Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G244400 Glycine max HOM05D007972 ORTHO05D010352 3.3e-99 365.2 197 100.0
Glyma.18G249100 Glycine max HOM05D007972 ORTHO05D010352 8.6e-92 340.5 197 93.4
VMungo1383G2083 Vigna mungo HOM05D007972 ORTHO05D010352 4.7e-74 281.6 192 79.2
Lalb_Chr01g0021721 Lupinus albus HOM05D007972 ORTHO05D010352 2.6e-64 249.2 194 71.1
Ca_08498_v3 Cicer arietinum L. HOM05D007972 ORTHO05D010352 3.8e-63 245.4 201 70.6
Ca_29723_v3 Cicer arietinum L. HOM05D007972 ORTHO05D010352 3.8e-63 245.4 201 70.6
Medtr7g092700 Medicago truncatula HOM05D007972 ORTHO05D010352 1.1e-59 233.8 201 66.7
TPR.G4718 Trifolium pratense HOM05D007972 ORTHO05D010352 7.3e-59 231.1 203 65.5
Lj1g0012968 Lotus japonicus HOM05D007972 ORTHO05D010352 1.6e-58 229.9 197 67.5
TPR.G28769 Trifolium pratense HOM05D007972 ORTHO05D010352 2.4e-57 226.1 203 66.0
Psat3g070000 Pisum sativum HOM05D007972 ORTHO05D010352 4.0e-57 225.3 201 65.7
VMungo1383G2794 Vigna mungo HOM05D007972 ORTHO05D010352 1.2e-53 213.8 186 64.5
Glyma.09G244600 Glycine max HOM05D007972 ORTHO05D010352 1.6e-53 213.4 186 64.5
Medtr7g092710 Medicago truncatula HOM05D007972 ORTHO05D010352 7.9e-53 211.1 194 59.3
Lj5g0008867 Lotus japonicus HOM05D007972 ORTHO05D010352 1.0e-52 210.7 191 61.8
Medtr7g081655 Medicago truncatula HOM05D007972 ORTHO05D010352 2.8e-50 202.6 191 62.3
Psat3g099040 Pisum sativum HOM05D007972 ORTHO05D010352 5.8e-48 194.9 200 59.0
CiPaw.13G024900 Carya illinoinensis HOM05D007972 ORTHO05D010352 1.7e-47 193.4 182 61.5
QL04p029068 Quercus lobata HOM05D007972 ORTHO05D010352 6.5e-47 191.4 197 58.9
TPR.G14096 Trifolium pratense HOM05D007972 ORTHO05D010352 1.2e-45 187.2 191 59.2
Cfa011053 Carpinus fangiana HOM05D007972 ORTHO05D010352 1.8e-41 173.3 197 52.3
Prupe.2G122000 Prunus persica HOM05D007972 ORTHO05D010352 2.4e-41 172.9 187 56.7
TWI14G1321 Tripterygium wilfordii HOM05D007972 ORTHO05D010352 1.5e-40 170.2 166 57.8
Manes.11G122500 Manihot esculenta HOM05D007972 ORTHO05D010352 5.0e-39 165.2 195 50.3
Manes.04G044100 Manihot esculenta HOM05D007972 ORTHO05D010352 4.2e-38 162.2 205 47.3
CANSAT25G1078 Cannabis sativa HOM05D007972 ORTHO05D010352 5.5e-38 161.8 190 49.5
Potri.017G027900 Populus trichocarpa HOM05D007972 ORTHO05D010352 1.6e-37 160.2 202 50.0
Sabra17G0016900 Salix brachista HOM05D007972 ORTHO05D010352 4.6e-37 158.7 170 54.7
Oeu037442.1 Olea europaea HOM05D007972 ORTHO05D010352 3.0e-36 156.0 191 50.8
TAR636G0859 Trochodendron aralioides HOM05D007972 ORTHO05D010352 6.7e-36 154.8 183 54.6
MD07G1098000 Malus domestica HOM05D007972 ORTHO05D010352 4.3e-35 152.1 181 49.7
Sabra17G0017000 Salix brachista HOM05D007972 ORTHO05D010352 4.3e-35 152.1 178 52.8
TWI59G1165 Tripterygium wilfordii HOM05D007972 ORTHO05D010352 9.7e-35 151.0 191 47.1
Nn1g00786 Nelumbo nucifera HOM05D007972 ORTHO05D010352 1.6e-34 150.2 195 47.7
Glyma.18G248700 Glycine max HOM05D007972 ORTHO05D010352 2.2e-34 149.8 186 48.4
RcHm_v2.0_Chr1g0346011 Rosa chinensis HOM05D007972 ORTHO05D010352 3.7e-34 149.1 190 50.0
MD02G1218900 Malus domestica HOM05D007972 ORTHO05D010352 2.4e-33 146.4 189 50.3
MBI04_g13845_MAGBIO Magnolia biondii HOM05D007972 ORTHO05D010352 1.2e-32 144.1 188 48.9
Phvul.008G048700 Phaseolus vulgaris HOM05D007972 ORTHO05D010352 2.2e-31 139.8 186 47.3
Migut.B01509 Erythranthe guttata HOM05D007972 ORTHO05D010352 6.5e-31 138.3 184 48.9
RcHm_v2.0_Chr1g0346041 Rosa chinensis HOM05D007972 ORTHO05D010352 8.5e-31 137.9 190 47.4
Phvul.008G048532 Phaseolus vulgaris HOM05D007972 ORTHO05D010352 1.9e-30 136.7 105 76.2
AUR62032352 Chenopodium quinoa HOM05D007972 ORTHO05D010352 2.1e-29 133.3 175 45.7
Nitab4.5_0004837g0020 Nicotiana tabacum HOM05D007972 ORTHO05D010352 2.3e-28 129.8 171 48.5
AUR62041847 Chenopodium quinoa HOM05D007972 ORTHO05D010352 5.1e-28 128.6 176 46.0
Peaxi162Scf00853g00034 Petunia axillaris HOM05D007972 ORTHO05D010352 3.3e-27 125.9 169 47.3
Nitab4.5_0000563g0210 Nicotiana tabacum HOM05D007972 ORTHO05D010352 1.3e-26 124.0 171 47.4
Phvul.008G048466 Phaseolus vulgaris HOM05D007972 ORTHO05D010352 1.7e-26 123.6 81 80.2
Eucgr.E01544 Eucalyptus grandis HOM05D007972 ORTHO05D010352 1.8e-25 120.2 186 43.0
Eucgr.E01542 Eucalyptus grandis HOM05D007972 ORTHO05D010352 2.6e-24 116.3 186 42.5
CAN.G1585.6 Capsicum annuum HOM05D007972 ORTHO05D010352 1.0e-23 114.4 173 43.9
Solyc01g089890.3 Solanum lycopersicum HOM05D007972 ORTHO05D010352 1.3e-23 114.0 174 43.1
QL04p029065 Quercus lobata HOM05D007972 ORTHO05D010352 3.6e-21 105.9 146 52.1
CAN.G1585.7 Capsicum annuum HOM05D007972 ORTHO05D010352 1.0e-20 104.4 184 40.2
Eucgr.E01539 Eucalyptus grandis HOM05D007972 ORTHO05D010352 6.7e-20 101.7 187 38.5
PGSC0003DMG401031172 Solanum tuberosum HOM05D007972 ORTHO05D010352 1.5e-19 100.5 172 40.7
Sopen01g035730 Solanum pennellii HOM05D007972 ORTHO05D010352 4.4e-19 99.0 124 48.4
Solyc01g089880.3 Solanum lycopersicum HOM05D007972 ORTHO05D010352 2.2e-18 96.7 168 42.3
Sopen01g035720 Solanum pennellii HOM05D007972 ORTHO05D010352 2.8e-18 96.3 168 42.9
PGSC0003DMG400031171 Solanum tuberosum HOM05D007972 ORTHO05D010352 1.8e-17 93.6 172 41.9
EL10Ac2g02566 Beta vulgaris HOM05D007972 ORTHO05D010352 3.3e-11 72.8 84 52.4
Eucgr.E01540 Eucalyptus grandis HOM05D007972 ORTHO05D010352 6.3e-10 68.6 115 37.4
MD10G1191700 Malus domestica HOM05D000490 ORTHO05D000785 4.5e-08 62.4 183 30.6
Sc09g0003980 Simmondsia chinensis HOM05D000490 ORTHO05D000785 7.7e-08 61.6 152 33.6
COL.COLO4_30645 Corchorus olitorius HOM05D000490 ORTHO05D000785 1.7e-07 60.5 194 35.6
Duzib235G1330 Durio zibethinus HOM05D000490 ORTHO05D000785 1.7e-07 60.5 180 35.6
Atru.chr1.3674 Acer truncatum HOM05D000490 ORTHO05D000785 2.2e-07 60.1 183 35.5
ClCG07G000640 Citrullus lanatus HOM05D000490 ORTHO05D000785 3.8e-07 59.3 138 34.8
PSO063G6694 Papaver somniferum HOM05D000490 ORTHO05D000785 3.8e-07 59.3 138 37.7
Sabra03G0025900 Salix brachista HOM05D000490 ORTHO05D000785 3.8e-07 59.3 197 34.0
MD05G1204600 Malus domestica HOM05D000490 ORTHO05D000785 5.0e-07 58.9 183 31.1
CSS0014374 Camellia sinensis var. sinensis HOM05D000490 ORTHO05D000785 1.1e-06 57.8 189 34.4
CSS0028104 Camellia sinensis var. sinensis HOM05D000490 ORTHO05D000785 1.1e-06 57.8 189 34.4
Duzib192G0560 Durio zibethinus HOM05D000490 ORTHO05D000785 1.5e-06 57.4 186 35.5
arahy.Tifrunner.gnm1.ann1.F86J4F Arachis hypogaea HOM05D005905 ORTHO05D005996 1.9e-06 57.0 55 52.7
CSS0026189 Camellia sinensis var. sinensis HOM05D000490 ORTHO05D000785 3.2e-06 56.2 189 34.4
Sc12g0010180 Simmondsia chinensis HOM05D000490 ORTHO05D000785 3.2e-06 56.2 190 30.5
Gorai.003G059900 Gossypium raimondii HOM05D000490 ORTHO05D000785 5.5e-06 55.5 178 34.8
Sed0011012 Sechium edule HOM05D000490 ORTHO05D000785 5.5e-06 55.5 138 34.8
Lj3g0012699 Lotus japonicus HOM05D000490 ORTHO05D000785 7.2e-06 55.1 195 32.8
PSO832G2301 Papaver somniferum HOM05D000490 ORTHO05D000785 7.2e-06 55.1 128 35.2
Rhsim08G0232500 Rhododendron simsii HOM05D000490 ORTHO05D000785 7.2e-06 55.1 189 33.9
CiPaw.03G258500 Carya illinoinensis HOM05D000490 ORTHO05D000785 9.4e-06 54.7 186 31.7
Gohir.A02G115800 Gossypium hirsutum HOM05D000490 ORTHO05D000785 9.4e-06 54.7 180 35.0


User provided reference genes

Program Settings