Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 5.0e-87 324.3 156 100.0
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 3.8e-74 281.6 138 98.6
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 4.2e-65 251.5 127 95.3
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 2.7e-64 248.8 128 94.5
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 3.5e-64 248.4 128 90.6
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 7.3e-62 240.7 128 89.1
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 3.6e-61 238.4 127 88.2
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 3.6e-61 238.4 127 88.2
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 3.1e-60 235.3 127 87.4
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.3e-60 234.6 127 87.4
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 5.3e-60 234.6 127 86.6
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 1.5e-59 233.0 133 82.0
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 7.6e-59 230.7 127 84.3
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 9.9e-59 230.3 127 85.0
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.1e-57 226.9 127 83.5
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 4.2e-57 224.9 127 83.5
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 5.4e-57 224.6 127 85.0
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 9.3e-57 223.8 128 81.2
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 9.3e-57 223.8 128 81.2
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 9.3e-57 223.8 128 81.2
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 9.3e-57 223.8 127 85.0
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 1.6e-56 223.0 127 79.5
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.6e-56 223.0 127 80.3
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 2.1e-56 222.6 128 80.5
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 2.1e-56 222.6 133 78.2
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 2.1e-56 222.6 136 76.5
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.7e-56 222.2 127 80.3
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 2.7e-56 222.2 127 80.3
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 3.5e-56 221.9 128 80.5
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 3.5e-56 221.9 136 76.5
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 6.0e-56 221.1 127 79.5
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 6.0e-56 221.1 127 81.1
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 7.9e-56 220.7 127 81.1
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 1.8e-55 219.5 136 74.3
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 5.1e-55 218.0 127 79.5
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 6.7e-55 217.6 130 77.7
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.1e-54 216.9 127 78.7
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.5e-54 216.5 127 78.7
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.5e-54 216.5 127 78.7
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 1.5e-54 216.5 137 74.5
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.5e-54 216.5 127 77.2
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.5e-54 215.7 138 75.4
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 2.5e-54 215.7 127 78.0
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 3.3e-54 215.3 136 72.8
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 3.3e-54 215.3 127 79.5
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 4.3e-54 214.9 127 78.0
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 4.3e-54 214.9 127 78.7
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 7.4e-54 214.2 136 72.1
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 7.4e-54 214.2 136 73.5
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 7.4e-54 214.2 127 74.8
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 9.6e-54 213.8 136 72.1
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 9.6e-54 213.8 133 72.9
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.3e-53 213.4 127 76.4
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 1.3e-53 213.4 127 77.2
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.3e-53 213.4 133 72.9
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 1.6e-53 213.0 136 71.3
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.6e-53 213.0 133 75.2
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 2.8e-53 212.2 136 72.1
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 3.7e-53 211.8 138 73.9
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 3.7e-53 211.8 129 76.0
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 3.7e-53 211.8 135 73.3
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 3.7e-53 211.8 136 70.6
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 3.7e-53 211.8 127 78.0
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 6.2e-53 211.1 128 72.7
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 6.2e-53 211.1 138 73.2
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 6.2e-53 211.1 136 75.0
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 8.1e-53 210.7 128 78.1
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 8.1e-53 210.7 136 71.3
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 8.1e-53 210.7 133 72.9
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.1e-52 210.3 139 74.1
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 1.1e-52 210.3 136 69.9
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 1.1e-52 210.3 136 72.8
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.1e-52 210.3 127 75.6
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 1.1e-52 210.3 134 73.1
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 1.4e-52 209.9 127 74.8
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-52 209.9 127 75.6
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-52 209.9 127 75.6
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 1.8e-52 209.5 136 69.1
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 1.8e-52 209.5 138 71.7
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-52 209.5 127 75.6
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.8e-52 209.5 127 75.6
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.8e-52 209.5 127 75.6
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 3.1e-52 208.8 137 70.1
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 4.0e-52 208.4 129 74.4
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 5.3e-52 208.0 127 74.0
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.2e-51 206.8 133 72.9
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.2e-51 206.8 136 69.1
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 1.5e-51 206.5 129 73.6
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 1.5e-51 206.5 127 74.0
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 2.6e-51 205.7 127 74.0
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.6e-51 205.7 127 74.0
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.6e-51 205.7 127 74.0
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 4.5e-51 204.9 127 74.0
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.5e-51 204.9 127 74.0
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.5e-51 204.9 127 74.0
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.8e-51 204.5 127 73.2
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.6e-51 204.1 127 73.2
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.3e-50 203.4 136 71.3
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 1.7e-50 203.0 127 74.0
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 1.7e-50 203.0 138 71.7
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.7e-50 203.0 134 70.9
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 2.2e-50 202.6 124 75.0
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 3.8e-50 201.8 134 70.9
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 8.4e-50 200.7 134 70.1
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 8.4e-50 200.7 134 70.1
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 8.4e-50 200.7 133 68.4
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 1.1e-49 200.3 134 70.1
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 3.2e-49 198.7 126 67.5
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 5.5e-49 198.0 126 67.5
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 2.7e-48 195.7 141 65.2
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 3.5e-48 195.3 132 65.9
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 1.3e-47 193.4 165 61.2
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 6.7e-47 191.0 127 70.1
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 8.7e-47 190.7 127 70.9
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.9e-46 189.5 129 67.4
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.6e-46 188.0 127 66.9
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 9.6e-46 187.2 128 68.0
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.6e-45 186.4 128 67.2
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.6e-45 186.4 127 66.9
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.6e-45 186.4 138 65.9
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 2.8e-45 185.7 131 66.4
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 1.1e-44 183.7 127 70.9
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.4e-44 183.3 118 72.9
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 1.4e-44 183.3 127 70.9
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.4e-44 182.6 128 64.8
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.0e-44 180.6 126 65.9
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.2e-43 180.3 135 61.5
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-43 180.3 135 61.5
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-43 180.3 135 61.5
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-43 179.5 127 66.1
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-43 179.5 127 66.1
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 5.8e-43 177.9 127 68.5
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-42 177.2 133 64.7
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.7e-42 176.4 107 78.5
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 1.7e-42 176.4 132 60.6
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 2.9e-42 175.6 127 64.6
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 2.9e-42 175.6 105 78.1
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 3.8e-42 175.3 127 65.4
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 4.9e-42 174.9 105 79.0
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 6.5e-42 174.5 102 81.4
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 6.5e-42 174.5 105 78.1
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-41 173.3 133 59.4
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 2.5e-41 172.6 136 61.0
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 4.2e-41 171.8 110 76.4
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.5e-41 171.4 105 77.1
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.5e-41 171.4 129 62.0
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 7.1e-41 171.0 104 76.9
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 1.2e-40 170.2 133 58.6
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 1.5e-38 163.3 136 61.8
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 1.9e-38 162.9 126 61.1
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 3.7e-37 158.7 133 57.9
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 8.2e-37 157.5 127 63.0
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 1.2e-35 153.7 136 54.4
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 4.5e-35 151.8 151 50.3
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 4.2e-33 145.2 88 77.3
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 2.5e-30 136.0 82 75.6
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 7.2e-25 117.9 137 48.2
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.8e-23 113.2 125 44.8
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 1.5e-22 110.2 65 81.5
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 2.6e-19 99.4 124 42.7
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 5.9e-19 98.2 115 49.6
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.3e-15 86.3 135 37.8
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 1.8e-12 76.6 54 68.5
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 7.0e-12 74.7 81 48.1
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 4.2e-09 65.5 65 47.7
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.6e-08 63.5 57 56.1
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 2.7e-08 62.8 57 54.4
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 3.6e-08 62.4 61 49.2
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 1.8e-07 60.1 40 55.0
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 8.8e-07 57.8 52 53.8
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 8.8e-07 57.8 45 55.6
AUR62040596 Chenopodium quinoa HOM05D003837 ORTHO05D009742 9.7e-06 54.3 31 83.9


User provided reference genes

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