Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 2242.6 1122 100.0
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 2196.4 1122 97.9
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 2136.7 1124 94.3
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 2087.4 1124 92.4
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 2058.5 1125 91.2
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 2058.1 1124 89.9
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 2056.6 1127 91.2
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 2043.1 1121 90.9
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 2040.8 1121 90.8
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 2008.8 1071 93.7
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1915.6 1124 84.5
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1908.6 1121 83.9
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1907.9 1122 84.1
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1894.4 1130 83.0
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1894.0 1124 83.1
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1892.9 1124 83.2
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1890.9 1127 83.0
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1890.2 1121 83.1
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1887.8 1124 82.8
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1885.2 1124 83.1
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1880.1 1124 82.7
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1878.6 1125 84.1
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1877.4 1122 82.9
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1872.8 1128 82.4
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1865.1 1125 82.8
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1864.4 1139 81.7
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1860.9 1122 82.8
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1853.2 1125 81.8
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1850.9 1124 82.0
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1848.6 1139 81.1
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1843.6 1124 81.3
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1842.0 1123 82.1
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1841.2 1095 84.0
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1833.5 1185 78.7
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1832.4 1119 80.6
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1827.0 1124 80.8
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1826.2 1126 81.7
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1818.1 1127 80.2
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1817.4 1121 80.1
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1815.8 1118 80.6
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1810.4 1126 80.2
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1808.9 1125 79.9
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1808.9 1129 79.1
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1807.7 1151 78.3
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1805.4 1126 79.4
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1804.6 1129 78.8
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1799.6 1121 80.3
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1799.3 1124 80.2
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1794.6 1121 80.2
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1794.2 1120 78.9
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1791.2 1187 75.9
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1788.1 1125 79.6
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1786.2 1126 79.5
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1786.2 1122 79.5
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1778.1 1120 78.7
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1777.7 950 92.8
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1777.3 1077 82.5
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1773.8 1125 79.2
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1772.3 1123 78.2
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1766.5 1126 77.6
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1755.7 1126 77.8
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1755.0 1162 76.5
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1743.8 1196 74.2
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1743.4 1116 77.6
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1740.3 1117 77.5
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1738.8 1123 76.5
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1732.6 1035 82.8
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1726.8 1121 76.3
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1722.6 1079 79.0
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1717.2 1247 71.9
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1715.3 1115 76.6
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1711.8 1121 75.6
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1711.4 1116 76.6
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1705.6 1121 75.4
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1699.5 1121 75.2
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1699.5 1121 75.6
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1687.5 1124 76.2
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1685.6 1121 75.3
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1685.6 1121 75.3
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1682.9 1122 74.7
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1673.7 1318 67.5
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1669.1 1121 74.8
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1668.7 1121 74.8
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1666.4 1155 74.8
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1611.3 1124 72.4
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1606.7 1141 71.3
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1600.9 1014 81.2
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1592.8 1154 69.8
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1588.2 1162 71.0
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1566.2 1117 71.4
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1543.9 1163 69.3
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1542.3 1128 68.7
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1533.5 1126 68.5
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1529.6 1128 68.1
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1497.3 1110 69.6
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1449.5 867 83.0
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1438.3 842 84.7
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1434.9 838 84.7
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1401.3 860 79.2
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1301.6 1127 61.3
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1260.4 823 75.2
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1246.1 782 78.8
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1190.6 682 86.1
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1129.8 1139 52.2
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 0.0e+00 1086.2 1522 44.0
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.7e-309 1066.2 1120 50.8
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 1.9e-292 1009.6 1148 48.3
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 9.0e-279 964.1 1147 45.7
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.0e-266 922.5 530 87.7
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 2.4e-263 912.9 670 70.1
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.6e-262 909.4 1382 38.3
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.7e-261 906.7 675 66.5
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 8.2e-256 887.9 584 78.4
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.6e-246 857.1 738 60.7
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 8.0e-227 791.6 614 68.1
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 1.1e-204 718.0 451 77.4
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.4e-199 701.0 430 82.3
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 7.1e-183 645.6 420 71.9
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.9e-180 637.5 590 53.6
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 3.9e-149 533.5 312 84.9
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.1e-148 531.9 451 61.4
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 4.1e-138 496.9 372 72.6
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 1.7e-123 448.4 332 74.4
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 4.7e-102 377.1 1213 28.7
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 4.1e-90 337.4 770 32.1
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 2.8e-86 324.7 1454 23.1
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 7.1e-82 310.1 314 53.8
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.3e-79 300.8 232 70.3
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.4e-74 285.8 179 77.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 8.7e-72 276.6 198 76.8
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 4.2e-66 257.7 186 68.3
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 9.3e-66 256.5 170 70.6
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 5.8e-60 237.3 206 57.8
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 7.6e-60 236.9 294 46.6
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 7.1e-58 230.3 212 58.0
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.8e-54 218.4 316 38.6
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.7e-54 218.0 592 32.8
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 2.3e-48 198.7 212 58.0
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 2.2e-46 192.2 212 55.2
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.7e-43 182.6 327 42.2
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.9e-42 179.1 269 40.5
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 6.7e-40 170.6 169 53.8
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 5.3e-37 161.0 710 24.2
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 2.9e-35 155.2 183 51.9
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 9.4e-34 150.2 86 84.9
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 5.2e-32 144.4 87 81.6
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.2e-28 133.3 87 75.9
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 7.2e-26 124.0 85 63.5
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.0e-24 120.2 65 86.2
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.8e-24 119.4 166 44.0
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.6e-23 115.5 138 52.2
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.0e-20 105.9 73 72.6
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 2.0e-20 105.9 69 76.8
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 2.2e-19 102.4 161 39.1
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 3.2e-18 98.6 58 81.0
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.8e-16 92.8 67 62.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 2.3e-16 92.4 60 71.7
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 6.8e-16 90.9 95 53.7
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 1.7e-14 86.3 45 84.4
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.7e-14 86.3 64 65.6
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.7e-14 85.1 80 58.8
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 4.5e-12 78.2 47 78.7
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 4.5e-12 78.2 56 67.9
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.3e-11 76.6 55 63.6
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 3.2e-10 72.0 71 54.9
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 4.2e-10 71.6 49 65.3
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.6e-07 62.4 43 60.5
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 5.7e-07 61.2 34 70.6


User provided reference genes

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