Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1582.4 835 100.0
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1551.2 835 97.6
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1493.4 835 93.8
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1482.2 835 93.1
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1457.2 836 91.6
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1446.8 835 90.4
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1443.7 835 91.0
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1428.3 836 90.1
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1421.0 836 90.0
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1404.4 835 88.9
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1375.5 835 87.1
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1364.0 838 85.1
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1357.4 836 84.8
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1356.7 838 84.7
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1350.5 839 84.5
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1347.4 836 84.2
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1341.3 840 84.0
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1337.4 836 83.6
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1333.5 836 84.1
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1331.6 838 82.8
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1330.1 841 83.6
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1329.3 839 84.1
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1326.2 840 82.6
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1325.5 836 83.5
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1323.1 836 83.0
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1322.8 835 82.5
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1317.8 837 84.5
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1316.6 837 82.4
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1315.1 837 82.1
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1314.7 839 82.1
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1310.0 839 81.8
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1309.3 839 81.3
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1308.9 837 82.4
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1307.7 839 81.6
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1306.6 838 80.9
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1303.9 839 81.0
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1301.6 839 81.3
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1296.2 841 80.9
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1289.6 859 79.5
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1288.9 839 81.0
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1288.9 839 80.3
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1286.6 841 80.3
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1285.4 839 80.7
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1283.5 839 80.2
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1282.7 840 79.6
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1275.0 837 79.0
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1272.3 833 80.9
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1270.4 845 79.1
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1265.0 928 73.5
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1260.0 838 79.2
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1254.6 837 78.0
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1253.4 837 77.9
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1253.4 837 77.7
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1251.1 837 77.9
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1248.0 838 77.9
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1245.7 840 77.1
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1245.3 838 77.6
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1242.3 835 76.9
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1242.3 839 77.1
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1242.3 839 77.6
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1239.6 834 78.2
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1239.2 837 77.2
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1239.2 838 77.1
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1238.0 842 78.3
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1236.1 837 77.5
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1236.1 835 77.7
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1226.5 838 76.1
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1223.4 838 76.3
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1221.8 856 75.2
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1220.7 839 76.2
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1218.4 856 75.0
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1218.0 839 75.9
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1217.6 840 76.2
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1216.8 843 76.0
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1216.1 840 76.3
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1216.1 840 76.1
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1215.3 840 75.8
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1214.9 840 76.0
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 835 75.9
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 837 75.3
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1204.5 854 75.5
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1202.6 837 75.7
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1196.8 838 75.1
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1195.6 839 74.5
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1195.6 854 75.4
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1194.5 838 73.5
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 0.0e+00 1192.9 680 90.9
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1191.4 837 73.8
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1184.5 834 78.3
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1181.0 804 77.4
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1172.1 840 73.1
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1147.9 859 71.7
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1146.0 864 72.8
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1140.2 838 72.1
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1136.3 724 82.3
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1135.2 746 79.5
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1133.6 997 63.2
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1085.5 838 67.7
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 1.0e-290 1003.4 720 71.2
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 1.0e-258 897.1 852 56.7
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 9.8e-254 880.6 860 56.2
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 9.8e-238 827.4 516 81.6
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 2.2e-237 826.2 833 53.5
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 1.4e-228 797.0 750 57.7
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 2.1e-227 793.1 603 69.0
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 4.7e-224 781.9 543 74.6
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 2.3e-223 779.6 544 74.8
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 6.2e-216 755.0 511 77.7
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 5.4e-212 741.9 617 66.3
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 5.6e-201 705.3 906 46.5
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 6.9e-191 671.8 427 83.4
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 3.2e-188 662.9 562 63.7
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 2.2e-181 640.2 445 78.4
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.0e-174 617.1 440 74.5
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 5.3e-159 565.8 343 84.8
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 5.3e-151 539.3 399 71.2
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 5.5e-140 502.7 382 71.2
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 1.1e-122 445.3 370 66.5
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 6.4e-120 436.0 341 68.0
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 7.0e-119 432.6 293 78.2
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 1.3e-109 401.7 424 55.4
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 5.8e-105 386.3 264 78.4
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 2.2e-104 384.4 232 82.8
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 2.2e-104 384.4 232 82.3
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 3.5e-102 377.1 856 32.4
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 9.3e-79 299.3 210 72.4
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 1.8e-74 285.0 859 27.7
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 7.4e-68 263.1 269 56.9
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.0e-64 252.7 230 61.7
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.7e-64 251.9 211 64.0
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 2.5e-60 238.0 179 71.5
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 3.7e-59 234.2 288 48.6
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 1.0e-53 216.1 210 64.3
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 8.8e-53 213.0 127 89.8
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 5.9e-49 200.3 130 75.4
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 2.5e-47 194.9 121 77.7
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 6.7e-45 186.8 105 94.3
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 5.0e-40 170.6 102 83.3
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 1.5e-39 169.1 139 64.7
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 9.4e-39 166.4 102 81.4
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 2.3e-37 161.8 95 78.9
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 3.0e-37 161.4 95 81.1
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 7.0e-34 150.2 97 77.3
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 9.1e-34 149.8 95 80.0
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 6.1e-30 137.1 95 72.6
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 8.0e-30 136.7 231 41.1
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 7.5e-28 130.2 95 70.5
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 3.1e-26 124.8 87 81.6
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 1.0e-24 119.8 176 43.2
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 2.8e-22 111.7 112 56.2
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 1.0e-21 109.8 82 69.5
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 4.0e-21 107.8 142 47.2
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 6.8e-21 107.1 92 65.2
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 4.4e-20 104.4 99 48.5
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.8e-19 101.7 72 79.2
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 8.3e-19 100.1 245 33.1
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 3.5e-17 94.7 133 51.1
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 2.2e-11 75.5 97 47.4
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 1.1e-10 73.2 149 34.9
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 3.9e-08 64.7 67 53.7


User provided reference genes

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