Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 8.8e-78 293.5 144 100.0
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 2.0e-77 292.4 144 99.3
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 9.7e-77 290.0 144 97.9
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 1.3e-76 289.7 144 98.6
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 2.8e-76 288.5 144 97.2
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 3.7e-76 288.1 144 97.9
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 3.7e-76 288.1 144 97.2
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 3.7e-76 288.1 144 97.9
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 4.8e-76 287.7 144 96.5
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 4.8e-76 287.7 144 97.2
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 4.8e-76 287.7 144 96.5
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 1.8e-75 285.8 144 96.5
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 3.1e-75 285.0 144 95.8
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 4.1e-75 284.6 144 96.5
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 5.3e-75 284.3 144 96.5
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 95.8
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 96.5
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 95.8
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.2e-74 283.1 144 95.1
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 95.1
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 95.8
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 95.8
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 95.1
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 95.8
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 2.7e-74 282.0 144 95.1
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 3.5e-74 281.6 142 94.4
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 3.5e-74 281.6 143 94.4
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 93.8
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 95.1
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 95.8
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 4.5e-74 281.2 143 95.8
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 93.8
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 94.4
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 7.7e-74 280.4 142 95.1
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 7.7e-74 280.4 142 95.1
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 95.1
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 93.8
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.0e-73 280.0 141 95.0
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 94.4
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.8
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 93.1
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.7e-73 279.3 142 94.4
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 94.4
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 92.4
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 92.4
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 92.4
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 93.8
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 92.4
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 92.4
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 93.8
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 93.8
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 92.4
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 91.7
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 91.7
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 92.4
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 2.5e-72 275.4 142 93.0
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 2.5e-72 275.4 142 93.0
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 2.5e-72 275.4 142 93.0
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 91.0
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 2.5e-72 275.4 142 93.0
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 93.6
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 3.2e-72 275.0 144 91.7
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 4.2e-72 274.6 141 92.9
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 91.0
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 93.1
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 91.0
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 91.0
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 91.7
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 1.6e-71 272.7 142 92.3
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 8.0e-71 270.4 142 91.5
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 1.8e-70 269.2 142 90.8
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 3.0e-70 268.5 138 91.3
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 5.2e-70 267.7 130 98.5
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.2e-69 266.5 154 87.7
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 2.6e-69 265.4 142 89.4
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 5.7e-69 264.2 170 78.2
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 7.5e-69 263.8 141 88.7
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 9.8e-69 263.5 167 79.0
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.3e-68 263.1 143 88.8
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 1.7e-68 262.7 138 88.4
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 2.2e-68 262.3 138 89.1
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 1.1e-67 260.0 142 86.6
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 4.1e-67 258.1 203 68.0
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 9.1e-67 256.9 140 87.1
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.2e-66 256.5 140 87.9
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.6e-66 256.1 140 85.7
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 2.0e-66 255.8 140 86.4
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 2.0e-66 255.8 140 85.7
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 2.0e-66 255.8 140 85.7
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 4.5e-66 254.6 140 85.7
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 4.5e-66 254.6 137 87.6
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 85.7
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 84.3
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 5.0e-65 251.1 140 83.6
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 5.0e-65 251.1 208 65.9
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.1e-64 250.0 138 84.1
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.5e-64 249.6 142 83.1
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 83.6
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 83.6
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.3e-64 248.4 140 84.3
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 7.2e-64 247.3 140 82.1
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 7.2e-64 247.3 140 82.1
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 3.6e-63 245.0 140 83.6
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 3.6e-63 245.0 140 83.6
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 3.6e-63 245.0 140 83.6
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 3.6e-63 245.0 140 83.6
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 8.0e-63 243.8 137 85.4
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.0e-62 243.4 156 78.2
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 4.0e-62 241.5 168 72.0
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 2.0e-61 239.2 138 80.4
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 4.9e-60 234.6 142 81.7
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 7.0e-59 230.7 129 84.5
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 7.8e-58 227.3 144 71.5
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 2.9e-57 225.3 140 77.9
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 5.2e-54 214.5 142 68.3
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 4.1e-51 204.9 138 65.2
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.6e-50 203.0 122 78.7
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.7e-50 202.2 114 83.3
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 4.6e-50 201.4 160 65.0
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 7.8e-50 200.7 99 97.0
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 3.0e-49 198.7 136 64.0
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.5e-48 195.7 120 81.7
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 6.8e-46 187.6 97 89.7
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 4.4e-45 184.9 118 78.8
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 5.1e-33 144.8 74 97.3
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.5e-29 133.3 74 87.8
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 7.6e-29 131.0 74 85.1
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.3e-28 130.2 74 85.1
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 3.8e-28 128.6 148 47.3
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 3.2e-27 125.6 140 51.4
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 3.9e-17 92.0 43 95.3
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 4.5e-13 78.6 161 33.5
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.2e-12 76.3 117 37.6
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 2.9e-12 75.9 157 31.2
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 4.2e-11 72.0 49 67.3
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 7.1e-11 71.2 44 77.3
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.3e-07 60.5 132 28.8
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 1.6e-07 60.1 36 69.4
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 4.0e-06 55.5 83 38.6


User provided reference genes

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