Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 1.7e-252 875.5 449 100.0
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 2.9e-228 795.0 445 93.0
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 1.3e-220 769.6 445 89.9
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.2e-218 763.1 445 88.3
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 9.4e-203 710.3 446 82.5
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 8.0e-202 707.2 454 81.5
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 2.2e-199 699.1 456 82.0
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.1e-198 696.8 446 83.2
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 4.0e-193 678.3 450 80.4
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 3.4e-192 675.2 431 82.6
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 4.4e-192 674.9 435 81.8
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 2.8e-178 629.0 444 74.5
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 5.8e-176 621.3 438 74.4
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 4.1e-174 615.1 446 74.0
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 3.5e-173 612.1 437 74.1
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 1.5e-171 606.7 423 74.7
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 2.5e-171 605.9 442 72.2
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 2.5e-171 605.9 424 75.7
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 7.3e-171 604.4 436 73.4
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 7.3e-171 604.4 437 74.4
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 9.5e-171 604.0 418 75.8
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 2.8e-170 602.4 444 72.3
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 8.0e-170 600.9 420 75.7
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.4e-169 600.1 444 71.6
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.1e-169 599.0 420 75.7
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 9.8e-168 594.0 408 76.0
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 3.7e-167 592.0 419 74.7
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 6.4e-167 591.3 431 72.9
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 2.4e-166 589.3 434 73.3
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 4.1e-166 588.6 438 71.0
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 4.1e-166 588.6 423 71.6
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 7.0e-166 587.8 441 72.3
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 1.2e-165 587.0 446 70.6
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.2e-165 587.0 419 74.9
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.2e-165 587.0 409 75.8
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 2.1e-165 586.3 422 73.5
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 2.1e-165 586.3 445 70.6
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 2.1e-165 586.3 423 73.8
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 1.3e-164 583.6 434 70.5
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.7e-164 583.2 436 72.2
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 5.1e-164 581.6 411 74.0
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 5.1e-164 581.6 422 73.0
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 1.2e-162 577.0 441 68.9
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.1e-162 576.2 406 76.1
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.1e-162 576.2 406 76.1
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 8.1e-162 574.3 447 70.9
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.4e-161 573.5 447 70.9
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.8e-161 573.2 436 69.3
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 3.1e-161 572.4 451 69.2
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 3.1e-161 572.4 451 69.2
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 5.2e-161 571.6 462 69.0
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 5.2e-161 571.6 406 74.9
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 1.2e-160 570.5 440 68.9
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 3.4e-160 568.9 429 69.7
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 7.5e-160 567.8 436 68.8
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.7e-159 566.6 445 67.9
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.2e-159 566.2 417 70.5
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.2e-159 566.2 417 70.5
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 2.9e-159 565.8 446 66.8
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 2.9e-159 565.8 444 68.5
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 3.7e-159 565.5 502 63.1
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 3.7e-159 565.5 428 70.1
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 4.9e-159 565.1 444 68.9
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 4.9e-159 565.1 412 70.9
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 8.3e-159 564.3 410 73.4
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.9e-158 563.1 485 64.1
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 7.8e-157 557.8 435 70.1
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.3e-156 557.0 403 71.7
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 2.5e-155 552.7 440 69.3
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 2.1e-154 549.7 429 67.1
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.8e-154 549.3 449 66.4
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 3.6e-154 548.9 439 68.1
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 8.1e-154 547.7 432 69.0
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 6.8e-153 544.7 438 68.5
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.3e-151 540.4 416 68.0
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 1.3e-151 540.4 417 68.6
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.3e-151 540.4 400 68.8
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 2.4e-150 536.2 416 68.0
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 5.4e-150 535.0 456 64.9
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 2.1e-149 533.1 456 64.7
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 4.6e-149 531.9 428 67.8
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 6.0e-149 531.6 444 65.3
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 3.9e-148 528.9 454 64.8
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 5.1e-148 528.5 440 64.8
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.1e-147 527.3 454 64.5
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.1e-147 527.3 455 63.5
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 1.5e-147 526.9 455 64.4
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 1.5e-147 526.9 414 68.1
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 4.3e-147 525.4 463 63.9
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 2.1e-146 523.1 439 65.1
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 2.8e-146 522.7 541 56.6
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 2.4e-145 519.6 404 68.3
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 6.9e-145 518.1 446 64.8
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 5.8e-144 515.0 410 67.3
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 2.9e-143 512.7 447 63.5
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.6e-141 506.9 428 65.0
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 3.0e-140 502.7 396 67.2
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 7.3e-139 498.0 428 64.5
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 6.4e-135 485.0 411 64.2
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 1.4e-134 483.8 489 55.0
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 6.7e-132 474.9 405 63.7
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 3.7e-130 469.2 325 76.9
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 6.9e-129 464.9 406 61.8
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.2e-128 464.2 371 67.9
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.2e-128 464.2 409 63.1
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 3.4e-128 462.6 399 60.7
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 4.5e-128 462.2 380 67.1
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 1.1e-126 457.6 459 57.3
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 1.9e-126 456.8 451 57.2
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.2e-126 455.7 400 60.2
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 9.3e-126 454.5 400 60.0
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.3e-124 450.7 406 63.3
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 4.0e-121 439.1 402 60.9
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.2e-120 437.6 418 58.1
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.6e-117 427.2 412 58.5
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 2.7e-117 426.4 377 60.5
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 3.0e-116 422.9 419 56.8
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.3e-115 419.5 412 56.3
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.7e-111 407.1 358 62.0
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.2e-111 406.8 368 59.2
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.8e-106 389.8 369 57.7
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 8.2e-106 388.3 376 57.7
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.1e-105 387.9 381 58.3
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.8e-105 387.1 369 56.1
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 1.2e-101 374.4 371 56.3
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 8.2e-98 361.7 618 40.5
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 1.6e-93 347.4 344 55.5
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 1.1e-91 341.3 302 63.9
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.8e-90 335.9 402 51.0
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 4.1e-89 332.8 293 63.5
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 4.1e-89 332.8 337 57.0
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 7.5e-83 312.0 317 54.9
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 4.1e-81 306.2 371 48.8
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 4.4e-75 286.2 277 57.4
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 8.9e-68 261.9 298 51.3
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.0e-67 260.8 291 50.9
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 1.2e-61 241.5 121 97.5
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 3.2e-57 226.9 252 54.0
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 4.6e-56 223.0 252 56.0
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 2.6e-51 207.2 192 58.9
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.5e-46 191.4 322 36.3
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 4.7e-45 186.4 239 46.9
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 8.9e-44 182.2 129 76.0
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 5.8e-43 179.5 158 67.1
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 1.3e-39 168.3 154 66.9
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 2.6e-35 154.1 122 73.0
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 3.9e-31 140.2 104 68.3
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 1.1e-28 132.1 168 49.4
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 1.2e-27 128.6 101 71.3
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 4.2e-25 120.2 161 47.8
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 6.0e-24 116.3 72 75.0
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 6.0e-24 116.3 144 48.6
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 2.5e-22 110.9 66 86.4
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.6e-21 107.1 98 57.1
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 6.2e-21 106.3 58 89.7
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 2.4e-20 104.4 71 77.5
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 1.5e-19 101.7 53 86.8
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.8e-19 99.8 71 63.4
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 4.9e-18 96.7 193 37.3
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 4.9e-18 96.7 51 88.2
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.1e-16 91.3 51 86.3
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.0e-15 89.0 51 84.3
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 3.0e-15 87.4 77 59.7
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.9e-15 87.0 55 78.2
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.6e-13 81.6 51 78.4
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 1.6e-13 81.6 61 65.6
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.1e-12 77.4 73 54.8
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 3.8e-10 70.5 44 79.5
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 1.6e-08 65.1 81 53.1
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 1.8e-07 61.6 97 48.5
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.3e-07 61.2 30 86.7
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.9e-07 60.5 36 83.3
TAR633G1805 Trochodendron aralioides HOM05D003179 ORTHO05D003563 3.3e-06 57.4 343 24.2


User provided reference genes

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