Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 2.9e-160 568.9 322 100.0
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 9.5e-156 553.9 325 96.9
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 5.8e-153 544.7 322 96.6
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.2e-147 526.9 326 92.3
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 6.4e-136 488.0 327 83.2
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 6.9e-130 468.0 338 83.4
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 6.9e-130 468.0 338 83.4
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 3.8e-128 462.2 325 81.8
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 4.8e-123 445.3 322 80.4
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.9e-120 436.0 324 76.2
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 3.5e-118 429.1 323 78.3
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 2.1e-115 419.9 329 76.6
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.8e-115 419.5 332 76.8
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 6.2e-115 418.3 335 76.7
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.8e-114 416.8 331 75.8
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 4.0e-114 415.6 252 84.5
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 6.9e-114 414.8 330 73.6
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.2e-113 414.1 329 78.1
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 4.5e-113 412.1 325 75.1
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 1.0e-112 411.0 346 72.5
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 2.2e-112 409.8 321 70.1
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 2.2e-112 409.8 327 76.1
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 3.8e-112 409.1 335 78.2
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 3.8e-112 409.1 328 76.8
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 2.5e-111 406.4 327 76.1
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 7.1e-111 404.8 323 74.6
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 4.6e-110 402.1 327 75.8
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 7.9e-110 401.4 325 74.5
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 2.3e-109 399.8 245 84.5
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.0e-109 399.4 331 74.6
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 3.9e-109 399.1 324 75.0
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 6.7e-109 398.3 330 74.8
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 8.7e-109 397.9 331 76.1
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 3.7e-107 392.5 334 72.5
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 6.3e-107 391.7 329 75.1
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 1.8e-106 390.2 327 71.6
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 1.8e-106 390.2 249 82.3
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 6.9e-106 388.3 332 71.7
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 6.9e-106 388.3 327 74.6
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 2.0e-105 386.7 329 70.5
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.3e-104 384.0 329 68.7
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.7e-104 383.6 326 68.1
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.2e-104 383.3 347 70.6
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 2.9e-104 382.9 339 67.0
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 8.5e-104 381.3 342 66.1
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 8.5e-104 381.3 327 71.3
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.4e-103 380.6 339 66.7
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 1.9e-103 380.2 343 65.9
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 1.9e-103 380.2 343 65.9
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.2e-103 379.4 367 68.9
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 5.5e-103 378.6 335 68.1
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 7.2e-103 378.3 330 67.3
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.6e-102 377.1 334 67.4
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 2.7e-102 376.3 325 72.9
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 6.1e-102 375.2 325 70.8
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.0e-101 374.4 339 65.2
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 2.3e-101 373.2 324 71.9
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.1e-100 370.9 329 72.9
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 2.5e-100 369.8 333 66.7
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 2.2e-99 366.7 328 64.3
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 2.8e-99 366.3 330 65.5
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 2.8e-99 366.3 330 65.5
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.8e-99 366.3 242 79.8
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 6.3e-99 365.2 326 70.9
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.8e-98 363.6 334 62.0
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 2.4e-98 363.2 330 70.6
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 6.9e-98 361.7 327 71.3
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 9.1e-98 361.3 329 64.7
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 3.4e-97 359.4 324 67.0
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 3.4e-97 359.4 331 63.7
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.3e-96 357.5 331 69.2
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 2.9e-96 356.3 217 88.5
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 5.0e-96 355.5 330 69.4
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 1.4e-95 354.0 323 62.5
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 2.5e-95 353.2 327 66.1
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 1.2e-94 350.9 254 70.5
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 2.1e-94 350.1 253 75.1
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.7e-94 349.7 341 63.0
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 1.0e-93 347.8 323 62.5
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.3e-93 346.7 329 69.9
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 3.9e-93 345.9 329 66.6
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 5.1e-93 345.5 332 66.6
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 6.7e-93 345.1 250 73.2
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 1.1e-92 344.4 343 62.7
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 2.6e-92 343.2 336 61.0
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 7.4e-92 341.7 249 74.7
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 9.7e-92 341.3 287 65.9
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 2.2e-91 340.1 325 61.5
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 6.3e-91 338.6 329 62.9
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 4.1e-90 335.9 216 80.6
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 7.7e-89 331.6 215 82.8
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 5.5e-87 325.5 214 82.7
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 4.7e-86 322.4 205 83.9
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 2.8e-83 313.2 326 57.7
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 3.5e-81 306.2 261 68.6
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 1.3e-80 304.3 241 67.6
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 2.2e-80 303.5 249 66.7
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 5.0e-80 302.4 401 56.1
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.2e-78 297.7 227 71.8
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 8.8e-77 291.6 298 55.0
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.0e-76 290.4 359 54.6
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 2.0e-76 290.4 231 72.3
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 2.6e-76 290.0 348 56.6
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 5.7e-76 288.9 322 53.7
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 8.2e-75 285.0 245 65.3
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 7.0e-74 282.0 189 81.0
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 7.0e-74 282.0 325 54.5
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 1.2e-73 281.2 243 64.2
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.7e-73 280.0 241 63.1
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 2.2e-72 276.9 337 56.7
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 5.0e-72 275.8 335 55.8
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 3.0e-69 266.5 218 74.8
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.7e-67 260.8 334 58.1
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 6.3e-67 258.8 326 51.5
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.4e-66 257.7 338 53.0
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 2.4e-66 256.9 333 53.2
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-65 254.6 258 58.1
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.2e-65 254.6 258 58.1
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 2.7e-65 253.4 340 51.5
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 1.7e-64 250.8 339 56.9
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-62 244.6 261 56.7
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-62 244.6 261 56.7
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 2.8e-62 243.4 261 56.7
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 8.3e-59 231.9 257 55.6
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 9.5e-55 218.4 149 79.9
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 2.0e-52 210.7 262 47.7
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 6.4e-51 205.7 213 63.8
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 8.3e-43 178.7 132 76.5
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 4.3e-39 166.4 102 85.3
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.5e-36 157.9 220 49.1
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 6.6e-32 142.5 109 74.3
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 1.4e-29 134.8 157 45.9
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.9e-27 127.1 216 44.4
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 5.4e-26 122.9 284 35.2
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 7.1e-26 122.5 136 45.6
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.0e-24 118.6 114 67.5
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 1.4e-21 108.2 158 39.9
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.4e-21 108.2 124 46.0
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 9.0e-21 105.5 111 71.2
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 3.4e-20 103.6 128 41.4
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.8e-20 102.8 126 42.1
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 7.6e-20 102.4 115 72.2
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 9.3e-18 95.5 121 62.8
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 7.8e-17 92.4 134 53.0
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 3.9e-16 90.1 141 56.7
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.1e-13 82.0 45 73.3
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 1.1e-13 82.0 111 48.6
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.3e-08 64.3 35 82.9
Os12g0465800 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D049646 7.4e-07 59.3 110 59.1
Os04g0392300 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.6e-06 58.2 127 32.3
Zm00001eb132960 Zea mays HOM05D004645 ORTHO05D049646 2.8e-06 57.4 109 59.6
Oeu057736.1 Olea europaea HOM05D004645 ORTHO05D005693 6.2e-06 56.2 119 37.0
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 8.1e-06 55.8 100 46.0


User provided reference genes

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