Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.8e-61 239.6 173 100.0
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 2.2e-59 232.6 173 88.4
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 5.3e-53 211.5 173 88.4
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 2.5e-50 202.6 173 86.1
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 3.2e-50 202.2 174 73.0
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 1.0e-48 197.2 174 86.8
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 1.0e-48 197.2 174 86.8
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.3e-48 196.1 174 82.8
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 5.1e-48 194.9 174 75.3
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 5.1e-48 194.9 174 83.9
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 2.5e-47 192.6 173 68.2
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 1.1e-45 187.2 174 82.8
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 1.7e-43 179.9 174 81.0
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 2.5e-42 176.0 172 78.5
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 7.2e-42 174.5 175 79.4
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.0e-40 170.6 165 68.5
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 8.8e-40 167.5 164 67.1
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.1e-39 167.2 175 64.6
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 1.5e-39 166.8 174 78.2
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 2.0e-39 166.4 173 75.7
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 2.5e-39 166.0 175 62.9
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 4.3e-39 165.2 174 75.9
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 5.7e-39 164.9 174 77.6
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 7.4e-39 164.5 163 68.7
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 7.4e-39 164.5 174 60.9
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.4e-39 164.5 174 60.9
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.4e-39 164.5 174 60.9
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 9.7e-39 164.1 164 65.9
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.3e-38 163.7 174 60.9
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.2e-38 162.9 174 62.1
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 2.8e-38 162.5 173 73.4
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 3.7e-38 162.2 170 74.7
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.7e-38 162.2 174 65.5
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 4.8e-38 161.8 174 73.0
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 6.3e-38 161.4 177 49.2
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 6.3e-38 161.4 174 75.9
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 8.2e-38 161.0 182 76.4
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.1e-37 160.6 165 77.6
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 1.1e-37 160.6 159 66.7
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.4e-37 160.2 165 70.3
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.8e-37 159.8 165 77.6
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 1.8e-37 159.8 165 77.6
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 2.4e-37 159.5 163 68.1
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.1e-37 158.7 175 74.9
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 5.3e-37 158.3 172 65.1
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 6.9e-37 157.9 170 62.4
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.2e-36 157.1 159 64.2
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 1.2e-36 157.1 159 65.4
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 2.0e-36 156.4 164 66.5
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 2.0e-36 156.4 179 77.7
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 2.6e-36 156.0 172 62.8
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.6e-36 156.0 164 65.9
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 5.9e-36 154.8 172 61.6
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.9e-36 154.8 170 72.4
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 7.7e-36 154.5 159 74.2
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.0e-35 154.1 170 70.6
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 1.0e-35 154.1 159 75.5
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.3e-35 153.7 170 71.2
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 2.2e-35 152.9 159 67.3
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 2.2e-35 152.9 175 60.6
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.9e-35 152.5 172 64.0
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 3.8e-35 152.1 156 73.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 6.5e-35 151.4 159 66.0
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 8.5e-35 151.0 158 64.6
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.1e-34 150.6 164 73.2
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.9e-34 149.8 173 59.5
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.9e-34 149.8 160 75.0
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 158 78.5
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 158 78.5
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 1.9e-34 149.8 171 69.0
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 2.5e-34 149.4 164 75.0
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.5e-34 149.4 172 63.4
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 3.2e-34 149.1 159 57.2
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 4.2e-34 148.7 159 76.1
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 4.2e-34 148.7 162 73.5
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 7.2e-34 147.9 160 66.2
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 9.4e-34 147.5 152 72.4
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.6e-33 146.7 153 64.7
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 1.6e-33 146.7 174 68.4
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 1.6e-33 146.7 175 71.4
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 2.1e-33 146.4 167 73.1
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 2.1e-33 146.4 170 76.5
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 3.6e-33 145.6 168 59.5
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.6e-33 145.6 172 62.8
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 3.6e-33 145.6 172 62.8
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 6.1e-33 144.8 158 74.1
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 6.1e-33 144.8 159 74.2
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 6.1e-33 144.8 172 62.8
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 7.9e-33 144.4 163 60.1
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.0e-32 144.1 162 61.1
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 1.0e-32 144.1 175 60.6
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.8e-32 143.3 176 74.4
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 3.9e-32 142.1 176 72.7
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 5.1e-32 141.7 177 72.3
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 6.7e-32 141.4 159 74.8
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 6.7e-32 141.4 175 61.7
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 6.7e-32 141.4 170 58.8
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.8e-32 141.0 155 63.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 8.8e-32 141.0 177 61.0
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.1e-31 140.6 176 68.8
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.1e-31 140.6 182 58.2
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 2.0e-31 139.8 175 58.3
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 5.7e-31 138.3 174 70.7
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 7.4e-31 137.9 177 71.8
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 9.7e-31 137.5 173 59.0
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.2e-30 136.3 165 58.2
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.2e-30 136.3 165 58.2
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.2e-30 136.3 165 58.2
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 2.8e-30 136.0 176 68.8
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 8.2e-30 134.4 176 68.8
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 1.1e-29 134.0 176 68.2
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 1.1e-29 134.0 176 68.2
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.4e-29 133.7 167 65.9
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.4e-29 133.7 159 49.1
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.8e-29 133.3 163 73.0
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 3.1e-29 132.5 177 67.2
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 3.1e-29 132.5 153 76.5
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 4.1e-29 132.1 138 70.3
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 2.0e-28 129.8 159 57.2
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 2.6e-28 129.4 229 36.7
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 3.5e-28 129.0 174 55.2
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 5.9e-28 128.3 164 47.0
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 1.3e-27 127.1 169 66.3
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.9e-27 125.9 173 41.0
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 2.9e-27 125.9 144 61.1
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 5.0e-27 125.2 143 60.1
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.1e-26 124.0 155 74.2
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.6e-25 119.0 159 53.5
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 1.0e-24 117.5 169 50.3
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 2.3e-24 116.3 167 42.5
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.8e-24 114.4 170 41.2
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.5e-23 113.6 126 79.4
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 2.0e-23 113.2 170 40.6
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 2.0e-23 113.2 153 43.1
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 4.4e-23 112.1 132 61.4
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 7.5e-23 111.3 172 39.5
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 1.2e-20 104.0 126 60.3
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 1.3e-19 100.5 129 60.5
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 2.5e-18 96.3 135 56.3
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 5.5e-18 95.1 121 60.3
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 9.4e-18 94.4 81 58.0
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 6.8e-16 88.2 101 72.3
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 8.8e-16 87.8 87 77.0
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.5e-15 87.0 111 61.3
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 1.3e-14 84.0 116 35.3
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 3.7e-14 82.4 152 48.7
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 3.8e-11 72.4 79 72.2
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 8.5e-11 71.2 78 46.2
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 8.5e-11 71.2 44 70.5
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 3.6e-09 65.9 48 58.3
arahy.Tifrunner.gnm1.ann1.6NYM2I Arachis hypogaea HOM05D000336 ORTHO05D023213 2.6e-07 59.7 45 71.1


User provided reference genes

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