Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 8.7e-81 304.3 250 100.0
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 2.4e-67 259.6 252 89.7
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 2.1e-63 246.5 249 86.7
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 1.8e-57 226.9 254 82.3
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 1.3e-55 220.7 260 78.8
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 6.7e-49 198.4 258 77.1
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 2.2e-47 193.4 263 74.5
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 4.5e-37 159.1 251 71.3
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 2.5e-35 153.3 251 70.1
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 7.2e-35 151.8 260 66.9
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 7.2e-35 151.8 260 66.9
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 1.6e-34 150.6 264 67.4
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 2.7e-34 149.8 271 66.1
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 4.7e-34 149.1 235 71.9
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 7.9e-34 148.3 295 62.4
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 6.7e-33 145.2 256 69.1
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 3.3e-32 142.9 239 70.7
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 1.7e-31 140.6 235 70.2
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 4.8e-31 139.0 251 68.5
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 8.2e-31 138.3 216 72.2
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 5.3e-30 135.6 242 69.4
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 9.1e-30 134.8 185 80.5
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 3.5e-29 132.9 269 64.7
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 5.9e-29 132.1 236 69.5
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 2.9e-28 129.8 252 64.7
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 8.5e-28 128.3 252 65.9
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 1.5e-27 127.5 253 62.8
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 1.5e-27 127.5 236 69.9
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 1.9e-27 127.1 248 62.9
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 1.9e-27 127.1 248 65.3
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 5.5e-27 125.6 254 64.6
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.2e-26 124.4 253 62.5
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 2.7e-26 123.2 251 51.0
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 2.7e-26 123.2 251 63.7
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 4.7e-26 122.5 254 63.8
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 1.8e-25 120.6 242 67.4
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 1.8e-25 120.6 250 63.2
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 3.0e-25 119.8 240 63.8
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 3.0e-25 119.8 244 65.6
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 4.0e-25 119.4 238 65.5
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 1.2e-24 117.9 238 67.6
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 1.5e-24 117.5 254 61.0
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 1.5e-24 117.5 249 61.8
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 5.7e-24 115.5 236 67.4
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 7.5e-24 115.2 250 61.6
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 7.5e-24 115.2 253 62.8
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.7e-23 114.0 247 60.7
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 1.7e-23 114.0 236 67.4
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 4.8e-23 112.5 252 61.1
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 6.3e-23 112.1 247 62.8
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 6.3e-23 112.1 256 62.9
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 6.3e-23 112.1 236 66.9
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 8.2e-23 111.7 252 61.1
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 8.2e-23 111.7 252 61.1
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 8.2e-23 111.7 79 70.9
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 1.1e-22 111.3 251 59.4
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.1e-22 111.3 251 59.8
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 2.4e-22 110.2 240 62.1
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.4e-22 110.2 253 61.7
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 5.3e-22 109.0 242 61.2
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 5.3e-22 109.0 254 61.8
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 1.6e-21 107.5 70 75.7
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 2.0e-21 107.1 240 62.9
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 2.7e-21 106.7 82 67.1
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 3.5e-21 106.3 81 66.7
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 4.5e-21 105.9 267 61.8
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 4.5e-21 105.9 244 63.1
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 4.5e-21 105.9 74 70.3
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 4.5e-21 105.9 294 57.5
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 5.9e-21 105.5 72 69.4
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 7.7e-21 105.1 71 73.2
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 1.3e-20 104.4 68 76.5
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 1.3e-20 104.4 246 61.4
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 1.3e-20 104.4 246 61.4
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 1.3e-20 104.4 249 59.8
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 2.2e-20 103.6 68 75.0
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 2.2e-20 103.6 273 59.0
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 2.9e-20 103.2 257 47.1
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 3.8e-20 102.8 255 58.0
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 3.8e-20 102.8 250 62.4
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 5.0e-20 102.4 240 63.3
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 5.0e-20 102.4 240 63.3
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 5.0e-20 102.4 246 61.0
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 6.5e-20 102.1 240 62.5
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 1.1e-19 101.3 203 49.8
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 1.5e-19 100.9 294 54.1
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 1.9e-19 100.5 68 73.5
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 3.2e-19 99.8 236 65.3
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 5.5e-19 99.0 287 54.7
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 5.5e-19 99.0 250 60.4
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 1.6e-18 97.4 244 61.5
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 1.4e-17 94.4 245 49.0
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 1.4e-17 94.4 252 61.5
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 3.0e-17 93.2 250 57.2
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 5.2e-17 92.4 79 58.2
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 5.2e-17 92.4 237 62.0
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 8.8e-17 91.7 237 59.9
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 1.3e-15 87.8 236 62.3
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 1.1e-14 84.7 72 61.1
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 1.4e-14 84.3 203 68.0
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 9.1e-14 81.6 201 66.7
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 1.2e-13 81.3 67 59.7
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 7.7e-13 78.6 68 60.3
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 7.7e-13 78.6 269 56.1
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 6.5e-12 75.5 68 58.8
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 3.2e-11 73.2 215 62.8
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 5.2e-09 65.9 279 51.3
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 3.4e-08 63.2 60 51.7
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 4.4e-08 62.8 196 63.3
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 1.8e-06 57.4 44 61.4
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 4.1e-06 56.2 384 40.4


User provided reference genes

Program Settings