Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 1.7e-61 239.2 126 100.0
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 4.9e-56 221.1 126 92.1
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 1.2e-49 199.9 124 84.7
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 4.1e-47 191.4 124 79.0
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 2.7e-46 188.7 124 79.0
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 3.5e-46 188.3 125 77.6
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 6.6e-45 184.1 125 76.0
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 3.3e-44 181.8 124 79.0
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 1.6e-43 179.5 124 75.0
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 2.8e-43 178.7 124 75.0
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 1.8e-42 176.0 133 70.7
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 6.4e-40 167.5 142 64.1
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 1.0e-37 160.2 154 57.8
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 1.0e-37 160.2 144 61.8
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 1.0e-37 160.2 142 62.0
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 1.3e-37 159.8 142 62.0
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 1.3e-37 159.8 138 63.8
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 1.7e-37 159.5 134 66.4
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 1.7e-37 159.5 134 64.2
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 1.7e-37 159.5 136 62.5
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 2.3e-37 159.1 134 62.7
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 2.3e-37 159.1 143 59.4
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 2.3e-37 159.1 124 66.1
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 8.6e-37 157.1 138 59.4
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 1.1e-36 156.8 138 59.4
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 1.1e-36 156.8 142 61.3
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 2.5e-36 155.6 132 62.1
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 4.3e-36 154.8 134 62.7
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 4.3e-36 154.8 143 60.8
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.3e-36 154.8 128 63.3
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 5.6e-36 154.5 131 62.6
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 7.3e-36 154.1 128 62.5
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 7.3e-36 154.1 145 57.9
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 7.3e-36 154.1 128 64.1
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 7.3e-36 154.1 144 63.2
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 9.5e-36 153.7 134 61.2
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 9.5e-36 153.7 128 64.1
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 9.5e-36 153.7 151 60.3
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 1.6e-35 152.9 128 62.5
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 1.6e-35 152.9 145 58.6
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 2.1e-35 152.5 134 61.9
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 2.1e-35 152.5 144 62.5
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 2.1e-35 152.5 124 63.7
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.8e-35 152.1 147 61.2
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 2.8e-35 152.1 147 61.2
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 3.6e-35 151.8 139 57.6
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 3.6e-35 151.8 136 60.3
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 3.6e-35 151.8 133 63.9
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 4.7e-35 151.4 143 58.0
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 4.7e-35 151.4 143 58.0
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 4.7e-35 151.4 136 61.0
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 4.7e-35 151.4 149 55.7
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 6.2e-35 151.0 133 60.9
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 6.2e-35 151.0 145 60.0
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 8.1e-35 150.6 127 62.2
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.4e-34 149.8 144 59.0
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 1.8e-34 149.4 130 63.1
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.8e-34 149.4 130 63.1
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 1.8e-34 149.4 130 63.1
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.8e-34 149.4 144 61.1
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 2.3e-34 149.1 136 58.1
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 2.3e-34 149.1 135 60.0
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 2.3e-34 149.1 135 60.0
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 4.0e-34 148.3 128 60.9
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 4.0e-34 148.3 133 63.2
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 4.0e-34 148.3 127 63.0
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 4.0e-34 148.3 130 62.3
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 5.2e-34 147.9 113 69.9
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 8.9e-34 147.1 131 62.6
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 8.9e-34 147.1 138 61.6
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 1.2e-33 146.7 146 56.8
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 3.4e-33 145.2 129 58.9
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 3.4e-33 145.2 142 59.2
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 4.4e-33 144.8 142 59.2
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 4.4e-33 144.8 135 58.5
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 5.8e-33 144.4 146 57.5
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 7.6e-33 144.1 147 58.5
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 9.9e-33 143.7 150 56.0
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 9.9e-33 143.7 148 57.4
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 9.9e-33 143.7 140 60.0
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 1.3e-32 143.3 147 57.8
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.7e-32 142.9 151 58.9
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 2.9e-32 142.1 148 56.1
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 3.7e-32 141.7 136 58.8
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 6.4e-32 141.0 141 54.6
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 8.4e-32 140.6 124 60.5
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 1.1e-31 140.2 146 54.8
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 1.1e-31 140.2 159 50.9
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 1.4e-31 139.8 127 61.4
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.9e-31 139.4 112 67.0
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 1.9e-31 139.4 127 56.7
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 4.1e-31 138.3 141 55.3
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 5.4e-31 137.9 155 51.6
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 7.1e-31 137.5 112 66.1
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 9.2e-31 137.1 128 60.2
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 2.1e-30 136.0 121 61.2
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 2.1e-30 136.0 129 62.0
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 2.7e-30 135.6 121 60.3
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 2.7e-30 135.6 121 60.3
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 2.7e-30 135.6 121 60.3
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 2.7e-30 135.6 121 60.3
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 6.0e-30 134.4 134 53.7
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 1.0e-29 133.7 131 55.0
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 5.1e-29 131.3 130 60.8
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 5.1e-29 131.3 133 55.6
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 5.1e-29 131.3 145 52.4
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.1e-28 130.2 143 51.0
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 5.6e-28 127.9 136 53.7
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 3.6e-27 125.2 130 56.2
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 6.2e-27 124.4 140 47.9
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 1.8e-26 122.9 124 53.2
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 7.6e-25 117.5 143 47.6
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 1.9e-23 112.8 134 49.3
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 5.4e-23 111.3 106 59.4
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 1.6e-22 109.8 108 58.3
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 7.8e-22 107.5 119 53.8
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 4.3e-20 101.7 121 47.1
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 5.6e-20 101.3 140 47.9
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 2.8e-19 99.0 144 43.1
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 1.4e-18 96.7 120 49.2
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 1.7e-16 89.7 110 49.1
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 2.4e-15 85.9 67 62.7
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 3.2e-15 85.5 126 46.0
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 5.4e-15 84.7 124 42.7
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 2.1e-14 82.8 63 63.5
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 8.7e-13 77.4 78 57.7
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 5.3e-10 68.2 104 40.4
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 1.3e-08 63.5 69 50.7
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 3.2e-07 58.9 103 38.8
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 9.3e-07 57.4 107 35.5
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.2e-06 57.0 55 50.9
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 6.0e-06 54.7 113 32.7
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 7.9e-06 54.3 113 31.9
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 7.9e-06 54.3 113 31.9
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 7.9e-06 54.3 113 31.9
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 7.9e-06 54.3 112 33.0
Zm00001eb181930 Zea mays HOM05D001107 ORTHO05D007353 7.9e-06 54.3 46 60.9


User provided reference genes

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