Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 4.2e-57 224.6 121 100.0
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 4.8e-53 211.1 121 93.4
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 1.4e-52 209.5 120 93.3
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 5.3e-52 207.6 121 92.6
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 2.0e-51 205.7 121 92.6
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 2.2e-50 202.2 121 89.3
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-49 199.5 121 88.4
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.9e-49 199.1 121 88.4
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.5e-49 198.7 121 88.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 7.2e-49 197.2 119 87.4
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 9.4e-49 196.8 121 87.6
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 9.4e-49 196.8 119 87.4
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.8e-47 192.6 119 88.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 3.0e-47 191.8 106 97.2
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 3.0e-47 191.8 119 85.7
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 1.2e-46 189.9 121 82.6
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 4.4e-46 188.0 116 84.5
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 4.4e-46 188.0 119 84.0
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 5.7e-46 187.6 121 82.6
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 7.5e-46 187.2 125 84.0
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 7.5e-46 187.2 115 85.2
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 1.3e-45 186.4 121 81.8
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.7e-45 186.0 116 84.5
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.7e-45 186.0 119 80.7
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 2.8e-45 185.3 119 81.5
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 3.7e-45 184.9 119 81.5
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 4.8e-45 184.5 116 83.6
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 4.8e-45 184.5 117 84.6
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 8.3e-45 183.7 118 82.2
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 8.3e-45 183.7 119 81.5
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 1.1e-44 183.3 118 81.4
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 2.4e-44 182.2 118 80.5
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.4e-44 182.2 119 83.2
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.4e-44 182.2 119 83.2
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 4.1e-44 181.4 119 82.4
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 4.1e-44 181.4 119 79.0
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 4.1e-44 181.4 119 79.8
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 5.4e-44 181.0 117 81.2
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 5.4e-44 181.0 121 81.0
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 7.0e-44 180.6 114 82.5
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 7.0e-44 180.6 114 82.5
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 7.0e-44 180.6 117 80.3
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 7.0e-44 180.6 117 80.3
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 7.0e-44 180.6 121 81.0
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 7.0e-44 180.6 121 81.0
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 7.0e-44 180.6 119 79.8
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 9.1e-44 180.3 121 83.5
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.6e-43 179.5 121 81.0
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.6e-43 179.5 115 80.9
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.6e-43 179.5 116 83.6
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.0e-43 179.1 113 82.3
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-43 179.1 119 80.7
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-43 179.1 117 80.3
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.0e-43 179.1 117 80.3
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 3.5e-43 178.3 114 79.8
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.5e-43 178.3 118 80.5
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 5.9e-43 177.6 118 79.7
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 5.9e-43 177.6 118 79.7
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 5.9e-43 177.6 119 79.0
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 7.7e-43 177.2 119 79.0
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 1.3e-42 176.4 109 82.6
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.3e-42 176.4 114 79.8
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 1.7e-42 176.0 115 79.1
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 2.9e-42 175.3 118 81.4
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 6.5e-42 174.1 115 79.1
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 3.2e-41 171.8 116 77.6
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.2e-41 171.4 119 78.2
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 4.2e-41 171.4 119 78.2
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 4.2e-41 171.4 116 77.6
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.5e-41 171.0 117 78.6
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 2.1e-40 169.1 119 76.5
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.8e-40 168.7 114 75.4
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 4.7e-40 167.9 118 77.1
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 6.1e-40 167.5 119 76.5
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 8.0e-40 167.2 118 72.9
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.0e-39 166.8 115 76.5
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.4e-39 166.4 115 76.5
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.4e-39 166.4 101 84.2
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.4e-39 166.4 115 75.7
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.4e-39 166.4 114 77.2
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.3e-39 165.6 102 81.4
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.3e-39 165.6 111 77.5
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 3.0e-39 165.2 100 84.0
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-39 165.2 100 84.0
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-39 165.2 100 84.0
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 3.0e-39 165.2 100 84.0
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 6.8e-39 164.1 116 74.1
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 8.8e-39 163.7 119 71.4
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.2e-38 163.3 105 80.0
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 1.2e-38 163.3 100 83.0
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.2e-38 163.3 118 76.3
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.5e-38 162.9 116 75.0
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.5e-38 162.9 116 75.0
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.6e-38 162.2 115 72.2
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 3.4e-38 161.8 114 75.4
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 4.4e-38 161.4 116 73.3
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 4.4e-38 161.4 116 73.3
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 5.7e-38 161.0 116 71.6
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 7.5e-38 160.6 116 73.3
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 9.8e-38 160.2 103 77.7
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.7e-37 159.5 106 77.4
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 4.9e-37 157.9 116 75.0
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 4.9e-37 157.9 115 71.3
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 4.9e-37 157.9 125 68.8
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 6.3e-37 157.5 113 71.7
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 1.1e-36 156.8 115 72.2
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 1.1e-36 156.8 120 70.0
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.1e-36 156.8 112 68.8
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 2.4e-36 155.6 119 71.4
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 3.1e-36 155.2 120 69.2
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 7.0e-36 154.1 98 77.6
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 7.0e-36 154.1 114 71.9
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.6e-35 152.9 105 78.1
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 7.8e-35 150.6 115 71.3
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 7.8e-35 150.6 109 68.8
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 4.3e-33 144.8 121 66.9
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 9.5e-33 143.7 102 74.5
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 2.1e-32 142.5 96 74.0
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 6.1e-32 141.0 121 63.6
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 8.0e-32 140.6 89 85.4
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 8.0e-32 140.6 85 82.4
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.0e-31 140.2 101 73.3
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 1.8e-28 129.4 111 62.2
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.2e-27 126.7 83 78.3
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 5.9e-27 124.4 103 64.1
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.7e-26 122.9 87 75.9
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.7e-26 122.9 87 75.9
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.1e-25 120.2 111 60.4
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-23 112.8 71 80.3
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.5e-22 109.8 67 83.6
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 9.8e-22 107.1 69 78.3
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 8.3e-21 104.0 98 54.1
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.4e-20 103.2 68 76.5
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 5.4e-20 101.3 117 59.0
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.7e-19 99.0 74 71.6
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 4.6e-19 98.2 70 71.4
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 2.3e-18 95.9 64 68.8
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 8.6e-18 94.0 73 69.9
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-17 93.2 85 62.4
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 5.6e-17 91.3 50 94.0
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 6.2e-16 87.8 57 77.2
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-15 85.9 68 69.1
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 5.2e-15 84.7 56 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.5e-14 83.2 74 56.8
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 9.8e-14 80.5 103 46.6
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 9.8e-14 80.5 119 42.9
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 8.3e-13 77.4 82 56.1
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.0e-10 70.5 73 57.5
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.0e-10 70.5 56 64.3
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 1.0e-10 70.5 53 67.9
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 3.9e-10 68.6 60 60.0
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 6.6e-10 67.8 52 67.3
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 8.6e-10 67.4 75 53.3
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.1e-09 67.0 44 75.0
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 3.3e-09 65.5 121 37.2
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.8e-07 59.7 38 76.3
arahy.Tifrunner.gnm1.ann1.PK2YC0 Arachis hypogaea HOM05D002013 ORTHO05D021515 2.6e-06 55.8 46 65.2
arahy.Tifrunner.gnm1.ann1.LX64UG Arachis hypogaea HOM05D000103 ORTHO05D084991 7.6e-06 54.3 44 61.4


User provided reference genes

Program Settings