1
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.5e-29 134.4 313 32.9
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 7.4e-29 132.1 319 33.5
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 5.9e-26 122.5 257 33.1
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 2.2e-25 120.6 377 31.6
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.5e-24 117.1 107 57.0
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 4.2e-24 116.3 279 34.8
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.5e-21 107.8 294 31.6
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 2.0e-21 107.5 296 29.1
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 5.7e-21 105.9 303 27.1
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 5.7e-21 105.9 279 33.7
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 3.5e-18 96.7 314 29.6
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 1.3e-17 94.7 248 29.0
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 2.7e-15 87.0 310 24.2
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 8.0e-15 85.5 274 25.9
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 2.3e-14 84.0 94 47.9
Oeu051126.2 Olea europaea HOM05D001925 ORTHO05D004257 1.1e-11 75.1 147 37.4
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 5.4e-11 72.8 132 40.9
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 7.0e-11 72.4 63 60.3
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 1.2e-10 71.6 248 24.2
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 3.5e-10 70.1 65 58.5
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 3.5e-10 70.1 65 58.5
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 1.0e-09 68.6 248 23.8
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.8e-09 66.6 308 24.4
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 8.6e-09 65.5 89 42.7
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.9e-08 64.3 89 42.7
Lj6C572T1 Lonicera japonica HOM05D001925 ORTHO05D004257 5.6e-08 62.8 45 71.1
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.0e-06 58.5 87 35.6
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 5.2e-06 56.2 119 31.9
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 6.8e-06 55.8 149 29.5
Lj6P578T28 Lonicera japonica HOM05D001925 ORTHO05D004257 8.9e-06 55.5 151 28.5


User provided reference genes

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