Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.1e-158 563.1 272 100.0
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 6.7e-87 324.7 169 89.9
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 6.1e-72 275.0 167 76.6
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 1.5e-70 270.4 168 79.2
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 8.3e-69 264.6 180 70.6
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.3e-63 246.5 168 69.6
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 2.3e-63 246.5 168 70.8
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.3e-53 214.2 168 61.3
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 3.9e-50 202.6 161 60.9
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 3.3e-41 172.9 230 45.2
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.6e-40 170.6 173 52.6
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 3.6e-40 169.5 272 42.6
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.4e-39 167.5 187 48.1
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 3.4e-38 162.9 173 48.6
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.4e-38 162.9 172 50.0
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 1.7e-37 160.6 134 63.4
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 8.4e-37 158.3 172 48.3
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.3e-34 151.0 251 37.8
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.1e-31 141.4 133 56.4
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.8e-30 135.6 153 47.1
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 1.4e-28 131.0 179 44.7
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.4e-28 131.0 103 57.3
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 7.3e-25 118.6 137 48.2
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 2.4e-23 113.6 107 48.6
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 3.1e-23 113.2 182 40.7
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 6.4e-21 105.5 175 39.4
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.1e-20 104.8 200 37.5
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 3.2e-20 103.2 190 36.3
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 3.2e-20 103.2 177 37.9
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.7e-19 100.1 171 38.6
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.5e-19 99.8 191 34.6
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 3.5e-19 99.8 170 38.8
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 4.6e-19 99.4 171 39.2
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 4.6e-19 99.4 80 63.8
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.0e-19 99.0 193 35.8
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 6.0e-19 99.0 173 38.7
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 6.0e-19 99.0 168 37.5
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 7.9e-19 98.6 173 37.6
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 7.9e-19 98.6 173 37.6
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 7.9e-19 98.6 175 37.7
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 7.9e-19 98.6 192 37.0
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.0e-18 98.2 168 38.7
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.3e-18 97.8 174 36.8
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.3e-18 97.1 169 38.5
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.0e-18 96.7 168 38.1
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 3.0e-18 96.7 162 40.1
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 5.1e-18 95.9 172 37.2
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 5.1e-18 95.9 170 37.6
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 5.1e-18 95.9 167 37.1
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 6.7e-18 95.5 173 35.3
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.7e-18 95.5 176 38.1
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 6.7e-18 95.5 193 34.7
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 6.7e-18 95.5 173 35.8
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 6.7e-18 95.5 164 39.6
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 8.7e-18 95.1 163 37.4
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 1.1e-17 94.7 175 36.0
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.5e-17 94.4 171 38.0
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.5e-17 94.4 190 33.7
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.5e-17 94.4 171 39.2
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.9e-17 94.0 174 35.6
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 1.9e-17 94.0 174 35.6
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.9e-17 94.0 173 35.8
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.9e-17 94.0 171 37.4
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.9e-17 94.0 191 32.5
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.9e-17 94.0 192 33.3
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.9e-17 94.0 171 38.0
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 2.5e-17 93.6 174 35.6
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.5e-17 93.6 174 35.6
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.5e-17 93.6 168 36.3
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 3.3e-17 93.2 172 38.4
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 3.3e-17 93.2 174 35.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 4.3e-17 92.8 170 37.6
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 4.3e-17 92.8 172 37.2
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 4.3e-17 92.8 170 38.8
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 5.6e-17 92.4 171 37.4
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 5.6e-17 92.4 165 37.0
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.6e-17 92.4 163 37.4
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 7.4e-17 92.0 168 36.9
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 7.4e-17 92.0 192 32.8
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 7.4e-17 92.0 194 35.6
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 9.6e-17 91.7 168 35.7
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 9.6e-17 91.7 168 38.1
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 9.6e-17 91.7 167 35.3
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 9.6e-17 91.7 168 36.3
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 1.3e-16 91.3 169 37.9
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.3e-16 91.3 173 34.7
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.3e-16 91.3 173 34.7
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.3e-16 91.3 192 32.8
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.3e-16 91.3 192 32.8
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.3e-16 91.3 192 32.8
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.3e-16 91.3 174 35.1
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.6e-16 90.9 175 37.1
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 1.6e-16 90.9 195 33.8
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 2.1e-16 90.5 149 37.6
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 3.6e-16 89.7 175 35.4
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 3.6e-16 89.7 174 34.5
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 4.8e-16 89.4 163 35.6
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 4.8e-16 89.4 172 34.3
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 6.2e-16 89.0 192 32.3
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.1e-15 88.2 170 37.6
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 1.1e-15 88.2 169 36.7
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.4e-15 87.8 174 35.1
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.4e-15 87.0 168 36.9
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.4e-15 87.0 167 36.5
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 3.1e-15 86.7 171 36.3
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 3.1e-15 86.7 171 36.3
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.1e-15 86.7 217 32.3
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 3.1e-15 86.7 174 36.2
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.0e-15 86.3 172 34.3
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 4.0e-15 86.3 165 37.6
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 5.3e-15 85.9 174 34.5
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 6.9e-15 85.5 190 34.7
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.5e-14 84.3 155 36.1
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 1.5e-14 84.3 184 33.7
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 2.0e-14 84.0 184 33.2
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.6e-14 83.6 214 32.7
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.6e-14 83.6 183 33.3
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 3.4e-14 83.2 168 35.7
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 5.8e-14 82.4 174 32.2
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 9.9e-14 81.6 172 37.2
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 9.9e-14 81.6 159 34.6
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.3e-13 81.3 168 32.7
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.7e-13 80.9 166 33.7
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 2.2e-13 80.5 211 31.8
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.2e-13 80.5 168 33.9
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.9e-13 80.1 136 36.8
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 3.8e-13 79.7 172 34.3
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.8e-13 79.7 135 39.3
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 3.8e-13 79.7 106 46.2
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 3.8e-13 79.7 151 35.1
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 4.9e-13 79.3 192 29.2
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 4.9e-13 79.3 184 32.1
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 1.1e-12 78.2 144 34.0
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 1.9e-12 77.4 155 36.1
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.9e-12 77.4 159 37.7
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 2.4e-12 77.0 185 34.6
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 3.2e-12 76.6 161 33.5
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 5.5e-12 75.9 152 34.9
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 7.1e-12 75.5 150 35.3
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 2.1e-11 73.9 143 33.6
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 3.5e-11 73.2 170 31.8
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 3.5e-11 73.2 170 33.5
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.0e-10 71.6 153 32.7
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.0e-10 71.6 199 32.2
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.3e-10 71.2 170 32.9
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 2.3e-10 70.5 142 35.2
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 3.9e-10 69.7 141 33.3
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 6.7e-10 68.9 50 56.0
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 6.7e-10 68.9 179 32.4
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 8.7e-10 68.6 185 31.4
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.5e-09 67.8 178 29.8
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 2.5e-09 67.0 144 31.9
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 2.5e-09 67.0 136 33.8
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 9.6e-09 65.1 149 33.6
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 8.1e-08 62.0 50 52.0
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 1.4e-07 61.2 155 36.1
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.8e-07 60.8 44 56.8
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.4e-07 60.5 43 58.1
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 2.4e-07 60.5 45 60.0
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.1e-07 60.1 35 68.6
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 3.1e-07 60.1 35 68.6
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 6.9e-07 58.9 37 56.8
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 6.9e-07 58.9 49 51.0
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 1.2e-06 58.2 97 37.1
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 2.6e-06 57.0 39 51.3
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 2.6e-06 57.0 32 65.6
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.6e-06 57.0 48 47.9
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 2.6e-06 57.0 52 44.2
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 3.4e-06 56.6 53 43.4
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 3.4e-06 56.6 53 43.4
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 4.5e-06 56.2 44 50.0
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 1.0e-05 55.1 31 61.3
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.0e-05 55.1 31 61.3


User provided reference genes

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