Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 4.8e-126 454.5 233 100.0
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 5.5e-114 414.5 233 91.8
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 7.5e-103 377.5 233 83.3
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 9.2e-101 370.5 233 81.1
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 3.3e-90 335.5 233 73.0
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 4.7e-89 331.6 233 73.8
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 2.2e-86 322.8 233 74.2
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 9.2e-85 317.4 234 72.2
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 2.1e-84 316.2 233 68.2
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 6.0e-84 314.7 234 71.4
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 1.7e-83 313.2 234 71.4
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.2e-81 307.0 234 71.4
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 9.9e-79 297.4 234 69.2
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 3.9e-75 285.4 237 65.8
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 5.1e-75 285.0 232 65.9
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 5.1e-75 285.0 236 64.0
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 6.6e-75 284.6 237 64.1
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 6.6e-75 284.6 235 63.4
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.6e-75 284.3 236 64.0
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.1e-72 277.3 235 63.4
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 3.1e-72 275.8 234 64.1
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.2e-71 273.9 234 64.1
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 3.4e-71 272.3 228 62.7
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 3.4e-71 272.3 224 61.6
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.6e-71 271.2 230 63.5
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.3e-70 270.4 225 64.4
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.7e-70 270.0 230 63.0
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.7e-70 270.0 230 63.0
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 2.2e-70 269.6 230 63.0
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 3.8e-70 268.9 224 62.5
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.4e-69 266.9 233 61.8
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 2.4e-69 266.2 230 61.3
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 3.2e-69 265.8 230 62.6
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 3.2e-69 265.8 216 63.9
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 5.4e-69 265.0 230 63.0
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 9.3e-69 264.2 224 59.8
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 9.3e-69 264.2 214 64.5
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.2e-68 263.8 231 62.3
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 3.5e-68 262.3 231 62.8
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 7.8e-68 261.2 230 59.1
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.0e-67 260.8 194 68.6
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.3e-67 260.4 209 65.1
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 1.7e-67 260.0 228 59.2
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 3.0e-67 259.2 234 58.5
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 3.9e-67 258.8 234 60.3
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 6.6e-67 258.1 235 58.3
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 1.1e-66 257.3 227 57.7
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 5.6e-66 255.0 192 64.6
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 5.6e-66 255.0 230 57.8
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 7.3e-66 254.6 227 57.7
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.6e-65 253.4 194 63.9
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.6e-65 253.4 233 57.9
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 2.8e-65 252.7 228 57.5
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 3.6e-65 252.3 189 67.2
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 1.1e-64 250.8 201 66.2
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 1.8e-64 250.0 232 56.9
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 3.1e-64 249.2 234 56.4
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 4.0e-64 248.8 192 64.6
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 4.0e-64 248.8 227 56.8
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.2e-63 247.3 231 56.3
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.2e-63 247.3 226 58.0
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.5e-63 246.9 233 57.9
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 2.0e-63 246.5 235 56.2
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 4.5e-63 245.4 232 61.2
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 4.5e-63 245.4 227 58.6
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 5.8e-63 245.0 237 56.1
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 9.9e-63 244.2 227 56.4
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 1.3e-62 243.8 231 60.6
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 6.4e-62 241.5 235 56.6
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 1.9e-61 240.0 232 55.2
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 4.2e-61 238.8 232 53.9
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 6.0e-60 235.0 231 55.0
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 1.8e-59 233.4 231 54.5
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 3.0e-59 232.6 199 64.3
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 1.1e-58 230.7 232 53.4
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 3.3e-58 229.2 192 60.4
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 3.3e-58 229.2 227 53.7
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 5.6e-58 228.4 231 53.2
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 5.6e-58 228.4 195 57.4
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 9.6e-58 227.6 234 53.8
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 9.6e-58 227.6 227 54.2
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 2.1e-57 226.5 195 55.9
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 2.1e-57 226.5 220 54.1
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 2.8e-57 226.1 230 56.1
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 3.7e-57 225.7 195 54.9
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 3.7e-57 225.7 201 57.7
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 4.8e-57 225.3 195 54.9
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 4.8e-57 225.3 230 57.4
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.8e-57 225.3 181 60.2
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 8.1e-57 224.6 194 54.6
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 8.1e-57 224.6 232 53.0
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 2.4e-56 223.0 228 55.3
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.4e-56 223.0 233 51.9
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 3.1e-56 222.6 194 54.1
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 3.1e-56 222.6 194 54.1
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 3.1e-56 222.6 194 59.8
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 1.2e-55 220.7 195 54.4
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.5e-55 220.3 188 54.8
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.5e-55 220.3 196 56.1
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 2.6e-55 219.5 195 53.3
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 3.4e-55 219.2 213 55.4
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.3e-54 217.2 203 55.7
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.3e-54 217.2 199 60.8
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.7e-54 216.9 188 53.7
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.7e-54 216.9 235 49.4
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 2.2e-54 216.5 243 51.0
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 6.4e-54 214.9 203 55.2
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 3.2e-53 212.6 198 57.6
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 7.1e-53 211.5 261 46.7
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 2.1e-52 209.9 226 49.6
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.7e-52 209.5 253 51.0
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.0e-51 206.1 184 57.1
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.1e-50 204.1 181 53.6
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.5e-50 203.0 261 47.1
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 1.3e-46 190.7 180 53.3
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 4.9e-46 188.7 142 66.2
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.9e-45 186.8 152 59.9
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 7.1e-45 184.9 182 52.7
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 2.7e-44 183.0 231 45.5
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 6.0e-44 181.8 158 55.7
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.3e-43 180.6 149 61.7
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 5.1e-43 178.7 120 75.0
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 3.7e-41 172.6 312 40.1
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 4.1e-40 169.1 234 43.6
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 3.4e-39 166.0 233 43.3
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 6.1e-36 155.2 246 39.4
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.7e-33 146.0 154 50.6
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 1.1e-32 144.4 134 55.2
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 6.9e-32 141.7 200 40.5
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.1e-29 134.4 230 39.1
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 4.7e-28 129.0 180 42.8
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 2.0e-26 123.6 199 38.7
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 3.1e-24 116.3 202 36.6
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.2e-23 114.4 248 33.5
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 1.5e-23 114.0 143 45.5
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 2.9e-22 109.8 116 49.1
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 5.0e-22 109.0 76 71.1
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.6e-18 96.7 88 58.0
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.3e-17 94.4 88 54.5
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 6.1e-12 75.5 76 46.1
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 7.0e-08 62.0 181 23.8
Hma1.2p1_0312F.1_g121470 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.2e-07 61.2 77 48.1
Hma1.2p1_0386F.1_g141900 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.0e-07 60.5 77 46.8
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 3.5e-07 59.7 39 69.2


User provided reference genes

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