Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G252532 Glycine max HOM05D008013 ORTHO05D010149 2.7e-43 178.3 93 100.0
Glyma.18G240151 Glycine max HOM05D008013 ORTHO05D010149 3.3e-41 171.4 93 93.5
Lj1g0002079 Lotus japonicus HOM05D008013 ORTHO05D010149 4.1e-36 154.5 84 95.2
Phvul.008G056200 Phaseolus vulgaris HOM05D008013 ORTHO05D010149 2.3e-34 148.7 87 87.4
Lalb_Chr19g0126801 Lupinus albus HOM05D008013 ORTHO05D010149 3.9e-34 147.9 84 90.5
TPR.G29412 Trifolium pratense HOM05D008013 ORTHO05D010149 1.9e-33 145.6 84 86.9
Actinidia34775 Actinidia chinensis HOM05D008013 ORTHO05D010149 8.9e-31 136.7 84 78.6
TWI59G0485 Tripterygium wilfordii HOM05D008013 ORTHO05D010149 8.9e-31 136.7 86 74.4
CiPaw.08G117300 Carya illinoinensis HOM05D008013 ORTHO05D010149 2.0e-30 135.6 84 81.0
Haze_04520 Corylus avellana HOM05D008013 ORTHO05D010149 2.0e-30 135.6 84 81.0
Thecc.05G204600 Theobroma cacao HOM05D008013 ORTHO05D010149 4.4e-30 134.4 84 79.8
arahy.Tifrunner.gnm1.ann1.L7M8PN Arachis hypogaea HOM05D008013 ORTHO05D010149 2.9e-29 131.7 76 88.2
CSS0003713 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 4.9e-29 131.0 84 75.0
CSS0043393 Camellia sinensis var. sinensis HOM05D008013 ORTHO05D010149 4.9e-29 131.0 84 75.0
MD12G1257800 Malus domestica HOM05D008013 ORTHO05D010149 4.9e-29 131.0 84 77.4
Potri.019G051850 Populus trichocarpa HOM05D008013 ORTHO05D010149 4.9e-29 131.0 79 79.7
Ciclev10013456m.g Citrus clementina HOM05D008013 ORTHO05D010149 6.4e-29 130.6 81 82.7
Atru.chr12.2150 Acer truncatum HOM05D008013 ORTHO05D010149 1.4e-28 129.4 80 80.0
Dinv02912 Davidia involucrata HOM05D008013 ORTHO05D010149 1.4e-28 129.4 84 71.4
Manes.09G183801 Manihot esculenta HOM05D008013 ORTHO05D010149 1.4e-28 129.4 84 76.2
MD04G1240900 Malus domestica HOM05D008013 ORTHO05D010149 1.9e-28 129.0 84 76.2
GSVIVG01019150001 Vitis vinifera HOM05D008013 ORTHO05D010149 1.9e-28 129.0 84 77.4
Cc09_g03310 Coffea canephora HOM05D008013 ORTHO05D010149 4.1e-28 127.9 84 73.8
Gohir.A08G224100 Gossypium hirsutum HOM05D008013 ORTHO05D010149 5.4e-28 127.5 84 76.2
Gohir.D08G244400 Gossypium hirsutum HOM05D008013 ORTHO05D010149 5.4e-28 127.5 84 76.2
Rhsim09G0131000 Rhododendron simsii HOM05D008013 ORTHO05D010149 9.2e-28 126.7 85 71.8
THA.LOC104803516 Tarenaya hassleriana HOM05D008013 ORTHO05D010149 9.2e-28 126.7 84 73.8
RcHm_v2.0_Chr3g0448311 Rosa chinensis HOM05D008013 ORTHO05D010149 1.6e-27 125.9 84 73.8
Nn1g08299 Nelumbo nucifera HOM05D008013 ORTHO05D010149 1.7e-26 122.5 84 69.0
HanXRQChr11g0333671 Helianthus annuus HOM05D008013 ORTHO05D010149 3.0e-26 121.7 81 71.6
CsaV3_5G032690 Cucumis sativus L. HOM05D008013 ORTHO05D010149 8.6e-26 120.2 83 72.3
Solyc04g150139.1 Solanum lycopersicum HOM05D008013 ORTHO05D010149 1.9e-25 119.0 82 70.7
CAN.G4.29 Capsicum annuum HOM05D008013 ORTHO05D010149 2.5e-25 118.6 82 68.3
Gorai.004G260700 Gossypium raimondii HOM05D008013 ORTHO05D010149 3.3e-25 118.2 80 75.0
Gohir.D13G159800 Gossypium hirsutum HOM05D008013 ORTHO05D010149 5.6e-25 117.5 80 75.0
Sed0019978 Sechium edule HOM05D008013 ORTHO05D010149 7.3e-25 117.1 83 68.7
Thhalv10026665m.g Eutrema salsugineum HOM05D008013 ORTHO05D010149 9.5e-25 116.7 82 70.7
Oeu001239.1 Olea europaea HOM05D008013 ORTHO05D010149 1.2e-24 116.3 84 66.7
Sp7g28270 Schrenkiella parvula HOM05D008013 ORTHO05D010149 1.2e-24 116.3 82 69.5
Hund07321 Selenicereus undatus HOM05D008013 ORTHO05D010149 1.6e-24 115.9 81 70.4
AL7G21760 Arabidopsis lyrata HOM05D008013 ORTHO05D010149 2.8e-24 115.2 82 70.7
Carub.0007s1021 Capsella rubella HOM05D008013 ORTHO05D010149 2.8e-24 115.2 82 68.3
FAN05G0262 Fragaria x ananassa HOM05D008013 ORTHO05D010149 2.8e-24 115.2 97 61.9
Gohir.A13G155000 Gossypium hirsutum HOM05D008013 ORTHO05D010149 2.8e-24 115.2 80 73.8
AT4G30390 Arabidopsis thaliana HOM05D008013 ORTHO05D010149 1.4e-23 112.8 82 67.1
CANSAT54G1767 Cannabis sativa HOM05D000837 ORTHO05D008386 1.4e-23 112.8 80 70.0
Migut.F02069 Erythranthe guttata HOM05D008013 ORTHO05D010149 1.4e-23 112.8 84 61.9
Ah.06g195780 Amaranthus hybridus HOM05D008013 ORTHO05D010149 4.0e-23 111.3 83 66.3
PGR119G0441 Punica granatum HOM05D000837 ORTHO05D008386 4.0e-23 111.3 80 65.0
Aa31LG2G20150 Aethionema arabicum HOM05D008013 ORTHO05D010149 5.2e-23 110.9 82 67.1
EL10Ac4g09411 Beta vulgaris HOM05D008013 ORTHO05D010149 1.2e-22 109.8 78 69.2
A08p19260 Brassica napus HOM05D008013 ORTHO05D010149 1.2e-22 109.8 82 65.9
BraA08t33887Z Brassica rapa HOM05D008013 ORTHO05D010149 1.2e-22 109.8 82 65.9
C07p57840 Brassica napus HOM05D008013 ORTHO05D010149 1.5e-22 109.4 87 60.9
BolC7t46244H Brassica oleracea HOM05D008013 ORTHO05D010149 1.5e-22 109.4 87 60.9
A03p59800 Brassica napus HOM05D008013 ORTHO05D010149 2.0e-22 109.0 87 59.8
vmacro10397 Vaccinium macrocarpon HOM05D000837 ORTHO05D008386 2.0e-22 109.0 102 58.8
BcaNung00543 Brassica carinata HOM05D008013 ORTHO05D010149 3.4e-22 108.2 82 63.4
SHI02464 Sapria himalayana HOM05D008013 ORTHO05D010149 1.3e-21 106.3 83 65.1
HanXRQChr05g0156911 Helianthus annuus HOM05D000837 ORTHO05D008386 2.9e-21 105.1 82 63.4
BraA03t15033Z Brassica rapa HOM05D008013 ORTHO05D010149 4.9e-21 104.4 87 58.6
unitig_736.g22502 Utricularia gibba HOM05D008013 ORTHO05D010149 6.4e-21 104.0 80 61.2
Sabra19G0056800 Salix brachista HOM05D008013 ORTHO05D010149 1.4e-20 102.8 136 44.9
Hund21874 Selenicereus undatus HOM05D008013 ORTHO05D010149 5.4e-20 100.9 71 71.8
ClCG10G008070 Citrullus lanatus HOM05D000837 ORTHO05D008386 1.3e-18 96.3 115 48.7
PSO170G5632 Papaver somniferum HOM05D000837 ORTHO05D008386 5.1e-18 94.4 81 53.1
PSO357G0534 Papaver somniferum HOM05D008013 ORTHO05D010149 5.1e-18 94.4 81 53.1
Pp3c1_15100 Physcomitrium patens HOM05D008013 ORTHO05D010149 2.5e-17 92.0 82 52.4
BcaB03g12645 Brassica carinata HOM05D008013 ORTHO05D010149 6.2e-16 87.4 85 56.5
AagrBONN_evm.TU.Sc2ySwM_228.1824 Anthoceros agrestis HOM05D008013 ORTHO05D010149 1.5e-14 82.8 80 53.8
PGSC0003DMG402023117 Solanum tuberosum HOM05D008013 ORTHO05D010149 3.2e-12 75.1 82 48.8
TAR109G0001 Trochodendron aralioides HOM05D008013 ORTHO05D010149 2.1e-11 72.4 41 80.5
Sed0019520 Sechium edule HOM05D008013 ORTHO05D010149 4.6e-11 71.2 49 67.3
Sc16g0010260 Simmondsia chinensis HOM05D008013 ORTHO05D010149 2.3e-10 68.9 44 72.7
FAN09G3946 Fragaria x ananassa HOM05D000837 ORTHO05D008386 5.1e-10 67.8 50 66.0
BcaC01g01153 Brassica carinata HOM05D008013 ORTHO05D010149 7.3e-09 63.9 63 52.4
CARHR238290 Cardamine hirsuta HOM05D008013 ORTHO05D010149 1.6e-08 62.8 47 61.7
MBI07_g00621_MAGBIO Magnolia biondii HOM05D000837 ORTHO05D008386 3.6e-08 61.6 48 60.4
Cre12.g484300 Chlamydomonas reinhardtii HOM05D008013 ORTHO05D010149 1.2e-06 56.6 76 40.8
Eucgr.B01381 Eucalyptus grandis HOM05D008013 ORTHO05D010149 1.2e-06 56.6 79 43.0


User provided reference genes

Program Settings