Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 0.0e+00 1550.4 766 100.0
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 0.0e+00 1345.9 744 90.2
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 0.0e+00 1264.6 736 83.7
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 0.0e+00 1244.6 736 83.0
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 0.0e+00 1152.9 748 75.7
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 0.0e+00 1151.7 722 78.0
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 0.0e+00 1150.6 737 76.8
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 0.0e+00 1143.3 743 75.6
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 0.0e+00 1120.9 723 75.4
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 0.0e+00 1120.1 720 76.1
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.6e-306 1055.8 745 71.1
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 2.3e-297 1025.4 703 69.6
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 4.3e-296 1021.1 696 70.0
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.4e-294 1016.1 729 70.1
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 8.9e-294 1013.4 703 69.1
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.5e-293 1012.7 712 67.7
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 2.5e-288 995.3 707 66.8
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 1.6e-287 992.6 739 65.2
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 2.8e-287 991.9 694 68.4
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.4e-286 989.6 723 66.4
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 3.1e-286 988.4 703 67.4
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 1.7e-284 982.6 732 65.0
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 6.0e-282 974.2 696 67.0
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 7.8e-282 973.8 699 66.4
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 1.3e-281 973.0 734 64.3
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 2.3e-281 972.2 734 64.3
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.6e-277 958.7 668 69.2
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 5.8e-277 957.6 700 65.4
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 5.8e-277 957.6 747 61.8
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.7e-276 956.1 705 64.8
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.7e-276 956.1 704 64.8
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 4.9e-276 954.5 720 64.4
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.1e-274 949.1 707 64.5
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.7e-273 946.0 721 63.4
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 3.8e-268 928.3 703 65.0
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.7e-265 919.5 764 59.2
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 2.1e-263 912.5 719 63.1
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 8.1e-263 910.6 693 64.9
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 2.6e-261 905.6 702 62.1
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 7.6e-261 904.0 690 63.8
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 9.9e-261 903.7 739 61.3
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 1.9e-259 899.4 704 62.1
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 5.1e-257 891.3 709 61.6
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 2.8e-255 885.6 717 61.5
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 2.8e-255 885.6 726 59.6
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 8.1e-255 884.0 737 59.6
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 8.1e-255 884.0 721 60.3
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.2e-252 875.9 730 60.4
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 3.8e-252 875.2 711 60.3
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 4.9e-252 874.8 609 66.8
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 6.4e-252 874.4 735 59.7
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 1.4e-251 873.2 723 60.0
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 2.1e-250 869.4 738 59.3
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 6.0e-250 867.8 703 60.6
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.8e-247 859.0 711 60.6
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 5.3e-246 854.7 733 59.1
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 6.9e-246 854.4 620 67.1
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 7.6e-245 850.9 698 61.9
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.3e-244 850.1 705 60.4
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 6.4e-244 847.8 704 59.8
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 1.4e-243 846.7 711 59.9
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 1.9e-243 846.3 689 60.5
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 2.7e-242 842.4 720 58.9
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 3.5e-242 842.0 768 56.5
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 4.6e-242 841.6 752 58.0
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 6.0e-242 841.3 772 56.7
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 1.5e-240 836.6 771 55.8
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 3.3e-240 835.5 715 59.4
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 8.2e-239 830.9 716 58.5
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 2.0e-237 826.2 747 56.0
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 2.6e-237 825.9 725 57.0
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.0e-236 823.9 748 57.4
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 8.4e-236 820.8 688 59.7
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 7.1e-235 817.8 690 58.3
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 2.1e-234 816.2 691 59.9
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 1.8e-233 813.1 754 55.4
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 2.4e-230 802.7 657 60.3
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 9.7e-224 780.8 694 55.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 3.7e-223 778.9 716 55.9
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 5.0e-220 768.5 675 55.9
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.9e-219 766.5 691 56.7
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 4.7e-218 761.9 727 53.2
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.0e-217 760.8 738 52.2
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.5e-216 756.9 725 52.6
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 5.3e-214 748.4 739 51.2
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.5e-213 746.9 694 54.9
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 8.5e-212 741.1 645 58.0
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 7.2e-211 738.0 658 56.1
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.4e-209 733.8 552 63.2
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 3.3e-208 729.2 635 58.3
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.7e-204 716.8 682 54.7
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 3.3e-200 702.6 675 55.1
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.4e-190 668.7 701 49.1
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 1.9e-187 660.2 751 46.5
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.5e-184 650.6 693 50.5
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 9.8e-184 647.9 646 53.4
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.8e-182 643.7 592 56.2
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 6.6e-172 608.6 472 61.4
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 9.8e-168 594.7 510 61.6
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 3.0e-148 530.0 359 69.4
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 2.2e-143 513.8 431 58.9
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 3.8e-135 486.5 661 41.6
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.2e-133 481.5 703 39.1
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 4.6e-125 453.0 764 38.1
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.1e-123 448.4 608 41.1
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 3.3e-123 446.8 706 37.7
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 5.6e-123 446.0 723 37.3
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 5.0e-111 406.4 782 35.8
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.9e-110 404.4 370 55.1
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.6e-109 400.2 758 35.0
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 7.7e-96 355.9 344 53.5
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 5.7e-91 339.7 335 54.3
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.9e-87 327.4 278 59.7
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 6.8e-68 263.1 536 32.5
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 7.8e-64 249.6 189 61.4
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 3.9e-63 247.3 176 68.2
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 2.9e-58 231.1 134 80.6
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.5e-54 218.8 314 40.4
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 7.3e-54 216.5 166 59.6
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 7.3e-54 216.5 141 70.2
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.1e-48 198.4 461 32.3
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.6e-35 154.8 163 46.6
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 2.0e-27 128.6 123 53.7
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 3.9e-23 114.4 103 50.5
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 2.5e-22 111.7 77 63.6
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 3.5e-16 91.3 406 25.6
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.8e-12 79.0 80 48.8
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 2.4e-12 78.6 68 57.4
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.9e-12 77.0 80 47.5
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 2.7e-08 65.1 127 37.8
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 6.0e-08 63.9 60 58.3
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.5e-06 59.3 88 40.9
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 9.6e-06 56.6 47 55.3


User provided reference genes

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