Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 0.0e+00 1229.5 613 100.0
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 0.0e+00 1151.3 609 93.4
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 0.0e+00 1082.4 602 88.7
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 8.4e-311 1069.7 614 86.5
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 1.5e-280 969.1 608 78.8
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 7.1e-278 960.3 605 79.0
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 7.6e-272 940.3 611 76.1
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 8.2e-266 920.2 606 74.9
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 2.0e-264 915.6 606 76.2
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.0e-263 913.3 611 76.1
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 4.2e-222 775.0 636 62.7
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.0e-220 770.4 638 61.1
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 2.2e-218 762.7 640 61.1
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.1e-217 760.4 643 61.9
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 1.8e-217 759.6 639 60.6
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 3.2e-217 758.8 631 61.8
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 9.2e-217 757.3 631 61.3
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 3.9e-215 751.9 614 62.1
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 5.0e-215 751.5 611 62.8
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 6.6e-215 751.1 634 61.0
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 8.6e-215 750.7 633 61.0
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 2.5e-214 749.2 633 61.0
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.5e-214 749.2 633 61.0
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 5.6e-214 748.0 629 61.2
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 1.6e-213 746.5 612 63.4
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 2.3e-212 742.7 634 58.5
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 5.2e-212 741.5 610 60.8
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 6.8e-212 741.1 635 59.5
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 2.6e-211 739.2 603 62.0
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 6.4e-210 734.6 603 61.9
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.4e-209 733.4 633 59.1
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 9.2e-209 730.7 639 59.2
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.6e-208 729.9 621 59.1
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 6.0e-208 728.0 622 59.3
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 3.0e-207 725.7 624 58.5
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 1.5e-206 723.4 500 70.2
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 1.9e-206 723.0 622 58.4
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 4.3e-206 721.8 654 58.3
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 4.7e-205 718.4 603 60.2
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 4.0e-204 715.3 623 60.7
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 1.2e-203 713.8 624 57.4
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 2.6e-203 712.6 612 59.0
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.8e-203 711.4 613 60.0
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 5.8e-203 711.4 624 57.1
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 2.2e-202 709.5 625 57.9
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 2.2e-202 709.5 600 60.3
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 3.7e-202 708.8 621 60.4
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 1.4e-201 706.8 629 58.7
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 5.4e-201 704.9 626 56.2
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 9.2e-201 704.1 621 59.7
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 2.1e-200 703.0 633 59.1
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 2.7e-200 702.6 617 58.8
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 3.5e-200 702.2 622 59.3
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 7.8e-200 701.0 603 59.9
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 2.3e-199 699.5 611 59.1
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 2.3e-199 699.5 614 59.4
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 2.3e-199 699.5 508 67.9
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 3.0e-199 699.1 623 57.5
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 8.6e-199 697.6 629 58.3
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.2e-197 693.7 627 57.3
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 3.1e-196 689.1 616 58.6
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 5.2e-196 688.3 609 58.6
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 5.8e-195 684.9 607 59.0
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 5.8e-195 684.9 455 74.5
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 7.6e-195 684.5 614 57.3
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 2.2e-194 682.9 621 59.1
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 7.1e-193 677.9 555 62.7
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 1.0e-191 674.1 607 58.3
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 8.6e-191 671.0 441 73.2
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 5.6e-190 668.3 488 65.8
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.2e-189 667.2 617 57.5
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 1.8e-188 663.3 604 57.8
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 4.9e-186 655.2 608 56.4
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 5.6e-182 641.7 614 54.7
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 4.0e-180 635.6 608 54.4
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 7.6e-179 631.3 494 63.4
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 7.6e-179 631.3 494 63.4
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.8e-178 629.0 653 53.1
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 5.4e-177 625.2 443 67.7
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 2.1e-176 623.2 607 56.0
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 9.6e-174 614.4 681 50.2
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 3.1e-172 609.4 503 61.6
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 1.7e-170 603.6 596 53.2
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 9.3e-169 597.8 553 57.5
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 1.1e-166 590.9 512 56.6
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 3.3e-166 589.3 531 58.2
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 3.4e-163 579.3 401 68.8
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 1.9e-161 573.5 384 71.6
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.3e-158 562.4 392 68.9
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 4.3e-158 562.4 392 68.9
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.4e-156 557.4 518 56.6
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 8.4e-154 548.1 503 55.1
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 9.3e-153 544.7 384 67.7
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.7e-152 543.1 512 55.9
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 1.3e-151 540.8 387 68.2
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 2.3e-151 540.0 387 68.0
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 3.4e-147 526.2 589 48.0
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 1.0e-146 524.6 563 48.7
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 1.4e-143 514.2 448 59.6
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.8e-143 513.8 455 54.7
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.5e-142 510.8 495 53.7
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.9e-135 486.1 464 56.0
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 2.0e-134 483.8 472 56.1
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 4.0e-127 459.5 397 57.9
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 6.3e-125 452.2 446 54.0
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 3.8e-122 443.0 491 47.5
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 9.4e-121 438.3 344 61.0
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.4e-118 429.9 530 44.3
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 4.4e-118 429.5 533 45.6
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.5e-115 419.9 513 42.3
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 5.9e-115 419.1 466 47.9
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 5.7e-110 402.5 264 72.7
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 5.7e-102 375.9 257 69.6
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 7.8e-99 365.5 548 37.4
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 3.6e-96 356.7 305 55.7
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 4.4e-94 349.7 325 57.2
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 5.8e-94 349.4 504 40.3
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.5e-86 324.7 385 44.9
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 2.9e-85 320.5 276 55.1
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 3.1e-71 273.9 203 60.6
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.2e-67 261.9 505 32.9
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 2.4e-60 237.7 160 70.6
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.6e-51 208.4 195 48.7
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 4.8e-48 196.8 203 55.2
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 8.1e-48 196.1 133 69.2
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 1.1e-47 195.7 255 47.8
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.4e-39 167.9 122 60.7
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.4e-39 167.9 238 40.8
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 2.0e-38 164.9 122 59.8
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 5.1e-34 150.2 120 61.7
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.6e-32 145.2 122 55.7
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 1.2e-30 139.0 152 49.3
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 5.5e-28 130.2 221 37.6
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 2.2e-21 108.2 98 56.1
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 3.8e-21 107.5 87 59.8
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 1.1e-15 89.4 67 62.7
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.5e-12 79.0 145 34.5
Psat4g088520 Pisum sativum HOM05D005279 ORTHO05D044343 5.5e-12 77.0 78 55.1
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 7.0e-07 60.1 51 56.9
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 7.7e-06 56.6 50 56.0
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 7.7e-06 56.6 50 56.0


User provided reference genes

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