Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 2.7e-127 458.8 241 100.0
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 2.3e-107 392.5 236 84.7
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 1.7e-102 376.3 244 77.9
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 1.9e-101 372.9 244 79.9
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 7.8e-87 324.3 243 67.5
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 1.7e-81 306.6 245 64.5
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.9e-80 303.1 248 63.3
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 3.5e-79 298.9 247 64.4
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 6.0e-79 298.1 247 64.0
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 2.3e-78 296.2 245 62.4
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 3.0e-78 295.8 200 71.5
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 8.6e-78 294.3 244 60.2
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 8.6e-78 294.3 230 63.9
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 1.5e-77 293.5 247 60.3
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.9e-77 293.1 231 64.1
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 1.9e-77 293.1 239 62.8
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 1.9e-77 293.1 206 68.0
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 2.5e-77 292.7 218 63.8
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 2.5e-77 292.7 193 72.5
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.3e-77 292.4 230 63.5
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 5.6e-77 291.6 204 67.6
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 5.6e-77 291.6 230 62.6
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 7.3e-77 291.2 200 71.0
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 9.6e-77 290.8 230 62.6
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 1.2e-76 290.4 196 70.9
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 4.7e-76 288.5 249 59.0
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 1.8e-75 286.6 195 68.2
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 3.1e-75 285.8 194 69.6
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 3.1e-75 285.8 194 70.6
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 4.0e-75 285.4 196 68.4
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 5.2e-75 285.0 244 57.8
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 5.2e-75 285.0 253 58.9
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.5e-74 283.5 192 71.4
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 2.0e-74 283.1 236 60.6
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 3.4e-74 282.3 243 60.5
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 4.4e-74 282.0 237 61.2
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 7.6e-74 281.2 246 56.5
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 9.9e-74 280.8 242 58.3
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 1.7e-73 280.0 246 60.2
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.7e-73 280.0 192 68.2
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 2.9e-73 279.3 200 66.5
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 3.8e-73 278.9 194 67.5
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.9e-73 278.5 242 57.9
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 8.4e-73 277.7 230 59.1
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.1e-72 277.3 208 70.7
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 1.9e-72 276.6 194 67.5
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 3.2e-72 275.8 194 67.0
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 3.2e-72 275.8 251 59.0
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 4.2e-72 275.4 249 57.8
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 4.2e-72 275.4 195 68.2
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 7.1e-72 274.6 195 67.7
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 7.1e-72 274.6 196 65.3
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 9.3e-72 274.2 252 57.1
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 9.3e-72 274.2 195 67.7
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 9.3e-72 274.2 195 67.7
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 1.2e-71 273.9 193 65.8
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.6e-71 273.5 227 59.5
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.1e-71 273.1 193 67.4
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.1e-71 273.1 195 67.7
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 3.5e-71 272.3 248 64.1
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 3.5e-71 272.3 215 64.7
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 4.6e-71 271.9 222 67.6
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 4.6e-71 271.9 197 67.5
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.0e-70 270.8 194 63.9
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 1.7e-70 270.0 194 64.9
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 1.7e-70 270.0 199 66.3
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 2.3e-70 269.6 164 75.0
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 3.0e-70 269.2 251 55.4
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 5.1e-70 268.5 221 59.7
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 8.7e-70 267.7 217 63.6
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 2.5e-69 266.2 226 66.4
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 2.5e-69 266.2 194 64.4
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 4.3e-69 265.4 220 59.1
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 7.3e-69 264.6 194 63.9
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 9.6e-69 264.2 270 53.0
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.6e-68 263.5 227 59.0
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 4.8e-68 261.9 250 55.2
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 1.1e-67 260.8 196 62.2
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 1.4e-67 260.4 250 60.0
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 2.4e-67 259.6 159 76.1
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 3.1e-67 259.2 228 57.5
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 6.9e-67 258.1 312 47.4
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.5e-66 256.9 255 52.9
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 9.9e-66 254.2 298 48.3
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 2.9e-65 252.7 226 56.2
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 8.4e-65 251.1 221 60.2
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 1.9e-64 250.0 224 57.6
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 3.2e-64 249.2 249 58.6
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 4.2e-64 248.8 192 59.9
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 4.2e-64 248.8 224 57.1
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 4.2e-64 248.8 224 57.1
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 4.2e-64 248.8 224 57.1
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 4.2e-64 248.8 194 64.4
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 5.4e-64 248.4 224 61.2
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 3.5e-63 245.7 255 56.9
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 6.6e-62 241.5 191 58.1
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 8.7e-62 241.1 194 57.7
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 9.6e-61 237.7 242 50.4
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 1.3e-60 237.3 200 58.5
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 8.1e-60 234.6 270 46.3
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 4.9e-57 225.3 191 54.5
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 6.4e-57 224.9 254 46.5
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 6.4e-57 224.9 243 44.9
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 4.2e-56 222.2 191 55.0
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 4.2e-56 222.2 198 54.0
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 3.5e-55 219.2 198 53.5
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 3.9e-54 215.7 253 51.4
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.1e-51 207.6 222 50.5
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 1.2e-50 204.1 224 49.6
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 8.7e-46 188.0 191 46.1
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 3.4e-42 176.0 243 44.9
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 4.3e-37 159.1 188 41.0
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 4.5e-34 149.1 188 37.2
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 1.9e-32 143.7 94 69.1
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 1.4e-30 137.5 161 39.1
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 2.0e-21 107.1 151 35.8
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 3.5e-18 96.3 88 56.8
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 1.6e-15 87.4 109 47.7
Cre12.g551100 Chlamydomonas reinhardtii HOM05D006780 ORTHO05D008455 6.8e-06 55.5 126 29.4


User provided reference genes

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