Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.0e-244 849.7 457 100.0
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 2.0e-232 808.9 457 95.6
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.6e-218 762.7 459 89.8
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 5.1e-188 661.4 457 77.7
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 2.1e-186 656.0 455 77.8
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 1.8e-185 652.9 457 75.7
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 2.4e-185 652.5 451 76.3
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 2.4e-185 652.5 457 75.7
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 3.1e-185 652.1 457 75.9
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 2.0e-184 649.4 456 75.4
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 2.6e-184 649.0 450 78.9
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 4.5e-184 648.3 456 78.5
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 5.8e-184 647.9 457 75.5
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 1.0e-183 647.1 457 75.9
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 2.9e-183 645.6 457 74.2
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.9e-183 645.6 450 77.1
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 4.9e-183 644.8 456 74.6
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 6.5e-183 644.4 458 75.1
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 1.4e-182 643.3 450 76.4
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 2.5e-182 642.5 457 74.4
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 5.5e-182 641.3 457 74.4
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 5.5e-182 641.3 457 74.8
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 9.3e-182 640.6 457 74.4
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 1.2e-181 640.2 440 76.8
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 3.5e-181 638.6 457 73.7
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 5.1e-180 634.8 436 76.8
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 5.1e-180 634.8 456 76.1
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 6.7e-180 634.4 457 74.0
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 6.7e-180 634.4 457 74.0
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 8.7e-180 634.0 453 75.3
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 8.7e-180 634.0 447 76.1
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 8.7e-180 634.0 447 76.1
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.1e-179 633.6 457 74.0
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 1.1e-179 633.6 436 75.9
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 1.1e-179 633.6 458 74.5
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.1e-179 633.6 449 76.4
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 1.1e-179 633.6 443 75.4
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.5e-179 633.3 455 75.2
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.9e-179 632.9 447 75.8
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 2.5e-179 632.5 457 73.7
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 4.3e-179 631.7 421 78.1
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 4.3e-179 631.7 421 78.1
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 7.4e-179 630.9 437 77.1
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 7.4e-179 630.9 421 78.1
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 7.4e-179 630.9 421 78.1
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.3e-178 630.2 458 74.2
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.3e-178 630.2 449 73.9
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.3e-178 630.2 459 75.2
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 1.3e-178 630.2 487 71.7
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.6e-178 629.8 443 76.1
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 2.1e-178 629.4 437 76.7
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 2.1e-178 629.4 459 73.9
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 2.1e-178 629.4 421 77.7
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 2.8e-178 629.0 456 74.8
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 3.7e-178 628.6 436 75.9
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 6.3e-178 627.9 457 72.2
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 8.2e-178 627.5 457 73.3
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.8e-177 626.3 437 76.4
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 2.4e-177 625.9 424 77.4
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 3.1e-177 625.5 438 75.6
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 3.1e-177 625.5 419 77.8
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 6.9e-177 624.4 458 73.4
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 9.0e-177 624.0 453 73.1
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 1.2e-176 623.6 458 74.0
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.5e-176 623.2 406 81.3
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 2.6e-176 622.5 511 67.9
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 4.5e-176 621.7 421 77.9
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 4.5e-176 621.7 440 75.0
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 1.0e-175 620.5 418 77.3
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.3e-175 620.2 436 75.5
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 1.7e-175 619.8 421 77.0
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 2.2e-175 619.4 458 72.9
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 2.2e-175 619.4 441 74.6
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 2.2e-175 619.4 456 72.1
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 3.8e-175 618.6 438 73.7
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 1.9e-174 616.3 440 73.9
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.1e-173 612.8 421 77.0
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 6.1e-173 611.3 447 73.4
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 7.9e-173 610.9 438 73.1
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 3.9e-172 608.6 418 75.6
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 6.7e-172 607.8 453 70.0
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 7.4e-171 604.4 455 72.1
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 7.4e-171 604.4 458 72.3
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.8e-170 602.4 421 74.6
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 2.8e-170 602.4 434 73.7
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 1.1e-169 600.5 416 76.2
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 3.1e-169 599.0 432 72.9
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 5.3e-169 598.2 433 73.4
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 2.6e-168 595.9 419 74.0
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 4.5e-168 595.1 431 73.1
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 1.0e-167 594.0 427 74.2
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.3e-167 593.6 444 72.3
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.3e-167 593.6 444 72.3
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 2.9e-167 592.4 499 65.1
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 6.5e-167 591.3 421 73.4
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.9e-166 589.7 405 75.8
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 2.7e-165 585.9 433 73.0
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 3.6e-165 585.5 421 72.4
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 4.6e-165 585.1 429 72.7
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 4.6e-165 585.1 432 71.5
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.4e-164 583.6 471 66.5
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 3.0e-164 582.4 449 69.9
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 3.0e-164 582.4 456 68.0
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 3.0e-164 582.4 456 68.0
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 6.7e-164 581.3 442 71.0
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 1.5e-163 580.1 419 71.1
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.6e-163 579.3 450 68.2
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 4.1e-161 572.0 417 72.9
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 7.7e-160 567.8 417 72.7
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 1.7e-159 566.6 410 73.7
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 3.0e-156 555.8 421 69.6
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 2.5e-150 536.2 429 68.8
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 7.2e-150 534.6 436 67.0
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 5.2e-148 528.5 458 65.1
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 1.3e-146 523.9 460 62.0
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 3.0e-132 476.1 417 60.4
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 2.4e-129 466.5 441 57.6
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 9.2e-129 464.5 437 56.5
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 5.6e-126 455.3 380 67.9
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 4.1e-113 412.5 367 60.2
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 6.2e-109 398.7 294 69.7
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 3.0e-103 379.8 269 71.4
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 4.7e-101 372.5 230 84.3
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 6.0e-96 355.5 413 48.7
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 1.3e-95 354.4 455 50.8
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 1.3e-77 294.7 436 41.1
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 2.0e-75 287.3 228 64.5
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.6e-72 276.2 295 57.3
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 8.7e-71 271.9 386 39.6
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 4.3e-70 269.6 175 84.6
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 1.4e-65 254.6 156 87.2
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 3.3e-62 243.4 410 34.4
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.4e-55 221.5 352 36.9
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 2.3e-55 220.7 216 56.5
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 6.3e-53 212.6 451 35.0
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 8.2e-53 212.2 162 68.5
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 8.2e-45 185.7 239 48.1
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 4.1e-36 156.8 126 60.3
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 3.7e-29 133.7 143 53.8
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 5.5e-25 119.8 101 65.3
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 5.2e-23 113.2 97 69.1
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 6.3e-21 106.3 85 62.4
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 2.4e-20 104.4 100 55.0
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 2.3e-18 97.8 393 24.4
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 2.6e-14 84.3 92 50.0
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 1.3e-13 82.0 422 25.6
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 4.5e-11 73.6 221 28.5
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.2e-06 58.9 67 55.2


User provided reference genes

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