Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 2.6e-69 265.4 144 100.0
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.7e-52 209.5 110 96.4
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 2.2e-52 209.1 110 96.4
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 6.4e-52 207.6 110 95.5
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.8e-51 206.1 110 92.7
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 4.1e-51 204.9 110 93.6
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 9.2e-51 203.8 110 92.7
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 2.7e-50 202.2 123 83.7
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.0e-49 200.3 110 91.8
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.3e-49 199.9 110 88.2
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.7e-49 199.5 110 91.8
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.7e-49 199.5 110 91.8
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 2.3e-49 199.1 110 90.9
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 2.3e-49 199.1 110 90.9
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 2.3e-49 199.1 110 90.0
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 3.0e-49 198.7 110 90.9
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 3.0e-49 198.7 110 90.9
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 3.0e-49 198.7 110 90.9
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.0e-49 198.7 110 90.9
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.0e-49 198.7 110 90.9
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 3.0e-49 198.7 110 90.0
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 3.9e-49 198.4 110 90.9
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 5.0e-49 198.0 110 90.0
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 5.0e-49 198.0 110 90.0
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 5.0e-49 198.0 106 94.3
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 6.6e-49 197.6 110 90.9
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.9e-48 196.1 110 91.8
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 2.5e-48 195.7 110 90.0
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.5e-48 195.7 110 90.0
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 3.3e-48 195.3 110 90.0
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 4.3e-48 194.9 110 90.9
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 4.3e-48 194.9 110 88.2
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 4.3e-48 194.9 110 90.9
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 5.6e-48 194.5 110 89.1
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 5.6e-48 194.5 110 88.2
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 7.3e-48 194.1 110 87.3
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 7.3e-48 194.1 110 90.9
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 7.3e-48 194.1 110 90.0
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 9.5e-48 193.7 122 82.0
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 9.5e-48 193.7 110 90.0
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 9.5e-48 193.7 110 90.9
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 9.5e-48 193.7 110 90.0
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.2e-47 193.4 110 89.1
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.2e-47 193.4 110 89.1
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.2e-47 193.4 110 89.1
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.6e-47 193.0 110 89.1
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 2.1e-47 192.6 110 89.1
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 2.1e-47 192.6 110 90.9
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 2.1e-47 192.6 122 80.3
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 2.1e-47 192.6 122 80.3
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 2.1e-47 192.6 122 80.3
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 2.1e-47 192.6 110 88.2
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.8e-47 192.2 110 90.0
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.8e-47 192.2 110 90.0
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.8e-47 192.2 110 90.9
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 2.8e-47 192.2 110 90.0
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 2.8e-47 192.2 110 90.9
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 2.8e-47 192.2 109 89.9
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 2.8e-47 192.2 110 89.1
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 2.8e-47 192.2 110 89.1
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.8e-47 192.2 110 89.1
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 2.8e-47 192.2 110 87.3
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 3.6e-47 191.8 110 88.2
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 3.6e-47 191.8 110 89.1
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 3.6e-47 191.8 122 81.1
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 3.6e-47 191.8 109 88.1
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 4.7e-47 191.4 110 88.2
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 4.7e-47 191.4 110 90.0
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 4.7e-47 191.4 110 88.2
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 6.2e-47 191.0 110 88.2
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 6.2e-47 191.0 110 90.0
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 8.0e-47 190.7 110 87.3
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 8.0e-47 190.7 110 86.4
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 8.0e-47 190.7 110 87.3
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 8.0e-47 190.7 109 89.9
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.1e-46 190.3 109 89.9
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 1.1e-46 190.3 110 87.3
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 1.4e-46 189.9 109 90.8
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 1.4e-46 189.9 109 89.0
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.4e-46 189.9 110 89.1
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.4e-46 189.9 110 87.3
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 1.8e-46 189.5 109 89.0
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.8e-46 189.5 110 89.1
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 2.3e-46 189.1 109 88.1
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.3e-46 189.1 110 87.3
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 2.3e-46 189.1 110 88.2
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 4.0e-46 188.3 110 88.2
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.2e-46 188.0 110 86.4
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.2e-46 188.0 110 86.4
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 6.8e-46 187.6 110 86.4
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 8.9e-46 187.2 109 88.1
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 8.9e-46 187.2 110 86.4
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.2e-45 186.8 110 87.3
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.2e-45 186.8 110 86.4
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.5e-45 186.4 110 87.3
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.0e-45 186.0 109 87.2
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.0e-45 186.0 110 88.2
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.0e-45 186.0 110 88.2
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.0e-45 186.0 110 88.2
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.0e-45 186.0 110 86.4
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 2.6e-45 185.7 110 85.5
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 2.6e-45 185.7 110 85.5
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 4.4e-45 184.9 109 86.2
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 7.5e-45 184.1 110 85.5
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 9.8e-45 183.7 110 85.5
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.8e-45 183.7 110 85.5
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.8e-45 183.7 110 85.5
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.8e-45 183.7 110 85.5
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 9.8e-45 183.7 110 82.7
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 9.8e-45 183.7 110 87.3
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.3e-44 183.3 110 81.8
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 1.7e-44 183.0 110 86.4
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 2.2e-44 182.6 110 86.4
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 3.7e-44 181.8 110 84.5
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 4.9e-44 181.4 109 86.2
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 6.4e-44 181.0 110 80.9
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 6.4e-44 181.0 109 83.5
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 8.3e-44 180.6 110 85.5
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 8.3e-44 180.6 109 83.5
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 1.1e-43 180.3 110 83.6
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.9e-43 179.5 111 84.7
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 4.1e-43 178.3 110 82.7
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 5.4e-43 177.9 102 88.2
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 7.0e-43 177.6 101 89.1
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 7.8e-42 174.1 146 67.8
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 7.8e-42 174.1 110 75.5
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.3e-41 173.3 120 77.5
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 2.3e-41 172.6 109 79.8
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 8.6e-41 170.6 109 77.1
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.3e-38 162.5 89 93.3
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 3.1e-38 162.2 194 51.5
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 5.8e-37 157.9 89 86.5
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 2.2e-36 156.0 102 75.5
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 3.7e-36 155.2 83 92.8
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.4e-35 152.5 88 87.5
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.6e-34 149.8 116 73.3
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 2.3e-33 146.0 82 89.0
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 6.2e-31 137.9 81 85.2
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 8.1e-31 137.5 105 70.5
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 8.1e-31 137.5 105 70.5
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 8.1e-31 137.5 82 85.4
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.8e-30 136.3 96 76.0
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.8e-30 136.3 72 90.3
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 3.1e-30 135.6 73 93.2
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 8.9e-30 134.0 82 81.7
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.6e-29 132.5 85 76.5
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 2.6e-29 132.5 67 97.0
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 4.9e-28 128.3 76 85.5
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.2e-26 123.6 106 53.8
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 1.5e-24 116.7 81 69.1
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 7.3e-24 114.4 76 78.9
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 2.4e-22 109.4 67 86.6
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 9.0e-22 107.5 67 83.6
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 5.8e-21 104.8 68 76.5
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 1.4e-19 100.1 64 81.2
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.9e-19 99.8 107 58.9
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.4e-19 99.4 67 76.1
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 2.1e-15 86.3 61 73.8
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.6e-10 70.1 45 75.6
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 2.3e-09 66.2 44 75.0
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 2.3e-09 66.2 39 82.1
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 2.3e-09 66.2 39 82.1
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 2.3e-09 66.2 38 81.6


User provided reference genes

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