Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G207600 Glycine max HOM05D007538 ORTHO05D009464 6.9e-173 610.5 307 100.0
Glyma.01G014500 Glycine max HOM05D007538 ORTHO05D009464 3.3e-130 468.8 281 86.5
Phvul.002G136900 Phaseolus vulgaris HOM05D007538 ORTHO05D009464 2.5e-122 442.6 312 76.0
VMungo1215G0128 Vigna mungo HOM05D007538 ORTHO05D009464 8.3e-118 427.6 312 74.4
Lalb_Chr05g0215781 Lupinus albus HOM05D007538 ORTHO05D009464 2.4e-109 399.4 319 69.9
Lj2g0003780 Lotus japonicus HOM05D007538 ORTHO05D009464 2.0e-103 379.8 312 64.4
Lalb_Chr16g0381091 Lupinus albus HOM05D007538 ORTHO05D009464 7.1e-101 371.3 316 65.2
arahy.Tifrunner.gnm1.ann1.IVG2V7 Arachis hypogaea HOM05D007538 ORTHO05D009464 9.3e-101 370.9 323 62.8
arahy.Tifrunner.gnm1.ann1.UGGX0P Arachis hypogaea HOM05D007538 ORTHO05D009464 9.3e-101 370.9 323 62.8
TPR.G19431 Trifolium pratense HOM05D007538 ORTHO05D009464 9.6e-98 360.9 307 64.2
Medtr5g029310 Medicago truncatula HOM05D007538 ORTHO05D009464 6.0e-92 341.7 306 60.8
Ca_25180_v3 Cicer arietinum L. HOM05D007538 ORTHO05D009464 9.3e-85 317.8 314 57.0
Psat0s3175g0080 Pisum sativum HOM05D007538 ORTHO05D009464 1.4e-72 277.3 293 55.6
Cfa012515 Carpinus fangiana HOM05D007538 ORTHO05D009464 5.0e-70 268.9 323 51.4
QL12p001632 Quercus lobata HOM05D007538 ORTHO05D009464 7.4e-66 255.0 322 48.1
CiPaw.12G068100 Carya illinoinensis HOM05D007538 ORTHO05D009464 1.8e-64 250.4 320 50.0
Dinv25258 Davidia involucrata HOM05D007538 ORTHO05D009464 4.2e-61 239.2 319 46.1
Haze_08148 Corylus avellana HOM05D007538 ORTHO05D009464 6.7e-59 231.9 315 47.3
MD06G1026300 Malus domestica HOM05D007538 ORTHO05D009464 2.2e-57 226.9 322 43.5
Hma1.2p1_1569F.1_g291220 Hydrangea macrophylla HOM05D007538 ORTHO05D009464 2.6e-55 219.9 313 44.7
FAN08G1825 Fragaria x ananassa HOM05D007538 ORTHO05D009464 5.9e-55 218.8 325 43.7
RcHm_v2.0_Chr7g0211801 Rosa chinensis HOM05D007538 ORTHO05D009464 3.8e-54 216.1 321 43.0
FAN13G1023 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.1e-53 214.5 327 42.8
FvH4_5g23080 Fragaria vesca HOM05D007538 ORTHO05D009464 4.2e-53 212.6 310 41.9
CANSAT21G1184 Cannabis sativa HOM05D007538 ORTHO05D009464 7.2e-53 211.8 320 41.2
Thecc.03G310000 Theobroma cacao HOM05D007538 ORTHO05D009464 9.4e-53 211.5 316 42.1
Prupe.5G028100 Prunus persica HOM05D007538 ORTHO05D009464 2.1e-52 210.3 242 47.9
Potri.001G137000 Populus trichocarpa HOM05D007538 ORTHO05D009464 5.7e-50 202.2 324 41.4
FAN18G3589 Fragaria x ananassa HOM05D007538 ORTHO05D009464 3.7e-49 199.5 298 41.3
Ciclev10001787m.g Citrus clementina HOM05D007538 ORTHO05D009464 8.2e-49 198.4 336 39.0
CSS0028782 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 4.1e-48 196.1 316 41.8
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 2.6e-47 193.4 242 50.0
CSS0038946 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 4.5e-47 192.6 316 41.1
Gorai.008G224100 Gossypium raimondii HOM05D007538 ORTHO05D009464 5.9e-47 192.2 319 40.8
TWI60G0985 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 5.9e-47 192.2 314 39.2
Duzib205G0978 Durio zibethinus HOM05D007538 ORTHO05D009464 1.7e-46 190.7 324 39.8
GSVIVG01013092001 Vitis vinifera HOM05D007538 ORTHO05D009464 1.7e-46 190.7 323 40.6
FAN04G2865 Fragaria x ananassa HOM05D007538 ORTHO05D009464 3.8e-46 189.5 313 41.5
Gohir.D12G208500 Gossypium hirsutum HOM05D007538 ORTHO05D009464 6.5e-46 188.7 319 40.1
Sabra01G0106100 Salix brachista HOM05D007538 ORTHO05D009464 4.2e-45 186.0 316 41.8
Gohir.A12G206200 Gossypium hirsutum HOM05D007538 ORTHO05D009464 2.7e-44 183.3 317 38.8
TAR629G0149 Trochodendron aralioides HOM05D007538 ORTHO05D009464 2.7e-44 183.3 349 38.1
PGR042G1771 Punica granatum HOM05D007538 ORTHO05D009464 2.3e-43 180.3 316 39.2
CANSAT21G1947 Cannabis sativa HOM05D007538 ORTHO05D009464 1.5e-42 177.6 281 39.9
AUR62007351 Chenopodium quinoa HOM05D007538 ORTHO05D009464 2.6e-42 176.8 324 37.3
AUR62018643 Chenopodium quinoa HOM05D007538 ORTHO05D009464 1.7e-41 174.1 326 38.3
Aqoxy3G02177 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 2.2e-41 173.7 313 38.3
Eucgr.E00229 Eucalyptus grandis HOM05D007538 ORTHO05D009464 4.8e-41 172.6 323 38.1
Cc08_g03440 Coffea canephora HOM05D007538 ORTHO05D009464 5.3e-40 169.1 305 40.0
COL.COLO4_16943 Corchorus olitorius HOM05D007538 ORTHO05D009464 7.0e-40 168.7 314 38.5
Atru.chr6.1522 Acer truncatum HOM05D007538 ORTHO05D009464 1.6e-39 167.5 272 40.1
Hund14370 Selenicereus undatus HOM05D007538 ORTHO05D009464 7.7e-39 165.2 328 38.7
Rhsim11G0021400 Rhododendron simsii HOM05D007538 ORTHO05D009464 3.8e-38 162.9 320 38.4
TWI15G0751 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 3.8e-38 162.9 287 38.0
vmacro00280 Vaccinium macrocarpon HOM05D007538 ORTHO05D009464 2.5e-37 160.2 303 39.6
Oeu027088.1 Olea europaea HOM05D007538 ORTHO05D009464 2.1e-36 157.1 353 37.1
Nitab4.5_0000809g0070 Nicotiana tabacum HOM05D007538 ORTHO05D009464 3.6e-36 156.4 300 39.3
Actinidia01319 Actinidia chinensis HOM05D007538 ORTHO05D009464 3.0e-35 153.3 272 40.4
Manes.17G017000 Manihot esculenta HOM05D007538 ORTHO05D009464 1.3e-33 147.9 342 34.5
PGSC0003DMG400014793 Solanum tuberosum HOM05D007538 ORTHO05D009464 2.2e-33 147.1 307 37.5
Nitab4.5_0000529g0180 Nicotiana tabacum HOM05D007538 ORTHO05D009464 6.3e-33 145.6 302 37.4
Solyc08g076430.3 Solanum lycopersicum HOM05D007538 ORTHO05D009464 6.3e-33 145.6 307 36.8
Sopen08g025010 Solanum pennellii HOM05D007538 ORTHO05D009464 8.3e-33 145.2 308 37.0
Peaxi162Scf00170g00623 Petunia axillaris HOM05D007538 ORTHO05D009464 1.4e-32 144.4 303 38.3
EL10Ac5g12015 Beta vulgaris HOM05D007538 ORTHO05D009464 5.4e-32 142.5 304 35.9
FAN18G1171 Fragaria x ananassa HOM05D007538 ORTHO05D009464 3.5e-31 139.8 297 34.7
DCAR_008224 Daucus carota HOM05D007538 ORTHO05D009464 1.7e-30 137.5 351 33.0
Migut.E00746 Erythranthe guttata HOM05D007538 ORTHO05D009464 3.8e-30 136.3 332 34.0
Psat0s1646g0240 Pisum sativum HOM05D007538 ORTHO05D009464 6.5e-30 135.6 166 52.4
Nn1g00207 Nelumbo nucifera HOM05D007538 ORTHO05D009464 1.1e-29 134.8 325 32.9
Os02g0697200 Oryza sativa ssp. japonica HOM05D007538 ORTHO05D009464 4.2e-29 132.9 362 33.4
SalBow6G3044 Salvia bowleyana HOM05D007538 ORTHO05D009464 8.0e-28 128.6 345 32.8
MSTRG.13737 Avicennia marina HOM05D007538 ORTHO05D009464 1.0e-27 128.3 351 34.8
PSO063G5413 Papaver somniferum HOM05D007538 ORTHO05D009464 3.0e-27 126.7 330 33.3
Ah.12g055490 Amaranthus hybridus HOM05D007538 ORTHO05D009464 6.8e-27 125.6 238 39.5
HanXRQChr03g0083271 Helianthus annuus HOM05D007538 ORTHO05D009464 2.0e-26 124.0 305 33.8
Zm00001eb187890 Zea mays HOM05D007538 ORTHO05D009464 9.8e-26 121.7 340 31.2
Sc01g0007170 Simmondsia chinensis HOM05D007538 ORTHO05D009464 1.3e-25 121.3 243 36.2
ClCG10G001280 Citrullus lanatus HOM05D007538 ORTHO05D009464 1.7e-25 120.9 315 32.7
ECA240G2786 Erigeron canadensis HOM05D007538 ORTHO05D009464 1.0e-22 111.7 315 34.9
Sed0002033 Sechium edule HOM05D007538 ORTHO05D009464 1.0e-22 111.7 317 31.2
CsaV3_3G001350 Cucumis sativus L. HOM05D007538 ORTHO05D009464 2.9e-22 110.2 313 32.6
MELO3C013823.2 Cucumis melo HOM05D007538 ORTHO05D009464 6.6e-22 109.0 311 30.9
Cpa.g.sc208.8 Carica papaya HOM05D007538 ORTHO05D009464 8.0e-20 102.1 240 36.2
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 7.5e-18 95.5 266 33.5
Lsat_1_v5_gn_6_80020 Lactuca sativa HOM05D007538 ORTHO05D009464 2.2e-17 94.0 293 32.8
unitig_22.g5510 Utricularia gibba HOM05D007538 ORTHO05D009464 5.4e-16 89.4 330 28.5
HPP92_020896 Vanilla planifolia HOM05D007538 ORTHO05D009464 7.0e-16 89.0 321 26.8
SEGI_18774 Sequoiadendron giganteum HOM05D007538 ORTHO05D009464 1.6e-15 87.8 323 27.6
CAN.G1987.3 Capsicum annuum HOM05D007538 ORTHO05D009464 3.5e-15 86.7 292 28.8
Zm00001eb251400 Zea mays HOM05D007538 ORTHO05D009464 3.9e-14 83.2 286 30.1
MBI04_g44375_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 2.5e-13 80.5 151 37.1
Medtr5g029290 Medicago truncatula HOM05D007538 ORTHO05D009464 1.6e-12 77.8 95 49.5
MBI04_g32200_MAGBIO Magnolia biondii HOM05D007538 ORTHO05D009464 5.8e-10 69.3 81 46.9
Aqoxy1G00983 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 8.3e-09 65.5 192 31.2


User provided reference genes

Program Settings