Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G211800 Glycine max HOM05D003272 ORTHO05D003776 5.5e-268 927.2 501 100.0
Glyma.03G146500 Glycine max HOM05D003272 ORTHO05D003776 8.8e-234 813.5 447 99.6
Glyma.19G149800 Glycine max HOM05D003272 ORTHO05D003776 2.5e-220 768.8 445 94.8
Phvul.001G144300 Phaseolus vulgaris HOM05D003272 ORTHO05D003776 7.8e-198 694.1 446 85.9
Lalb_Chr18g0048041 Lupinus albus HOM05D003272 ORTHO05D003776 1.9e-188 662.9 452 79.2
Lj1g0008912 Lotus japonicus HOM05D003272 ORTHO05D003776 2.8e-187 659.1 452 80.3
Lalb_Chr04g0259561 Lupinus albus HOM05D003272 ORTHO05D003776 7.6e-185 651.0 451 78.9
Ca_08539_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 2.9e-184 649.0 454 79.5
arahy.Tifrunner.gnm1.ann1.VD9RJB Arachis hypogaea HOM05D003272 ORTHO05D003776 7.1e-183 644.4 456 78.9
arahy.Tifrunner.gnm1.ann1.LQ935E Arachis hypogaea HOM05D003272 ORTHO05D003776 1.2e-182 643.7 456 78.9
TPR.G13362 Trifolium pratense HOM05D003272 ORTHO05D003776 1.1e-180 637.1 454 78.4
Lalb_Chr15g0079101 Lupinus albus HOM05D003272 ORTHO05D003776 1.7e-176 623.2 450 78.4
Psat3g067560 Pisum sativum HOM05D003272 ORTHO05D003776 1.1e-175 620.5 454 77.3
Medtr7g093630 Medicago truncatula HOM05D003272 ORTHO05D003776 4.2e-175 618.6 454 76.0
TPR.G30306 Trifolium pratense HOM05D003272 ORTHO05D003776 5.1e-173 611.7 447 75.2
Medtr1g054355 Medicago truncatula HOM05D003272 ORTHO05D003776 2.4e-167 592.8 447 74.3
Glyma.09G109000 Glycine max HOM05D003272 ORTHO05D003776 1.5e-161 573.5 463 71.5
Phvul.007G261300 Phaseolus vulgaris HOM05D003272 ORTHO05D003776 1.3e-160 570.5 461 71.6
VMungo0720G0611 Vigna mungo HOM05D003272 ORTHO05D003776 3.8e-160 568.9 461 70.9
Glyma.02G170900 Glycine max HOM05D003272 ORTHO05D003776 1.3e-157 560.5 462 69.3
Potri.016G060200 Populus trichocarpa HOM05D003272 ORTHO05D003776 1.3e-157 560.5 446 71.7
Ca_12034_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 1.9e-156 556.6 469 69.5
Ca_12036_v3 Cicer arietinum L. HOM05D003272 ORTHO05D003776 1.9e-156 556.6 469 69.5
MD14G1054100 Malus domestica HOM05D003272 ORTHO05D003776 7.4e-156 554.7 447 70.2
Ciclev10010926m.g Citrus clementina HOM05D003272 ORTHO05D003776 2.1e-155 553.1 454 70.3
Prupe.7G081000 Prunus persica HOM05D003272 ORTHO05D003776 1.8e-154 550.1 448 71.4
Psat0s4022g0120 Pisum sativum HOM05D003272 ORTHO05D003776 2.4e-154 549.7 448 71.4
GSVIVG01033469001 Vitis vinifera HOM05D003272 ORTHO05D003776 3.4e-153 545.8 448 70.5
QL07p024475 Quercus lobata HOM05D003272 ORTHO05D003776 3.0e-149 532.7 454 69.8
CiPaw.09G028500 Carya illinoinensis HOM05D003272 ORTHO05D003776 1.1e-148 530.8 460 68.3
Potri.006G194500 Populus trichocarpa HOM05D003272 ORTHO05D003776 1.1e-148 530.8 446 68.4
Thecc.05G174800 Theobroma cacao HOM05D003272 ORTHO05D003776 5.7e-148 528.5 452 69.7
Dinv16344 Davidia involucrata HOM05D003272 ORTHO05D003776 5.3e-146 521.9 446 68.6
Sabra06G0149200 Salix brachista HOM05D003272 ORTHO05D003776 9.0e-146 521.2 459 68.4
CiPaw.10G025200 Carya illinoinensis HOM05D003272 ORTHO05D003776 1.2e-145 520.8 447 70.9
RcHm_v2.0_Chr3g0479241 Rosa chinensis HOM05D003272 ORTHO05D003776 2.0e-145 520.0 447 68.9
Manes.09G037500 Manihot esculenta HOM05D003272 ORTHO05D003776 3.4e-145 519.2 452 67.7
Gohir.D04G097200 Gossypium hirsutum HOM05D003272 ORTHO05D003776 4.5e-145 518.8 452 68.4
Atru.chr8.1154 Acer truncatum HOM05D003272 ORTHO05D003776 7.7e-145 518.1 453 67.3
FvH4_6g21890 Fragaria vesca HOM05D003272 ORTHO05D003776 1.6e-142 510.4 469 66.7
Cpa.g.sc85.47 Carica papaya HOM05D003272 ORTHO05D003776 2.1e-142 510.0 444 68.9
FAN02G4424 Fragaria x ananassa HOM05D003272 ORTHO05D003776 7.9e-142 508.1 468 66.9
Cfa020144 Carpinus fangiana HOM05D003272 ORTHO05D003776 1.0e-141 507.7 453 68.4
Manes.08G042700 Manihot esculenta HOM05D003272 ORTHO05D003776 1.4e-141 507.3 452 67.5
Gohir.A04G054400 Gossypium hirsutum HOM05D003272 ORTHO05D003776 6.7e-141 505.0 452 66.8
Sabra16G0063100 Salix brachista HOM05D003272 ORTHO05D003776 6.7e-141 505.0 476 58.6
CANSAT64G1991 Cannabis sativa HOM05D003272 ORTHO05D003776 1.1e-140 504.2 456 65.8
TWI77G0466 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 3.3e-140 502.7 433 69.1
Dinv24041 Davidia involucrata HOM05D003272 ORTHO05D003776 3.7e-139 499.2 447 65.3
FAN05G4520 Fragaria x ananassa HOM05D003272 ORTHO05D003776 4.8e-139 498.8 446 67.3
Gorai.013G213300 Gossypium raimondii HOM05D003272 ORTHO05D003776 6.3e-139 498.4 450 64.7
Gorai.002G155500 Gossypium raimondii HOM05D003272 ORTHO05D003776 1.8e-138 496.9 444 67.1
FAN09G3998 Fragaria x ananassa HOM05D003272 ORTHO05D003776 6.9e-138 495.0 468 65.2
Gohir.D01G124900 Gossypium hirsutum HOM05D003272 ORTHO05D003776 9.1e-138 494.6 444 66.9
Gohir.A01G137100 Gossypium hirsutum HOM05D003272 ORTHO05D003776 1.0e-136 491.1 444 66.2
Duzib093G2065 Durio zibethinus HOM05D003272 ORTHO05D003776 1.7e-136 490.3 451 66.1
FAN14G3195 Fragaria x ananassa HOM05D003272 ORTHO05D003776 6.5e-136 488.4 469 65.5
TWI74G0429 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 2.5e-135 486.5 444 66.7
PGR142G2098 Punica granatum HOM05D003272 ORTHO05D003776 9.4e-135 484.6 453 65.3
Duzib106G0166 Durio zibethinus HOM05D003272 ORTHO05D003776 1.8e-133 480.3 452 62.6
Rhsim04G0095400 Rhododendron simsii HOM05D003272 ORTHO05D003776 2.3e-133 479.9 447 62.6
COL.COLO4_29357 Corchorus olitorius HOM05D003272 ORTHO05D003776 5.1e-133 478.8 442 61.1
Cc06_g15520 Coffea canephora HOM05D003272 ORTHO05D003776 8.8e-133 478.0 452 65.5
TWI53G1277 Tripterygium wilfordii HOM05D003272 ORTHO05D003776 1.5e-132 477.2 431 65.9
MBI19_g17426_MAGBIO Magnolia biondii HOM05D003272 ORTHO05D003776 3.7e-131 472.6 449 62.6
Actinidia17288 Actinidia chinensis HOM05D003272 ORTHO05D003776 2.4e-130 469.9 446 63.9
Sc13g0002400 Simmondsia chinensis HOM05D003272 ORTHO05D003776 2.4e-130 469.9 480 60.8
Actinidia38598 Actinidia chinensis HOM05D003272 ORTHO05D003776 5.3e-130 468.8 449 64.4
Haze_20019 Corylus avellana HOM05D003272 ORTHO05D003776 7.0e-130 468.4 521 59.1
TAR369G0864 Trochodendron aralioides HOM05D003272 ORTHO05D003776 9.1e-130 468.0 451 65.9
CSS0044868 Camellia sinensis var. sinensis HOM05D003272 ORTHO05D003776 5.9e-129 465.3 436 66.1
Actinidia22066 Actinidia chinensis HOM05D003272 ORTHO05D003776 7.7e-129 464.9 459 64.7
THA.LOC104824482 Tarenaya hassleriana HOM05D003272 ORTHO05D003776 1.1e-127 461.1 441 62.6
Migut.J01867 Erythranthe guttata HOM05D003272 ORTHO05D003776 4.2e-127 459.1 447 62.6
Gorai.006G143700 Gossypium raimondii HOM05D003272 ORTHO05D003776 4.2e-127 459.1 433 58.0
CsaV3_4G031310 Cucumis sativus L. HOM05D003272 ORTHO05D003776 5.5e-127 458.8 433 64.4
Nn7g35964 Nelumbo nucifera HOM05D003272 ORTHO05D003776 5.5e-127 458.8 455 62.9
MELO3C009057.2 Cucumis melo HOM05D003272 ORTHO05D003776 9.4e-127 458.0 433 63.0
Sed0015981 Sechium edule HOM05D003272 ORTHO05D003776 3.6e-126 456.1 436 65.1
Aqoxy2G00092 Aquilegia oxysepala HOM05D003272 ORTHO05D003776 4.7e-126 455.7 461 59.7
AUR62015331 Chenopodium quinoa HOM05D003272 ORTHO05D003776 1.4e-125 454.1 446 55.4
THA.LOC104802668 Tarenaya hassleriana HOM05D003272 ORTHO05D003776 1.4e-125 454.1 449 61.5
vmacro22121 Vaccinium macrocarpon HOM05D003272 ORTHO05D003776 1.4e-125 454.1 463 60.7
SalBow6G0671 Salvia bowleyana HOM05D003272 ORTHO05D003776 5.2e-125 452.2 453 60.7
Gohir.A09G128800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 2.0e-124 450.3 437 61.3
MBI13_g29652_MAGBIO Magnolia biondii HOM05D003272 ORTHO05D003776 2.0e-124 450.3 448 62.9
Solyc10g079010.3 Solanum lycopersicum HOM05D003272 ORTHO05D003776 3.3e-124 449.5 472 61.0
Lj1C1133T6 Lonicera japonica HOM05D003272 ORTHO05D003776 9.7e-124 448.0 446 63.0
Sopen10g029630 Solanum pennellii HOM05D003272 ORTHO05D003776 2.8e-123 446.4 471 60.9
Gohir.D09G124800 Gossypium hirsutum HOM05D003272 ORTHO05D003776 3.7e-123 446.0 433 57.0
Sed0015373 Sechium edule HOM05D003272 ORTHO05D003776 8.2e-123 444.9 434 61.5
CAN.G960.20 Capsicum annuum HOM05D003272 ORTHO05D003776 4.1e-122 442.6 460 61.3
Peaxi162Scf00463g00423 Petunia axillaris HOM05D003272 ORTHO05D003776 5.3e-122 442.2 477 60.4
Rhsim03G0003200 Rhododendron simsii HOM05D003272 ORTHO05D003776 5.9e-121 438.7 444 61.7
AL5G39720 Arabidopsis lyrata HOM05D003272 ORTHO05D003776 1.0e-120 438.0 435 60.9
EL10Ac3g06883 Beta vulgaris HOM05D003272 ORTHO05D003776 1.0e-120 438.0 431 60.8
MSTRG.19926 Avicennia marina HOM05D003272 ORTHO05D003776 1.3e-120 437.6 451 61.9
Nitab4.5_0000009g0220 Nicotiana tabacum HOM05D003272 ORTHO05D003776 2.9e-120 436.4 512 55.5
Sp5g04670 Schrenkiella parvula HOM05D003272 ORTHO05D003776 5.0e-120 435.6 457 58.6
MSTRG.6497 Avicennia marina HOM05D003272 ORTHO05D003776 6.5e-120 435.3 441 61.9
Hund24815 Selenicereus undatus HOM05D003272 ORTHO05D003776 8.5e-120 434.9 444 58.8
TAR623G1173 Trochodendron aralioides HOM05D003272 ORTHO05D003776 1.9e-119 433.7 353 72.5
DCAR_013670 Daucus carota HOM05D003272 ORTHO05D003776 1.2e-118 431.0 457 60.8
vmacro22626 Vaccinium macrocarpon HOM05D003272 ORTHO05D003776 1.2e-118 431.0 450 60.0
CARHR168370 Cardamine hirsuta HOM05D003272 ORTHO05D003776 3.6e-118 429.5 436 61.0
SGA_v2.0_scaffold69G23041 Striga asiatica HOM05D003272 ORTHO05D003776 1.8e-117 427.2 444 60.6
Eucgr.K01852 Eucalyptus grandis HOM05D003272 ORTHO05D003776 6.7e-117 425.2 450 57.1
AT3G58050 Arabidopsis thaliana HOM05D003272 ORTHO05D003776 8.8e-117 424.9 438 58.4
Aa31LG10G12750 Aethionema arabicum HOM05D003272 ORTHO05D003776 9.7e-116 421.4 460 59.1
Nn2g15739 Nelumbo nucifera HOM05D003272 ORTHO05D003776 1.4e-114 417.5 237 86.5
Nitab4.5_0000358g0060 Nicotiana tabacum HOM05D003272 ORTHO05D003776 4.1e-114 416.0 447 60.4
ATR0598G091 Amborella trichopoda HOM05D003272 ORTHO05D003776 2.7e-113 413.3 456 57.5
Oeu046728.2 Olea europaea HOM05D003272 ORTHO05D003776 1.3e-112 411.0 456 58.8
ECA238G2479 Erigeron canadensis HOM05D003272 ORTHO05D003776 2.2e-112 410.2 440 60.0
ECA248G2064 Erigeron canadensis HOM05D003272 ORTHO05D003776 6.5e-112 408.7 448 57.4
PSO384G2805 Papaver somniferum HOM05D003272 ORTHO05D003776 5.5e-111 405.6 461 56.6
HanXRQChr14g0443181 Helianthus annuus HOM05D003272 ORTHO05D003776 9.4e-111 404.8 455 59.3
HanXRQChr14g0438261 Helianthus annuus HOM05D003272 ORTHO05D003776 1.6e-110 404.1 440 58.2
PSO339G1267 Papaver somniferum HOM05D003272 ORTHO05D003776 1.6e-110 404.1 461 56.4
DCAR_017040 Daucus carota HOM05D003272 ORTHO05D003776 8.0e-110 401.7 450 56.2
Lsat_1_v5_gn_1_60961 Lactuca sativa HOM05D003272 ORTHO05D003776 8.3e-107 391.7 450 58.9
Lsat_1_v5_gn_2_56141 Lactuca sativa HOM05D003272 ORTHO05D003776 2.4e-106 390.2 445 58.0
Sp4g24230 Schrenkiella parvula HOM05D003272 ORTHO05D003776 2.4e-106 390.2 430 57.4
Thhalv10016161m.g Eutrema salsugineum HOM05D003272 ORTHO05D003776 4.5e-105 386.0 437 56.5
AL4G40320 Arabidopsis lyrata HOM05D003272 ORTHO05D003776 3.8e-104 382.9 435 55.9
Carub.0004s2429 Capsella rubella HOM05D003272 ORTHO05D003776 2.5e-103 380.2 445 54.2
SEGI_10284 Sequoiadendron giganteum HOM05D003272 ORTHO05D003776 4.2e-103 379.4 463 55.9
Thhalv10016156m.g Eutrema salsugineum HOM05D003272 ORTHO05D003776 5.5e-103 379.0 437 54.9
unitig_0.g524 Utricularia gibba HOM05D003272 ORTHO05D003776 5.5e-103 379.0 237 75.1
AT2G41960 Arabidopsis thaliana HOM05D003272 ORTHO05D003776 9.5e-103 378.3 435 55.6
BraA05t19259Z Brassica rapa HOM05D003272 ORTHO05D003776 1.6e-102 377.5 437 55.6
BcaC02g12450 Brassica carinata HOM05D003272 ORTHO05D003776 1.1e-98 364.8 434 55.1
C04p03170 Brassica napus HOM05D003272 ORTHO05D003776 1.1e-98 364.8 434 55.1
Mapoly0087s0049 Marchantia polymorpha HOM05D003272 ORTHO05D003776 1.8e-98 364.0 238 75.6
AUR62012007 Chenopodium quinoa HOM05D003272 ORTHO05D003776 9.2e-98 361.7 449 47.9
Lj2C363G5 Lonicera japonica HOM05D003272 ORTHO05D003776 9.2e-98 361.7 452 47.8
SMO137G0342 Selaginella moellendorffii HOM05D003272 ORTHO05D003776 3.5e-97 359.8 238 75.2
HPP92_020307 Vanilla planifolia HOM05D003272 ORTHO05D003776 1.0e-96 358.2 237 71.7
Zm00001eb224410 Zea mays HOM05D003272 ORTHO05D003776 1.0e-96 358.2 237 75.1
A05p02660 Brassica napus HOM05D003272 ORTHO05D003776 2.3e-96 357.1 435 54.5
CARHR137060 Cardamine hirsuta HOM05D003272 ORTHO05D003776 8.6e-96 355.1 412 56.1
Nitab4.5_0002339g0030 Nicotiana tabacum HOM05D003272 ORTHO05D003776 3.6e-94 349.7 456 49.1
Zm00001eb025760 Zea mays HOM05D003272 ORTHO05D003776 1.8e-93 347.4 237 74.7
DCAR_019863 Daucus carota HOM05D003272 ORTHO05D003776 5.2e-93 345.9 448 50.2
BcaC02g12452 Brassica carinata HOM05D003272 ORTHO05D003776 1.2e-92 344.7 359 57.9
C04p03190 Brassica napus HOM05D003272 ORTHO05D003776 1.2e-92 344.7 359 57.9
BolC4t21957H Brassica oleracea HOM05D003272 ORTHO05D003776 1.2e-92 344.7 359 57.9
A05p02670 Brassica napus HOM05D003272 ORTHO05D003776 1.5e-92 344.4 361 57.6
MD12G1054800 Malus domestica HOM05D003272 ORTHO05D003776 1.5e-92 344.4 187 87.7
Peaxi162Scf00003g00473 Petunia axillaris HOM05D003272 ORTHO05D003776 1.5e-92 344.4 476 51.7
Aa31LG1G24170 Aethionema arabicum HOM05D003272 ORTHO05D003776 2.6e-92 343.6 419 53.2
Zm00001eb399270 Zea mays HOM05D003272 ORTHO05D003776 4.4e-92 342.8 239 71.1
Pp3c16_15960 Physcomitrium patens HOM05D003272 ORTHO05D003776 1.3e-91 341.3 238 68.1
Pp3c6_26480 Physcomitrium patens HOM05D003272 ORTHO05D003776 1.9e-90 337.4 238 69.3
CDE06G2439 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 4.1e-90 336.3 443 52.1
Peaxi162Scf00003g04726 Petunia axillaris HOM05D003272 ORTHO05D003776 1.8e-85 320.9 465 51.0
SalBow1G7043 Salvia bowleyana HOM05D003272 ORTHO05D003776 4.0e-85 319.7 189 80.4
ClCG04G000900 Citrullus lanatus HOM05D003272 ORTHO05D003776 6.8e-85 318.9 192 77.6
BcaB01g03430 Brassica carinata HOM05D003272 ORTHO05D003776 8.9e-85 318.5 239 62.8
BcaC01g05316 Brassica carinata HOM05D003272 ORTHO05D003776 1.7e-83 314.3 239 61.9
Ah.04g152770 Amaranthus hybridus HOM05D003272 ORTHO05D003776 4.1e-82 309.7 187 77.0
Os10g0105400 Oryza sativa ssp. japonica HOM05D003272 ORTHO05D003776 7.1e-82 308.9 237 68.4
C03p28030 Brassica napus HOM05D003272 ORTHO05D003776 1.6e-81 307.8 233 61.8
BolC3t15173H Brassica oleracea HOM05D003272 ORTHO05D003776 2.7e-81 307.0 233 61.8
DCAR_019865 Daucus carota HOM05D003272 ORTHO05D003776 7.8e-81 305.4 419 46.3
BraA03t11566Z Brassica rapa HOM05D003272 ORTHO05D003776 1.3e-80 304.7 233 61.4
A03p23500 Brassica napus HOM05D003272 ORTHO05D003776 1.5e-79 301.2 371 45.8
CDE07G0242 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 3.3e-79 300.1 189 73.5
AagrBONN_evm.TU.Sc2ySwM_344.2035 Anthoceros agrestis HOM05D003272 ORTHO05D003776 3.6e-78 296.6 220 72.3
DCAR_019864 Daucus carota HOM05D003272 ORTHO05D003776 3.4e-76 290.0 422 42.9
SHI31754 Sapria himalayana HOM05D003272 ORTHO05D003776 7.6e-76 288.9 238 60.5
Ah.13g075660 Amaranthus hybridus HOM05D003272 ORTHO05D003776 6.6e-72 275.8 481 43.7
Zm00001eb009880 Zea mays HOM05D003272 ORTHO05D003776 1.0e-64 251.9 187 66.8
Lj5g0000225 Lotus japonicus HOM05D003272 ORTHO05D003776 2.8e-38 164.1 283 48.4
ClCG04G000910 Citrullus lanatus HOM05D003272 ORTHO05D003776 1.1e-31 142.1 248 49.6
Peaxi162Scf00007g00424 Petunia axillaris HOM05D003272 ORTHO05D003776 2.0e-20 104.8 290 43.8
CDE07G1637 Ceratophyllum demersum HOM05D003272 ORTHO05D003776 7.4e-15 86.3 48 87.5
SEGI_19750 Sequoiadendron giganteum HOM05D003272 ORTHO05D003776 9.7e-15 85.9 276 41.7
Cre02.g087200 Chlamydomonas reinhardtii HOM05D003272 ORTHO05D003776 2.3e-08 64.7 132 37.1
TAR623G0308 Trochodendron aralioides HOM05D003272 ORTHO05D003776 2.2e-06 58.2 75 46.7


User provided reference genes

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